Strain Fitness in Escherichia fergusonii Becca around EFB2_03399

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,549,150	+		EFB2_03398	0.53	+0.3
3,549,156	+		EFB2_03398	0.53	+2.3
3,549,156	+		EFB2_03398	0.53	-0.6
3,549,156	+		EFB2_03398	0.53	-0.3
3,549,156	+		EFB2_03398	0.53	+0.4
3,549,157	-		EFB2_03398	0.53	-4.0
3,549,157	-		EFB2_03398	0.53	-2.3
3,549,181	+		EFB2_03398	0.55	+0.6
3,549,181	+		EFB2_03398	0.55	-0.9
3,549,181	+		EFB2_03398	0.55	+0.4
3,549,223	+		EFB2_03398	0.57	-1.1
3,549,223	+		EFB2_03398	0.57	+2.1
3,549,224	-		EFB2_03398	0.57	-2.3
3,549,224	-		EFB2_03398	0.57	+2.3
3,549,224	-		EFB2_03398	0.57	+0.2
3,549,232	+		EFB2_03398	0.58	-3.0
3,549,232	+		EFB2_03398	0.58	-2.0
3,549,233	-		EFB2_03398	0.58	-0.6
3,549,233	-		EFB2_03398	0.58	-0.2
3,549,263	-		EFB2_03398	0.59	-0.9
3,549,381	+		EFB2_03398	0.67	+0.4
3,549,443	-		EFB2_03398	0.70	-0.3
3,549,443	-		EFB2_03398	0.70	-0.0
3,549,443	-		EFB2_03398	0.70	-2.0
3,549,443	-		EFB2_03398	0.70	-0.0
3,549,466	+		EFB2_03398	0.72	+0.7
3,549,466	+		EFB2_03398	0.72	+0.6
3,549,466	+		EFB2_03398	0.72	-1.0
3,549,467	-		EFB2_03398	0.72	+0.4
3,549,467	-		EFB2_03398	0.72	-1.2
3,549,476	+		EFB2_03398	0.72	-0.5
3,549,476	+		EFB2_03398	0.72	+1.1
3,549,476	+		EFB2_03398	0.72	+1.7
3,549,477	-		EFB2_03398	0.72	+2.1
3,549,477	-		EFB2_03398	0.72	-2.7
3,549,477	-		EFB2_03398	0.72	-3.3
3,549,477	-		EFB2_03398	0.72	-2.8
3,549,477	-		EFB2_03398	0.72	-0.9
3,549,477	-		EFB2_03398	0.72	-0.4
3,549,498	+		EFB2_03398	0.74	+1.2
3,549,498	+		EFB2_03398	0.74	+1.1
3,549,498	+		EFB2_03398	0.74	-1.8
3,549,498	+		EFB2_03398	0.74	+0.1
3,549,498	+		EFB2_03398	0.74	-4.5
3,549,498	+		EFB2_03398	0.74	-0.5
3,549,498	+		EFB2_03398	0.74	-3.0
3,549,498	+		EFB2_03398	0.74	+1.5
3,549,498	+		EFB2_03398	0.74	+3.8
3,549,498	+		EFB2_03398	0.74	+0.3
3,549,498	+		EFB2_03398	0.74	+0.5
3,549,499	-		EFB2_03398	0.74	+1.1
3,549,499	-		EFB2_03398	0.74	-0.8
3,549,499	-		EFB2_03398	0.74	+0.5
3,549,499	-		EFB2_03398	0.74	-1.5
3,549,592	+		EFB2_03398	0.79	+0.3
3,549,592	+		EFB2_03398	0.79	+0.6
3,549,592	+		EFB2_03398	0.79	-3.2
3,549,593	-		EFB2_03398	0.79	-1.5
3,549,593	-		EFB2_03398	0.79	-2.3
3,549,593	-		EFB2_03398	0.79	+0.9
3,549,638	+		EFB2_03398	0.82	+0.5
3,549,638	+		EFB2_03398	0.82	-0.7
3,549,638	+		EFB2_03398	0.82	+0.3
3,549,639	-		EFB2_03398	0.82	-2.8
3,549,639	-		EFB2_03398	0.82	+0.2
3,549,639	-		EFB2_03398	0.82	-3.7
3,549,639	-		EFB2_03398	0.82	+0.4
