Strain Fitness in Escherichia fergusonii Becca around EFB2_02133

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
2,272,254	+		EFB2_02132	0.22	+2.7
2,272,254	+		EFB2_02132	0.22	-0.1
2,272,254	+		EFB2_02132	0.22	-3.5
2,272,254	+		EFB2_02132	0.22	+0.8
2,272,254	+		EFB2_02132	0.22	+1.5
2,272,254	+		EFB2_02132	0.22	+0.5
2,272,255	-		EFB2_02132	0.22	-0.6
2,272,255	-		EFB2_02132	0.22	+0.3
2,272,255	-		EFB2_02132	0.22	-2.9
2,272,294	+		EFB2_02132	0.29	+0.5
2,272,317	+		EFB2_02132	0.33	+1.6
2,272,317	+		EFB2_02132	0.33	-3.8
2,272,318	-		EFB2_02132	0.33	-0.6
2,272,323	+		EFB2_02132	0.33	+2.6
2,272,324	-		EFB2_02132	0.34	-0.8
2,272,328	+		EFB2_02132	0.34	-0.4
2,272,328	+		EFB2_02132	0.34	-0.6
2,272,329	-		EFB2_02132	0.34	-0.9
2,272,329	-		EFB2_02132	0.34	+0.6
2,272,329	-		EFB2_02132	0.34	-0.0
2,272,348	+		EFB2_02132	0.38	+1.0
2,272,348	+		EFB2_02132	0.38	-1.8
2,272,349	-		EFB2_02132	0.38	-0.1
2,272,353	+		EFB2_02132	0.38	+0.4
2,272,353	+		EFB2_02132	0.38	+0.1
2,272,353	+		EFB2_02132	0.38	+0.7
2,272,354	-		EFB2_02132	0.39	-3.1
2,272,357	+		EFB2_02132	0.39	+0.6
2,272,357	+		EFB2_02132	0.39	-2.6
2,272,357	+		EFB2_02132	0.39	+1.8
2,272,358	-		EFB2_02132	0.39	-0.8
2,272,358	-		EFB2_02132	0.39	+2.5
2,272,383	+		EFB2_02132	0.43	+2.9
2,272,384	-		EFB2_02132	0.43	-1.5
2,272,384	-		EFB2_02132	0.43	+0.7
2,272,384	-		EFB2_02132	0.43	+1.6
2,272,511	+		EFB2_02132	0.64	-0.5
2,272,511	+		EFB2_02132	0.64	-0.2
2,272,511	+		EFB2_02132	0.64	-0.0
2,272,511	+		EFB2_02132	0.64	+0.4
2,272,512	-		EFB2_02132	0.64	-1.1
2,272,512	-		EFB2_02132	0.64	+2.7
2,272,512	-		EFB2_02132	0.64	-1.5
2,272,512	-		EFB2_02132	0.64	-0.3
2,272,581	-		EFB2_02132	0.76	-0.9
2,272,630	+		EFB2_02132	0.84	+2.3
2,272,631	-		EFB2_02132	0.84	-2.4
2,272,631	-		EFB2_02132	0.84	-0.1
2,272,636	+		EFB2_02132	0.85	-1.8
2,272,636	+		EFB2_02132	0.85	-3.4
2,272,636	+		EFB2_02132	0.85	-2.0
2,272,636	+		EFB2_02132	0.85	-1.4
2,272,636	+		EFB2_02132	0.85	-2.1
2,272,636	+		EFB2_02132	0.85	+0.0
2,272,637	-		EFB2_02132	0.85	-2.9
2,272,637	-		EFB2_02132	0.85	-3.1
2,272,637	-		EFB2_02132	0.85	-1.9
2,272,637	-		EFB2_02132	0.85	+1.6
2,272,637	-		EFB2_02132	0.85	+1.0
2,272,699	+				-0.1
2,272,700	-				-0.4
2,272,700	-				-1.2
2,272,700	-				+3.9
2,272,753	+				-0.1
