Strain Fitness in Escherichia fergusonii Becca around EFB2_02901

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,038,683	+		EFB2_02899	0.18	+1.1
3,038,683	+		EFB2_02899	0.18	-1.4
3,038,683	+		EFB2_02899	0.18	-1.6
3,038,683	+		EFB2_02899	0.18	-1.3
3,038,683	+		EFB2_02899	0.18	-2.7
3,038,684	-		EFB2_02899	0.19	-2.0
3,038,684	-		EFB2_02899	0.19	+1.4
3,038,684	-		EFB2_02899	0.19	+0.3
3,038,708	+		EFB2_02899	0.22	+0.5
3,038,709	-		EFB2_02899	0.22	+3.0
3,038,709	-		EFB2_02899	0.22	+1.9
3,038,709	-		EFB2_02899	0.22	-1.4
3,038,709	-		EFB2_02899	0.22	-2.0
3,038,715	+		EFB2_02899	0.23	+1.9
3,038,715	+		EFB2_02899	0.23	+0.3
3,038,715	+		EFB2_02899	0.23	+0.7
3,038,715	+		EFB2_02899	0.23	+0.4
3,038,715	+		EFB2_02899	0.23	+0.0
3,038,715	+		EFB2_02899	0.23	-0.2
3,038,715	+		EFB2_02899	0.23	+1.1
3,038,715	+		EFB2_02899	0.23	-1.7
3,038,715	+		EFB2_02899	0.23	-2.4
3,038,715	+		EFB2_02899	0.23	+1.3
3,038,715	+		EFB2_02899	0.23	-1.9
3,038,715	+		EFB2_02899	0.23	+1.4
3,038,715	+		EFB2_02899	0.23	-1.7
3,038,715	+		EFB2_02899	0.23	-1.3
3,038,715	+		EFB2_02899	0.23	-2.0
3,038,715	+		EFB2_02899	0.23	+1.9
3,038,716	-		EFB2_02899	0.23	+3.9
3,038,716	-		EFB2_02899	0.23	+1.8
3,038,716	-		EFB2_02899	0.23	-1.3
3,038,716	-		EFB2_02899	0.23	-3.7
3,038,716	-		EFB2_02899	0.23	+0.4
3,038,716	-		EFB2_02899	0.23	-1.5
3,038,716	-		EFB2_02899	0.23	-0.4
3,038,716	-		EFB2_02899	0.23	-0.2
3,038,716	-		EFB2_02899	0.23	-2.8
3,038,716	-		EFB2_02899	0.23	-1.0
3,038,716	-		EFB2_02899	0.23	-0.6
3,038,716	-		EFB2_02899	0.23	-0.2
3,038,716	-		EFB2_02899	0.23	-1.9
3,038,716	-		EFB2_02899	0.23	-0.3
3,038,716	-		EFB2_02899	0.23	-1.5
3,038,797	+		EFB2_02899	0.35	+1.5
3,038,797	+		EFB2_02899	0.35	+0.2
3,038,798	-		EFB2_02899	0.35	+0.4
3,038,887	+		EFB2_02899	0.48	-0.5
3,038,888	-		EFB2_02899	0.48	+0.0
3,038,996	-		EFB2_02899	0.63	-2.0
3,039,013	+		EFB2_02899	0.66	-1.2
3,039,013	+		EFB2_02899	0.66	-1.9
3,039,014	-		EFB2_02899	0.66	-2.2
3,039,029	-		EFB2_02899	0.68	-2.1
3,039,159	-		EFB2_02899	0.87	-0.1
3,039,159	-		EFB2_02899	0.87	+1.0
3,039,190	+				-2.1
3,039,190	+				+0.6
3,039,190	+				+0.8
3,039,190	+				-2.5
3,039,190	+				+0.1
3,039,190	+				-1.7
3,039,190	+				+1.3
3,039,190	+				-2.4
3,039,190	+				+1.2
3,039,190	+				-3.3
3,039,191	-				-2.3
3,039,191	-				+0.1
3,039,191	-				+0.8
3,039,191	-				+2.3
3,039,191	-				-2.7
3,039,191	-				-0.4
3,039,191	-				-0.0
3,039,191	-				+0.9
3,039,191	-				-2.0
3,039,193	+				-0.0
3,039,193	+				+0.8
3,039,193	+				-0.6
3,039,193	+				+1.0
3,039,193	+				-1.4
3,039,194	-				+0.7
3,039,194	-				+1.6