3,549,639	-		EFB2_03398	0.82	-1.8
3,549,687	+		EFB2_03398	0.85	+1.4
3,549,688	-		EFB2_03398	0.85	-0.4
3,549,688	-		EFB2_03398	0.85	+0.4
3,549,718	-		EFB2_03398	0.87	+1.5
3,549,793	+				+1.0
3,549,793	+				-0.4
3,549,793	+				+2.4
3,549,858	+				-1.8
3,549,859	-				-2.5
3,549,895	+				-0.0
3,549,929	+				+1.0
3,549,929	+				+0.2
3,549,929	+				+0.6
3,549,929	+				-0.7
3,549,929	+				-1.2
3,549,930	-				+1.4
3,549,930	-				+0.5
3,549,930	-				-2.6
3,549,944	+				-1.5
3,549,944	+				+0.2
3,549,945	-				+0.7
3,549,962	+				+1.1
3,549,962	+				+1.4
3,549,962	+				+1.0
3,549,962	+				+0.9
3,549,963	-				-1.6
3,549,963	-				-1.2
3,549,963	-				-1.2
3,549,963	-				-0.3
3,549,963	-				+2.0
3,549,963	-				+1.6
3,549,963	-				-0.7
3,549,963	-				-0.7
3,549,971	+				+1.9
3,549,971	+				-0.9
3,549,971	+				-1.5
3,550,073	+				-1.1
3,550,073	+				-1.7
3,550,074	-				+1.1
3,550,074	-				-0.7
3,550,074	-				-2.8
3,550,106	+				-3.3
3,550,106	+				+0.4
3,550,106	+				+1.0
3,550,106	+				+0.3
3,550,106	+				-0.1
3,550,106	+				-2.7
3,550,107	-				+1.5
3,550,107	-				-0.3
3,550,107	-				-1.3
3,550,107	-				-1.0
3,550,109	+				-2.3
3,550,109	+				+1.7
3,550,109	+				+0.3
3,550,109	+				-3.3
3,550,109	+				+0.6
3,550,109	+				-2.0
3,550,109	+				+0.8
3,550,109	+				-0.1
3,550,109	+				+1.7
3,550,109	+				-3.1
3,550,109	+				-0.2
3,550,109	+				-0.6
3,550,109	+				+0.9
3,550,109	+				+0.6
3,550,110	-				-0.5
3,550,110	-				-1.6
3,550,110	-				+0.7
3,550,110	-				-1.5
3,550,110	-				+0.9
3,550,110	-				+0.1
3,550,110	-				-1.8
3,550,110	-				+2.2
3,550,110	-				-2.9
3,550,110	-				-0.0
3,550,166	+				+0.6
3,550,167	-				-0.5
3,550,189	+		EFB2_03399	0.11	-0.4
3,550,189	+		EFB2_03399	0.11	-1.9
3,550,189	+		EFB2_03399	0.11	-1.1
3,550,190	-		EFB2_03399	0.11	+0.3
3,550,190	-		EFB2_03399	0.11	-2.8
3,550,190	-		EFB2_03399	0.11	-0.4
3,550,199	+		EFB2_03399	0.12	-3.8
3,550,199	+		EFB2_03399	0.12	+0.2
3,550,199	+		EFB2_03399	0.12	-2.8
3,550,232	+		EFB2_03399	0.13	+0.1
3,550,232	+		EFB2_03399	0.13	-2.3
3,550,302	+		EFB2_03399	0.17	-0.3
3,550,303	-		EFB2_03399	0.17	-0.4
3,550,343	+		EFB2_03399	0.19	-2.9
3,550,343	+		EFB2_03399	0.19	-2.8
3,550,344	-		EFB2_03399	0.19	+0.1
3,550,344	-		EFB2_03399	0.19	+0.5
3,550,344	-		EFB2_03399	0.19	+0.6
3,550,363	+		EFB2_03399	0.20	-0.3
3,550,363	+		EFB2_03399	0.20	-2.9
3,550,377	-		EFB2_03399	0.20	+0.5
3,550,377	-		EFB2_03399	0.20	-0.9