2,272,753	+				+0.6
2,272,876	+				+1.7
2,272,877	-				-3.2
2,272,877	-				-1.8
2,272,880	+				+0.0
2,272,881	-				-0.0
2,272,881	-				+0.1
2,272,881	-				-3.1
2,272,884	+				-1.1
2,272,907	+				-0.3
2,272,907	+				-2.9
2,272,907	+				-1.0
2,272,907	+				-1.5
2,272,907	+				-0.8
2,272,907	+				-0.2
2,272,908	-				-0.4
2,272,908	-				-1.0
2,272,908	-				-3.0
2,272,908	-				+1.0
2,272,909	+				-2.7
2,272,909	+				+0.3
2,272,909	+				-2.8
2,272,909	+				-0.9
2,272,909	+				-3.4
2,272,909	+				+0.2
2,272,910	-				+1.2
2,272,910	-				-4.2
2,272,910	-				-0.7
2,272,910	-				-1.1
2,272,910	-				-1.2
2,272,910	-				-0.4
2,272,910	-				+1.5
2,272,910	-				-2.6
2,272,933	-				+2.0
2,272,959	+				-0.8
2,272,959	+				-3.9
2,272,960	-				+0.7
2,272,960	-				-2.5
2,272,960	-				-3.5
2,272,960	-				+0.8
2,272,978	+				+0.9
2,272,978	+				+0.6
2,272,978	+				-3.4
2,272,978	+				+0.3
2,272,979	-				-0.3
2,272,994	+				+1.0
2,272,994	+				-3.3
2,272,994	+				+1.4
2,272,994	+				-1.0
2,272,994	+				-3.8
2,273,019	+				+0.9
2,273,019	+				-2.9
2,273,019	+				-2.9
2,273,019	+				-1.5
2,273,019	+				+1.6
2,273,020	-				-0.6
2,273,020	-				-1.8
2,273,020	-				-1.1
2,273,020	-				-3.0
2,273,020	-				-1.3
2,273,023	+				+1.0
2,273,023	+				-1.3
2,273,024	-				-1.8
2,273,024	-				-0.9
2,273,024	-				-3.2
2,273,031	+				-1.2
2,273,039	+				-2.6
2,273,039	+				-3.6
2,273,039	+				-2.6
2,273,039	+				+1.2
2,273,039	+				-1.8
2,273,039	+				-0.2
2,273,039	+				+0.7
2,273,039	+				+0.1
2,273,040	-				-1.7
2,273,040	-				-2.1
2,273,040	-				+2.1
2,273,040	-				-1.1
2,273,040	-				+1.2
2,273,040	-				-0.6
2,273,055	+				-1.6
2,273,071	+				-1.3
2,273,072	-				+1.9
2,273,106	+				-0.0
2,273,106	+				+0.2
2,273,107	-				-0.9
2,273,107	-				-3.2
2,273,107	-				-0.5
2,273,128	+				-2.8
2,273,129	-				-0.9
2,273,179	-				-1.6
2,273,203	-				-3.0
2,273,203	-				-1.8
2,273,236	-				+2.6
2,273,244	+				-0.8
2,273,244	+				-2.7
2,273,245	-				-2.3
2,273,313	+		EFB2_02133	0.26	-1.8
2,273,313	+		EFB2_02133	0.26	+0.3
2,273,313	+		EFB2_02133	0.26	-0.9
2,273,313	+		EFB2_02133	0.26	-0.4
2,273,313	+		EFB2_02133	0.26	-2.0
2,273,313	+		EFB2_02133	0.26	-1.5
2,273,313	+		EFB2_02133	0.26	-0.5
2,273,313	+		EFB2_02133	0.26	-0.8
2,273,313	+		EFB2_02133	0.26	-0.0