3,039,194	-				-0.6
3,039,194	-				-1.8
3,039,214	+				-2.0
3,039,214	+				+0.3
3,039,214	+				-1.2
3,039,250	+				+3.4
3,039,250	+				-2.9
3,039,250	+				-1.8
3,039,250	+				+1.7
3,039,250	+				+0.0
3,039,250	+				-0.4
3,039,250	+				+0.1
3,039,251	-				+1.5
3,039,251	-				-2.9
3,039,251	-				-1.7
3,039,251	-				+3.4
3,039,251	-				-0.1
3,039,251	-				+0.8
3,039,251	-				+1.6
3,039,251	-				+1.0
3,039,264	-				+2.4
3,039,276	+				+3.5
3,039,333	-		EFB2_02900	0.18	-0.9
3,039,333	-		EFB2_02900	0.18	+0.8
3,039,333	-		EFB2_02900	0.18	+0.3
3,039,333	-		EFB2_02900	0.18	+1.4
3,039,357	+		EFB2_02900	0.23	+1.6
3,039,399	-		EFB2_02900	0.34	-0.3
3,039,399	-		EFB2_02900	0.34	-3.0
3,039,399	-		EFB2_02900	0.34	-0.2
3,039,399	-		EFB2_02900	0.34	-3.1
3,039,434	+		EFB2_02900	0.42	-2.9
3,039,463	+		EFB2_02900	0.50	-0.7
3,039,463	+		EFB2_02900	0.50	-1.7
3,039,464	-		EFB2_02900	0.50	+0.2
3,039,464	-		EFB2_02900	0.50	+1.4
3,039,464	-		EFB2_02900	0.50	+2.1
3,039,465	+		EFB2_02900	0.50	-1.0
3,039,466	-		EFB2_02900	0.50	-1.7
3,039,481	+		EFB2_02900	0.54	+0.8
3,039,482	-		EFB2_02900	0.54	+1.0
3,039,523	+		EFB2_02900	0.64	-0.7
3,039,523	+		EFB2_02900	0.64	+0.4
3,039,523	+		EFB2_02900	0.64	-0.4
3,039,523	+		EFB2_02900	0.64	-1.5
3,039,523	+		EFB2_02900	0.64	+0.4
3,039,524	-		EFB2_02900	0.65	-3.3
3,039,524	-		EFB2_02900	0.65	+2.2
3,039,524	-		EFB2_02900	0.65	+1.0
3,039,524	-		EFB2_02900	0.65	+0.0
3,039,524	-		EFB2_02900	0.65	+0.7
3,039,626	-				-1.7
3,039,652	-				+1.8
3,039,685	+				-0.2
3,039,686	-				+2.7
3,039,686	-				-1.4
3,039,686	-				-4.2
3,039,726	+		EFB2_02901	0.13	+4.8
3,039,726	+		EFB2_02901	0.13	-0.6
3,039,740	+		EFB2_02901	0.17	-1.5
3,039,740	+		EFB2_02901	0.17	-1.3
3,039,741	-		EFB2_02901	0.17	+0.6
3,039,741	-		EFB2_02901	0.17	+1.1
3,039,783	+		EFB2_02901	0.27	-1.4
3,039,792	+		EFB2_02901	0.29	+0.6
3,039,793	-		EFB2_02901	0.29	-4.2
3,039,793	-		EFB2_02901	0.29	-2.4
3,039,793	-		EFB2_02901	0.29	+0.7
3,039,795	+		EFB2_02901	0.30	+0.2
3,039,822	+		EFB2_02901	0.36	+1.8
3,039,828	-		EFB2_02901	0.38	-1.3
3,039,940	-		EFB2_02901	0.65	-0.6
3,040,060	+				+0.2
3,040,060	+				-1.6
3,040,086	+				-2.5
3,040,086	+				-0.9
3,040,086	+				+0.8
3,040,086	+				-1.4
3,040,086	+				-0.9
3,040,086	+				-0.6
3,040,086	+				+0.2
3,040,086	+				-1.3
3,040,086	+				-0.7
3,040,086	+				-1.6
3,040,086	+				+1.6
3,040,086	+				-3.4
3,040,087	-				-2.1
3,040,087	-				+0.8
3,040,087	-				+2.7
3,040,087	-				+0.1
3,040,087	-				+1.5
3,040,087	-				+1.1
3,040,087	-				-0.0
3,040,087	-				+0.4
3,040,087	-				+0.4
3,040,101	+				+1.8