3,550,380	-		EFB2_03399	0.20	-1.6
3,550,380	-		EFB2_03399	0.20	-0.4
3,550,505	+		EFB2_03399	0.26	-2.9
3,550,505	+		EFB2_03399	0.26	+1.2
3,550,506	-		EFB2_03399	0.27	-1.8
3,550,601	+		EFB2_03399	0.31	-0.7
3,550,601	+		EFB2_03399	0.31	+1.4
3,550,601	+		EFB2_03399	0.31	-0.6
3,550,601	+		EFB2_03399	0.31	-0.6
3,550,602	-		EFB2_03399	0.31	-0.0
3,550,602	-		EFB2_03399	0.31	-1.0
3,550,650	-		EFB2_03399	0.34	-2.9
3,550,650	-		EFB2_03399	0.34	+1.0
3,550,741	+		EFB2_03399	0.38	+3.5
3,550,741	+		EFB2_03399	0.38	-0.2
3,550,741	+		EFB2_03399	0.38	+0.7
3,550,741	+		EFB2_03399	0.38	-0.7
3,550,741	+		EFB2_03399	0.38	+0.3
3,550,741	+		EFB2_03399	0.38	-1.4
3,550,741	+		EFB2_03399	0.38	+0.9
3,550,741	+		EFB2_03399	0.38	+1.1
3,550,741	+		EFB2_03399	0.38	+0.9
3,550,741	+		EFB2_03399	0.38	+1.7
3,550,741	+		EFB2_03399	0.38	-1.3
3,550,741	+		EFB2_03399	0.38	-0.7
3,550,741	+		EFB2_03399	0.38	-1.5
3,550,741	+		EFB2_03399	0.38	-1.4
3,550,742	-		EFB2_03399	0.38	+1.3
3,550,742	-		EFB2_03399	0.38	+0.6
3,550,742	-		EFB2_03399	0.38	+2.4
3,550,742	-		EFB2_03399	0.38	-1.0
3,550,742	-		EFB2_03399	0.38	+0.1
3,550,742	-		EFB2_03399	0.38	-1.3
3,550,742	-		EFB2_03399	0.38	-0.4
3,550,742	-		EFB2_03399	0.38	+0.8
3,550,742	-		EFB2_03399	0.38	+0.0
3,550,742	-		EFB2_03399	0.38	+0.4
3,550,742	-		EFB2_03399	0.38	+1.6
3,550,742	-		EFB2_03399	0.38	+1.5
3,550,760	+		EFB2_03399	0.39	-2.0
3,550,823	+		EFB2_03399	0.42	-0.6
3,550,824	-		EFB2_03399	0.42	+0.4
3,550,883	+		EFB2_03399	0.45	+1.2
3,550,884	-		EFB2_03399	0.45	+1.6
3,550,884	-		EFB2_03399	0.45	+0.4
3,550,884	-		EFB2_03399	0.45	+0.6
3,551,015	+		EFB2_03399	0.51	-0.0
3,551,015	+		EFB2_03399	0.51	-2.2
3,551,015	+		EFB2_03399	0.51	-2.9
3,551,016	-		EFB2_03399	0.51	-3.0
3,551,016	-		EFB2_03399	0.51	+0.2
3,551,016	-		EFB2_03399	0.51	-0.3
3,551,016	-		EFB2_03399	0.51	+0.8
3,551,043	-		EFB2_03399	0.53	-2.3
3,551,086	+		EFB2_03399	0.55	-2.2
3,551,087	-		EFB2_03399	0.55	+1.9
3,551,288	+		EFB2_03399	0.65	-0.5
3,551,304	-		EFB2_03399	0.65	-1.9
3,551,304	-		EFB2_03399	0.65	-1.5
3,551,304	-		EFB2_03399	0.65	+1.0
3,551,304	-		EFB2_03399	0.65	-0.4
3,551,304	-		EFB2_03399	0.65	-1.5
3,551,322	-		EFB2_03399	0.66	-1.9
3,551,322	-		EFB2_03399	0.66	+0.4
3,551,357	+		EFB2_03399	0.68	-2.8
3,551,357	+		EFB2_03399	0.68	+1.2
3,551,358	-		EFB2_03399	0.68	+1.0
3,551,358	-		EFB2_03399	0.68	-0.2
3,551,358	-		EFB2_03399	0.68	+0.4
3,551,405	-		EFB2_03399	0.70	+0.9
3,551,479	-		EFB2_03399	0.74	-0.7