2,273,314	-		EFB2_02133	0.26	+1.6
2,273,314	-		EFB2_02133	0.26	-0.3
2,273,314	-		EFB2_02133	0.26	-2.6
2,273,314	-		EFB2_02133	0.26	-0.4
2,273,347	+		EFB2_02133	0.36	+0.9
2,273,347	+		EFB2_02133	0.36	-0.7
2,273,437	+		EFB2_02133	0.62	-4.7
2,273,437	+		EFB2_02133	0.62	+1.9
2,273,437	+		EFB2_02133	0.62	-0.9
2,273,437	+		EFB2_02133	0.62	-3.7
2,273,437	+		EFB2_02133	0.62	-1.9
2,273,437	+		EFB2_02133	0.62	-0.3
2,273,438	-		EFB2_02133	0.63	-1.9
2,273,451	+		EFB2_02133	0.67	+0.2
2,273,452	-		EFB2_02133	0.67	+0.0
2,273,505	+		EFB2_02133	0.83	-1.2
2,273,505	+		EFB2_02133	0.83	-3.3
2,273,505	+		EFB2_02133	0.83	+1.0
2,273,506	-		EFB2_02133	0.83	-0.0
2,273,553	+				-1.2
2,273,560	+				+1.7
2,273,560	+				+0.6
2,273,561	-				-1.3
2,273,564	+				+0.2
2,273,564	+				-1.8
2,273,564	+				-2.1
2,273,565	-				+2.2
2,273,565	-				-1.3
2,273,565	-				-2.2
2,273,565	-				-1.4
2,273,577	+				+0.3
2,273,577	+				-2.5
2,273,577	+				-1.5
2,273,578	-				-2.2
2,273,578	-				-0.5
2,273,578	-				+2.0
2,273,578	-				-2.3
2,273,578	-				+0.2
2,273,578	-				-1.3
2,273,578	-				-0.8
2,273,589	+				-1.1
2,273,590	-				-2.3
2,273,604	+				+0.5
2,273,604	+				-0.1
2,273,632	-		EFB2_02134	0.14	-0.2
2,273,662	+		EFB2_02134	0.20	-1.0
2,273,670	+		EFB2_02134	0.22	-2.0
2,273,699	-		EFB2_02134	0.28	-1.1
2,273,699	-		EFB2_02134	0.28	-0.9
2,273,729	+		EFB2_02134	0.34	-0.4
2,273,729	+		EFB2_02134	0.34	+0.2
2,273,846	+		EFB2_02134	0.59	+0.7
2,273,863	-		EFB2_02134	0.62	-2.6
2,273,879	+		EFB2_02134	0.66	-2.7
2,273,880	-		EFB2_02134	0.66	+0.2
2,273,902	-		EFB2_02134	0.70	+0.3
2,273,931	+		EFB2_02134	0.77	-0.3
2,273,931	+		EFB2_02134	0.77	-1.4
2,273,931	+		EFB2_02134	0.77	+2.1
2,273,932	-		EFB2_02134	0.77	-4.1
2,273,932	-		EFB2_02134	0.77	+0.4
2,273,959	+		EFB2_02134	0.82	+1.2
2,273,960	-		EFB2_02134	0.83	-1.9
2,273,968	+		EFB2_02134	0.84	-0.3
2,273,968	+		EFB2_02134	0.84	+2.7
2,273,968	+		EFB2_02134	0.84	-2.2
2,273,968	+		EFB2_02134	0.84	-1.9
2,273,968	+		EFB2_02134	0.84	-1.4
2,273,969	-		EFB2_02134	0.84	-1.3
2,273,969	-		EFB2_02134	0.84	-2.8
2,273,976	+		EFB2_02134	0.86	-0.4
2,273,976	+		EFB2_02134	0.86	-1.4
2,273,976	+		EFB2_02134	0.86	-4.0
2,273,976	+		EFB2_02134	0.86	-1.2
2,273,976	+		EFB2_02134	0.86	-0.4
2,273,976	+		EFB2_02134	0.86	-2.4