3,040,102	-				-1.5
3,040,123	+				-0.2
3,040,123	+				+0.2
3,040,123	+				-0.3
3,040,123	+				+0.4
3,040,123	+				+0.1
3,040,123	+				+0.8
3,040,124	-				-1.2
3,040,124	-				-2.2
3,040,124	-				+0.9
3,040,124	-				+0.0
3,040,124	-				-0.1
3,040,124	-				+0.8
3,040,133	+				-2.6
3,040,155	+				-0.2
3,040,156	-				+1.8
3,040,174	+				-2.4
3,040,174	+				-1.5
3,040,174	+				-2.0
3,040,174	+				-0.1
3,040,174	+				+0.4
3,040,174	+				-1.2
3,040,174	+				-1.2
3,040,174	+				-1.1
3,040,174	+				-0.6
3,040,174	+				-0.2
3,040,174	+				-1.9
3,040,174	+				+0.6
3,040,174	+				+1.6
3,040,174	+				-0.2
3,040,175	-				-0.4
3,040,175	-				-1.0
3,040,175	-				+0.3
3,040,175	-				+1.9
3,040,175	-				-3.4
3,040,175	-				+0.9
3,040,175	-				+0.3
3,040,175	-				-0.0
3,040,175	-				-0.7
3,040,175	-				-0.5
3,040,175	-				+1.6
3,040,178	+				+0.2
3,040,178	+				+0.6
3,040,178	+				-3.4
3,040,179	-				+1.7
3,040,179	-				-1.3
3,040,179	-				-1.2
3,040,206	+				-2.2
3,040,206	+				+2.2
3,040,206	+				+0.7
3,040,206	+				+2.0
3,040,206	+				+1.1
3,040,206	+				+0.5
3,040,206	+				+0.7
3,040,207	-				-1.0
3,040,207	-				-1.2
3,040,207	-				+0.8
3,040,207	-				-0.0
3,040,220	+				+3.4
3,040,220	+				-3.6
3,040,220	+				+1.0
3,040,221	-				-2.3
3,040,221	-				+0.5
3,040,221	-				+0.1
3,040,252	+				-2.4
3,040,253	-				+1.1
3,040,259	+				+0.4
3,040,260	-				+1.1
3,040,280	-				+0.6
3,040,294	+				-2.9
3,040,357	+		EFB2_02902	0.17	+0.1
3,040,358	-		EFB2_02902	0.18	+1.0
3,040,379	+		EFB2_02902	0.21	+1.6
3,040,379	+		EFB2_02902	0.21	+0.7
3,040,379	+		EFB2_02902	0.21	-2.5
3,040,380	-		EFB2_02902	0.21	-0.2
3,040,386	-		EFB2_02902	0.22	-0.7
3,040,399	+		EFB2_02902	0.24	-2.3
3,040,399	+		EFB2_02902	0.24	-0.0
3,040,399	+		EFB2_02902	0.24	+2.7
3,040,399	+		EFB2_02902	0.24	-1.2
3,040,399	+		EFB2_02902	0.24	-0.7
3,040,399	+		EFB2_02902	0.24	+0.9
3,040,399	+		EFB2_02902	0.24	-0.7
3,040,400	-		EFB2_02902	0.24	+0.4
3,040,400	-		EFB2_02902	0.24	-1.4
3,040,400	-		EFB2_02902	0.24	+1.8
3,040,439	+		EFB2_02902	0.30	+0.4
3,040,439	+		EFB2_02902	0.30	-2.0
3,040,439	+		EFB2_02902	0.30	+0.1
3,040,439	+		EFB2_02902	0.30	-0.9
3,040,439	+		EFB2_02902	0.30	-0.5
3,040,439	+		EFB2_02902	0.30	+0.1
3,040,439	+		EFB2_02902	0.30	-0.7
3,040,440	-		EFB2_02902	0.30	+0.1
3,040,440	-		EFB2_02902	0.30	-0.6
3,040,497	+		EFB2_02902	0.39	-0.7
3,040,497	+		EFB2_02902	0.39	+0.7
3,040,497	+		EFB2_02902	0.39	+1.1
3,040,498	-		EFB2_02902	0.39	-0.2
3,040,501	+		EFB2_02902	0.39	+0.3
3,040,501	+		EFB2_02902	0.39	+1.4
3,040,502	-		EFB2_02902	0.39	+2.9
3,040,502	-		EFB2_02902	0.39	+0.9