3,551,603	+		EFB2_03399	0.80	+1.1
3,551,603	+		EFB2_03399	0.80	+1.1
3,551,603	+		EFB2_03399	0.80	+0.7
3,551,603	+		EFB2_03399	0.80	+0.8
3,551,603	+		EFB2_03399	0.80	-1.5
3,551,604	-		EFB2_03399	0.80	-0.8
3,551,604	-		EFB2_03399	0.80	-0.2
3,551,644	+		EFB2_03399	0.82	-0.3
3,551,644	+		EFB2_03399	0.82	-1.4
3,551,644	+		EFB2_03399	0.82	+0.9
3,551,644	+		EFB2_03399	0.82	-0.9
3,551,645	-		EFB2_03399	0.82	-0.0
3,551,645	-		EFB2_03399	0.82	+2.2
3,551,645	-		EFB2_03399	0.82	+0.2
3,551,645	-		EFB2_03399	0.82	-2.5
3,551,645	-		EFB2_03399	0.82	-0.3
3,551,721	+		EFB2_03399	0.86	-1.3
3,551,722	-		EFB2_03399	0.86	-1.7
3,551,722	-		EFB2_03399	0.86	-3.1
3,551,722	-		EFB2_03399	0.86	+0.4
3,551,722	-		EFB2_03399	0.86	-0.4
3,551,722	-		EFB2_03399	0.86	-0.8
3,551,722	-		EFB2_03399	0.86	-2.6
3,551,722	-		EFB2_03399	0.86	-2.1
3,551,757	+		EFB2_03399	0.88	-1.6
3,551,758	-		EFB2_03399	0.88	-0.2
3,551,767	+		EFB2_03399	0.88	-0.5
3,551,767	+		EFB2_03399	0.88	-1.2
3,551,767	+		EFB2_03399	0.88	-0.9
3,551,768	-		EFB2_03399	0.88	+2.4
3,551,768	-		EFB2_03399	0.88	-2.2
3,551,883	+				-2.5
3,551,883	+				-1.2
3,551,883	+				-0.6
3,551,884	-				+0.6
3,551,885	+				-0.4
3,551,885	+				-0.2
3,551,886	-				+1.0
3,551,886	-				-3.3
3,551,923	+				+0.2
3,551,924	-				-3.3
3,551,931	+				+0.3
3,551,932	-				+1.4
3,551,932	-				+0.8
3,551,966	+				-3.5
3,551,983	+				-2.7
3,551,984	-				+0.5
3,551,984	-				+1.0
3,551,984	-				-0.5
3,552,016	+				+0.2
3,552,016	+				+1.1
3,552,016	+				-2.0
3,552,016	+				-3.7
3,552,017	-				-1.6
3,552,017	-				+2.2
3,552,017	-				+0.8
3,552,017	-				+0.9
3,552,030	+				-1.7
3,552,030	+				-1.4
3,552,030	+				+2.0
3,552,031	-				-0.0
3,552,031	-				+0.7
3,552,071	-				+0.6
3,552,071	-				+0.6
3,552,160	+		EFB2_03400	0.24	-2.6
3,552,161	-		EFB2_03400	0.25	+0.2
3,552,161	-		EFB2_03400	0.25	+1.4
3,552,210	-		EFB2_03400	0.33	-1.3
3,552,248	+		EFB2_03400	0.40	+0.2
3,552,248	+		EFB2_03400	0.40	-1.3
3,552,249	-		EFB2_03400	0.40	+0.2
3,552,249	-		EFB2_03400	0.40	+0.7
3,552,249	-		EFB2_03400	0.40	+2.0
3,552,249	-		EFB2_03400	0.40	-1.4
3,552,249	-		EFB2_03400	0.40	+1.5
3,552,249	-		EFB2_03400	0.40	-1.4
3,552,250	+		EFB2_03400	0.40	-0.8
3,552,250	+		EFB2_03400	0.40	-1.2
3,552,250	+		EFB2_03400	0.40	+0.8
3,552,250	+		EFB2_03400	0.40	+0.3
3,552,250	+		EFB2_03400	0.40	-1.7
3,552,250	+		EFB2_03400	0.40	+0.1
3,552,251	-		EFB2_03400	0.40	-1.5
3,552,251	-		EFB2_03400	0.40	+1.3