2,273,977	-		EFB2_02134	0.86	-2.7
2,273,977	-		EFB2_02134	0.86	-0.9
2,273,977	-		EFB2_02134	0.86	-1.6
2,273,977	-		EFB2_02134	0.86	-0.6
2,273,977	-		EFB2_02134	0.86	-3.0
2,273,977	-		EFB2_02134	0.86	-0.9
2,273,977	-		EFB2_02134	0.86	-1.0
2,274,003	+				+0.6
2,274,003	+				-1.3
2,274,003	+				-1.6
2,274,004	-				+0.5
2,274,023	+				+2.3
2,274,023	+				-3.1
2,274,023	+				-0.8
2,274,024	-				+1.6
2,274,024	-				-1.0
2,274,024	-				-0.9
2,274,024	-				-1.8
2,274,038	+				-2.6
2,274,038	+				+1.3
2,274,038	+				-1.8
2,274,038	+				+0.2
2,274,038	+				-0.6
2,274,038	+				-0.5
2,274,038	+				-0.4
2,274,038	+				+1.1
2,274,039	-				+0.2
2,274,039	-				-1.2
2,274,039	-				-2.2
2,274,040	+				-2.0
2,274,040	+				-0.8
2,274,040	+				-2.9
2,274,040	+				-2.9
2,274,040	+				+0.2
2,274,040	+				-2.0
2,274,040	+				+1.0
2,274,040	+				+0.6
2,274,040	+				+2.7
2,274,040	+				-0.8
2,274,040	+				-3.0
2,274,040	+				-0.7
2,274,040	+				+0.2
2,274,040	+				-1.3
2,274,040	+				-1.1
2,274,040	+				+0.2
2,274,040	+				-1.4
2,274,040	+				-0.8
2,274,040	+				+0.5
2,274,040	+				+2.6
2,274,041	-				-1.4
2,274,041	-				-2.1
2,274,041	-				-1.6
2,274,041	-				-1.1
2,274,041	-				-2.2
2,274,041	-				-2.5
2,274,041	-				+0.5
2,274,049	+				-1.4
2,274,049	+				-0.1
2,274,085	+		EFB2_02135	0.15	+1.5
2,274,085	+		EFB2_02135	0.15	-1.1
2,274,104	+		EFB2_02135	0.20	+0.2
2,274,104	+		EFB2_02135	0.20	-1.8
2,274,104	+		EFB2_02135	0.20	-2.4
2,274,104	+		EFB2_02135	0.20	+1.6
2,274,107	+		EFB2_02135	0.21	+2.0
2,274,107	+		EFB2_02135	0.21	+0.6
2,274,107	+		EFB2_02135	0.21	+2.6
2,274,107	+		EFB2_02135	0.21	+0.2
2,274,107	+		EFB2_02135	0.21	+1.8
2,274,107	+		EFB2_02135	0.21	-0.2
2,274,108	-		EFB2_02135	0.21	-0.0
2,274,108	-		EFB2_02135	0.21	-0.2
2,274,116	+		EFB2_02135	0.23	-2.8
2,274,116	+		EFB2_02135	0.23	-0.9
2,274,116	+		EFB2_02135	0.23	-1.7
2,274,116	+		EFB2_02135	0.23	-2.1
2,274,116	+		EFB2_02135	0.23	-0.2
2,274,116	+		EFB2_02135	0.23	+1.2
2,274,117	-		EFB2_02135	0.23	+1.1
2,274,117	-		EFB2_02135	0.23	+0.6
2,274,117	-		EFB2_02135	0.23	-0.2
2,274,117	-		EFB2_02135	0.23	-1.6
2,274,117	-		EFB2_02135	0.23	+0.7
2,274,117	-		EFB2_02135	0.23	+0.7
2,274,117	-		EFB2_02135	0.23	-2.9
2,274,117	-		EFB2_02135	0.23	+0.4