3,040,502	-		EFB2_02902	0.39	+1.3
3,040,502	-		EFB2_02902	0.39	-1.1
3,040,509	-		EFB2_02902	0.40	+0.4
3,040,509	-		EFB2_02902	0.40	+0.7
3,040,530	+		EFB2_02902	0.44	-1.7
3,040,530	+		EFB2_02902	0.44	+1.4
3,040,530	+		EFB2_02902	0.44	+0.8
3,040,530	+		EFB2_02902	0.44	+0.4
3,040,530	+		EFB2_02902	0.44	+0.1
3,040,530	+		EFB2_02902	0.44	-3.5
3,040,530	+		EFB2_02902	0.44	-1.4
3,040,530	+		EFB2_02902	0.44	-0.2
3,040,531	-		EFB2_02902	0.44	+1.5
3,040,531	-		EFB2_02902	0.44	+1.5
3,040,625	+		EFB2_02902	0.58	+0.5
3,040,625	+		EFB2_02902	0.58	+0.5
3,040,626	-		EFB2_02902	0.58	+4.2
3,040,675	+		EFB2_02902	0.66	+0.9
3,040,675	+		EFB2_02902	0.66	+0.1
3,040,675	+		EFB2_02902	0.66	+0.5
3,040,675	+		EFB2_02902	0.66	-2.0
3,040,675	+		EFB2_02902	0.66	+1.6
3,040,675	+		EFB2_02902	0.66	+0.4
3,040,676	-		EFB2_02902	0.66	-1.0
3,040,676	-		EFB2_02902	0.66	-1.8
3,040,676	-		EFB2_02902	0.66	-0.1
3,040,676	-		EFB2_02902	0.66	+3.4
3,040,676	-		EFB2_02902	0.66	-0.3
3,040,676	-		EFB2_02902	0.66	-1.4
3,040,691	+		EFB2_02902	0.68	+0.9
3,040,692	-		EFB2_02902	0.68	+0.6
3,040,692	-		EFB2_02902	0.68	-1.7
3,040,726	+		EFB2_02902	0.73	+1.8
3,040,883	+				+3.8
3,040,884	-				-1.7
3,040,884	-				+0.3
3,040,889	+				-2.3
3,040,889	+				+0.3
3,040,890	-				-1.2
3,040,890	-				+1.1
3,040,890	-				-0.8
3,040,890	-				+0.1
3,040,890	-				-2.7
3,040,890	-				-0.4
3,040,891	+				-0.7
3,040,892	-				-0.7
3,040,892	-				-0.9
3,040,892	-				+0.7
3,040,899	+				+1.6
3,040,899	+				+0.3
3,040,899	+				+0.4
3,040,899	+				+1.4
3,040,900	-				+0.9
3,040,900	-				-1.2
3,040,900	-				+1.1
3,040,931	+				+0.3
3,040,931	+				-1.9
3,040,932	-				-0.2
3,040,935	+				-0.2
3,040,935	+				-0.6
3,040,935	+				-3.1
3,040,935	+				-0.4
3,040,935	+				+0.3
3,040,935	+				+1.6
3,040,935	+				-0.4
3,040,935	+				-0.4
3,040,935	+				+0.8
3,040,935	+				-0.0
3,040,935	+				+0.8
3,040,935	+				-0.4
3,040,935	+				+0.0
3,040,935	+				-1.2
3,040,935	+				+4.2
3,040,935	+				+0.5
3,040,936	-				-1.4
3,040,936	-				-1.5
3,040,936	-				+0.4
3,040,936	-				-1.7
3,040,936	-				-0.7
3,040,949	+				-1.5
3,040,949	+				+1.3
3,040,950	-				-1.7
3,040,971	+				+0.1
3,040,971	+				-1.7
3,040,971	+				-1.3
3,040,971	+				+0.8
3,040,971	+				-1.4
3,040,972	-				-1.4
3,040,972	-				-2.2
3,040,982	+				+1.4
3,040,982	+				-0.1
3,040,982	+				-2.9
3,040,982	+				-2.0
3,040,982	+				-3.0
3,040,982	+				-1.4
3,040,982	+				+1.1
3,040,982	+				+2.4
3,040,982	+				+2.8
3,040,982	+				+0.5
3,040,982	+				-0.2
3,040,982	+				-0.9
3,040,983	-				-0.7
3,041,012	-		EFB2_02903	0.12	+0.7