3,552,251	-		EFB2_03400	0.40	-0.1
3,552,251	-		EFB2_03400	0.40	-0.6
3,552,251	-		EFB2_03400	0.40	-0.5
3,552,251	-		EFB2_03400	0.40	+1.0
3,552,304	+		EFB2_03400	0.50	-2.2
3,552,305	-		EFB2_03400	0.50	+2.0
3,552,312	+		EFB2_03400	0.51	-1.6
3,552,334	-		EFB2_03400	0.55	-2.6
3,552,343	+		EFB2_03400	0.56	-0.7
3,552,409	+		EFB2_03400	0.68	-0.4
3,552,409	+		EFB2_03400	0.68	+0.7
3,552,409	+		EFB2_03400	0.68	+1.5
3,552,409	+		EFB2_03400	0.68	-1.7
3,552,409	+		EFB2_03400	0.68	-1.2
3,552,409	+		EFB2_03400	0.68	+0.2
3,552,409	+		EFB2_03400	0.68	-1.1
3,552,409	+		EFB2_03400	0.68	+0.0
3,552,409	+		EFB2_03400	0.68	-1.5
3,552,410	-		EFB2_03400	0.68	-2.7
3,552,410	-		EFB2_03400	0.68	+0.2
3,552,463	+		EFB2_03400	0.77	+0.2
3,552,464	-		EFB2_03400	0.77	+0.5
3,552,464	-		EFB2_03400	0.77	-1.3
3,552,503	+		EFB2_03400	0.84	-1.4
3,552,503	+		EFB2_03400	0.84	-1.3
3,552,504	-		EFB2_03400	0.84	+1.1
3,552,527	+		EFB2_03400	0.88	-1.2
3,552,527	+		EFB2_03400	0.88	+0.9
3,552,527	+		EFB2_03400	0.88	-3.6
3,552,527	+		EFB2_03400	0.88	-1.0
3,552,527	+		EFB2_03400	0.88	+0.3
3,552,527	+		EFB2_03400	0.88	+3.4
3,552,528	-		EFB2_03400	0.89	-3.5
3,552,528	-		EFB2_03400	0.89	-0.5
3,552,528	-		EFB2_03400	0.89	-0.4
3,552,528	-		EFB2_03400	0.89	+3.6
3,552,528	-		EFB2_03400	0.89	-1.3
3,552,530	-		EFB2_03400	0.89	+0.8
3,552,577	+				-0.0
3,552,590	+				-0.7
3,552,601	+				-2.9
3,552,601	+				-1.1
3,552,602	-				+1.6
3,552,602	-				+1.7
3,552,602	-				+1.7
3,552,602	-				-3.5
3,552,602	-				+3.6
3,552,602	-				+2.4
3,552,746	+				+2.2
3,552,746	+				-2.8
3,552,747	-				-0.6
3,552,763	+				+1.6
3,552,764	-				-3.3
3,552,764	-				-0.5
3,552,823	+				-0.2
3,552,837	+				-2.9
3,552,838	-				-1.2
3,552,904	+		EFB2_03401	0.12	+0.0
3,552,904	+		EFB2_03401	0.12	+0.5
3,552,905	-		EFB2_03401	0.12	+2.1
3,552,905	-		EFB2_03401	0.12	+1.4
3,552,905	-		EFB2_03401	0.12	-0.6
3,552,905	-		EFB2_03401	0.12	-0.7
3,552,926	+		EFB2_03401	0.13	+2.1
3,552,926	+		EFB2_03401	0.13	-3.2
3,552,926	+		EFB2_03401	0.13	+0.4
3,552,926	+		EFB2_03401	0.13	-2.8
3,552,926	+		EFB2_03401	0.13	+0.2
3,552,927	-		EFB2_03401	0.13	+1.3
3,552,927	-		EFB2_03401	0.13	-1.5
3,552,927	-		EFB2_03401	0.13	-0.4
3,552,927	-		EFB2_03401	0.13	+0.1
3,552,927	-		EFB2_03401	0.13	-1.4
3,552,950	+		EFB2_03401	0.14	-3.6
3,552,951	-		EFB2_03401	0.14	-0.8
3,552,951	-		EFB2_03401	0.14	-0.1
3,552,951	-		EFB2_03401	0.14	+0.6
3,553,004	+		EFB2_03401	0.16	+1.4