2,274,150	+		EFB2_02135	0.32	-2.2
2,274,151	-		EFB2_02135	0.32	-1.6
2,274,220	+		EFB2_02135	0.49	+1.6
2,274,220	+		EFB2_02135	0.49	-2.3
2,274,221	-		EFB2_02135	0.50	+1.1
2,274,221	-		EFB2_02135	0.50	-0.7
2,274,221	-		EFB2_02135	0.50	-0.3
2,274,221	-		EFB2_02135	0.50	+0.3
2,274,221	-		EFB2_02135	0.50	+1.7
2,274,222	+		EFB2_02135	0.50	-0.1
2,274,223	-		EFB2_02135	0.50	-4.3
2,274,223	-		EFB2_02135	0.50	+1.2
2,274,223	-		EFB2_02135	0.50	-2.8
2,274,283	+		EFB2_02135	0.65	+0.6
2,274,284	-		EFB2_02135	0.66	-3.2
2,274,322	+		EFB2_02135	0.75	+0.2
2,274,322	+		EFB2_02135	0.75	+1.1
2,274,323	-		EFB2_02135	0.76	-2.0
2,274,343	+		EFB2_02135	0.81	-2.0
2,274,343	+		EFB2_02135	0.81	+1.2
2,274,343	+		EFB2_02135	0.81	-0.2
2,274,344	-		EFB2_02135	0.81	+1.0
2,274,344	-		EFB2_02135	0.81	-2.8
2,274,344	-		EFB2_02135	0.81	+2.0
2,274,371	-		EFB2_02135	0.88	+0.2
2,274,372	+		EFB2_02135	0.88	-0.8
2,274,372	+		EFB2_02135	0.88	-2.7
2,274,372	+		EFB2_02135	0.88	+0.7
2,274,372	+		EFB2_02135	0.88	+0.5
2,274,372	+		EFB2_02135	0.88	-1.9
2,274,372	+		EFB2_02135	0.88	-2.0
2,274,372	+		EFB2_02135	0.88	-1.0
2,274,372	+		EFB2_02135	0.88	+1.6
2,274,372	+		EFB2_02135	0.88	+0.1
2,274,372	+		EFB2_02135	0.88	-2.6
2,274,372	+		EFB2_02135	0.88	-1.8
2,274,372	+		EFB2_02135	0.88	+0.4
2,274,372	+		EFB2_02135	0.88	+0.1
2,274,372	+		EFB2_02135	0.88	-0.0
2,274,372	+		EFB2_02135	0.88	+1.5
2,274,372	+		EFB2_02135	0.88	-2.4
2,274,372	+		EFB2_02135	0.88	+0.4
2,274,372	+		EFB2_02135	0.88	-1.3
2,274,372	+		EFB2_02135	0.88	+0.9
2,274,372	+		EFB2_02135	0.88	+0.0
2,274,372	+		EFB2_02135	0.88	-1.9
2,274,373	-		EFB2_02135	0.88	+0.8
2,274,373	-		EFB2_02135	0.88	-1.1
2,274,373	-		EFB2_02135	0.88	-2.2
2,274,373	-		EFB2_02135	0.88	-1.2
2,274,373	-		EFB2_02135	0.88	-1.2
2,274,373	-		EFB2_02135	0.88	-2.8
2,274,373	-		EFB2_02135	0.88	+0.1
2,274,373	-		EFB2_02135	0.88	+1.4
2,274,373	-		EFB2_02135	0.88	+0.7
2,274,373	-		EFB2_02135	0.88	-0.0
2,274,398	-				-2.5
2,274,449	+				+2.0
2,274,449	+				-2.5
2,274,450	-				-0.0
2,274,450	-				-1.3
2,274,468	-				+1.1
2,274,496	+				-0.6
2,274,497	-				-2.5
2,274,515	+				+0.6
2,274,516	-				+0.8
2,274,560	+				+1.0
2,274,560	+				+0.2
2,274,560	+				+1.2
2,274,561	-				+0.8
2,274,561	-				-0.5
2,274,561	-				-0.1
2,274,561	-				-0.1