Strain Fitness in Escherichia fergusonii Becca around EFB2_00841

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
859,056	+		EFB2_00840	0.69	+1.0
859,057	-		EFB2_00840	0.69	-2.4
859,095	+		EFB2_00840	0.72	-0.5
859,095	+		EFB2_00840	0.72	+0.2
859,095	+		EFB2_00840	0.72	-0.6
859,095	+		EFB2_00840	0.72	-0.6
859,096	-		EFB2_00840	0.72	+0.7
859,096	-		EFB2_00840	0.72	-0.9
859,096	-		EFB2_00840	0.72	+0.7
859,118	+		EFB2_00840	0.73	+0.2
859,118	+		EFB2_00840	0.73	-2.0
859,118	+		EFB2_00840	0.73	-0.5
859,118	+		EFB2_00840	0.73	-0.7
859,119	-		EFB2_00840	0.73	+0.4
859,119	-		EFB2_00840	0.73	-3.9
859,119	-		EFB2_00840	0.73	+0.5
859,119	-		EFB2_00840	0.73	-1.0
859,122	+		EFB2_00840	0.73	+0.5
859,122	+		EFB2_00840	0.73	-1.0
859,122	+		EFB2_00840	0.73	-1.2
859,122	-		EFB2_00840	0.73	+2.0
859,123	-		EFB2_00840	0.73	+1.5
859,123	-		EFB2_00840	0.73	-2.7
859,123	-		EFB2_00840	0.73	-3.1
859,123	-		EFB2_00840	0.73	+0.6
859,123	-		EFB2_00840	0.73	-0.3
859,123	-		EFB2_00840	0.73	+1.4
859,123	-		EFB2_00840	0.73	-0.5
859,123	-		EFB2_00840	0.73	+0.5
859,140	-		EFB2_00840	0.74	+1.7
859,183	+		EFB2_00840	0.77	-0.2
859,183	+		EFB2_00840	0.77	+1.8
859,183	+		EFB2_00840	0.77	-0.2
859,183	+		EFB2_00840	0.77	+0.2
859,183	+		EFB2_00840	0.77	+0.1
859,184	-		EFB2_00840	0.77	-0.9
859,184	-		EFB2_00840	0.77	-0.2
859,224	+		EFB2_00840	0.79	+1.8
859,224	+		EFB2_00840	0.79	+0.4
859,224	+		EFB2_00840	0.79	-3.3
859,225	-		EFB2_00840	0.79	-3.0
859,225	-		EFB2_00840	0.79	-0.4
859,394	+		EFB2_00840	0.89	+0.3
859,394	+		EFB2_00840	0.89	-0.6
859,395	-		EFB2_00840	0.89	+4.5
859,422	+				-0.1
859,422	+				-0.1
859,422	+				+0.7
859,423	-				-3.4
859,481	-				-1.4
859,524	+				+1.2
859,524	+				+0.4
859,543	+				+0.6
859,543	+				+0.8
859,543	+				-0.2
859,543	+				+0.4
859,543	+				-1.9
859,543	+				+0.3
859,544	-				-3.3
859,544	-				+0.2
859,544	-				-3.4
859,544	-				+0.7
859,544	-				-1.9
859,544	-				+0.9
859,544	-				+1.0
859,544	-				+1.7
859,544	-				+0.3
859,544	-				+0.1
859,562	+				-1.7
859,562	+				-0.9
859,570	+				+0.5
859,596	-				-0.3
859,598	+				+1.3
859,630	+				+1.0
859,631	-				+0.2
859,673	+				+1.5
859,755	+				+0.2
859,788	+				-0.5
859,788	+				-2.2
859,842	+				+0.7
859,843	-				+0.5
860,028	+				+0.5
860,029	-				-3.0
860,075	-				-0.0
860,075	-				+0.9
860,077	-				+1.4
860,169	-				+0.3
860,259	+				+0.4
860,259	+				+0.4
860,260	-				-2.0
860,260	-				+0.6
860,260	-				-1.7
860,260	-				+1.6
860,319	+				-0.7
860,319	+				+0.8
860,370	+				-1.9
860,370	+				-3.9
860,370	+				+0.7
860,370	+				-1.4
860,370	+				-0.5
860,371	-				-0.7
860,371	-				-0.7
860,376	+				+1.1
860,376	+				-4.2
860,376	+				+1.5
860,377	-				-0.4
860,377	-				-2.4
860,400	+				-2.5
860,400	+				-3.2
860,400	+				-0.6
860,401	-				-1.3
860,401	-				-0.1
860,406	+				-2.5
860,406	+				-1.6
860,406	+				-0.1
860,406	+				-3.8
860,407	-				+1.7
860,407	-				-2.6
860,411	+				-0.1
860,418	+				-0.7
860,418	+				+2.0
860,442	+				-0.1
860,443	-				+0.2
860,554	-		EFB2_00841	0.11	+1.5
860,554	-		EFB2_00841	0.11	-0.0
860,554	-		EFB2_00841	0.11	-0.6
860,625	+		EFB2_00841	0.12	-2.1
860,625	+		EFB2_00841	0.12	+0.4
860,625	+		EFB2_00841	0.12	-2.1
860,625	+		EFB2_00841	0.12	+0.7
860,625	+		EFB2_00841	0.12	-1.3
860,668	+		EFB2_00841	0.13	-3.4
860,668	+		EFB2_00841	0.13	-0.1
860,668	+		EFB2_00841	0.13	-0.9
860,668	+		EFB2_00841	0.13	+0.6
860,668	+		EFB2_00841	0.13	-0.9
860,668	+		EFB2_00841	0.13	-0.9
860,668	+		EFB2_00841	0.13	-0.1
860,668	+		EFB2_00841	0.13	+0.2
860,668	+		EFB2_00841	0.13	+1.3
860,669	-		EFB2_00841	0.13	-1.6
860,669	-		EFB2_00841	0.13	+1.6
860,669	-		EFB2_00841	0.13	-0.7
860,669	-		EFB2_00841	0.13	+0.8
860,669	-		EFB2_00841	0.13	-0.9
860,669	-		EFB2_00841	0.13	+0.6
860,669	-		EFB2_00841	0.13	-1.8
860,670	+		EFB2_00841	0.13	-0.7
860,670	+		EFB2_00841	0.13	+0.6
860,670	+		EFB2_00841	0.13	+0.6
860,670	+		EFB2_00841	0.13	-0.1
860,670	+		EFB2_00841	0.13	+1.5
860,671	-		EFB2_00841	0.13	+0.1
860,671	-		EFB2_00841	0.13	-0.5
860,745	+		EFB2_00841	0.15	-0.1
860,746	-		EFB2_00841	0.15	-0.1
860,746	-		EFB2_00841	0.15	-1.0
860,746	-		EFB2_00841	0.15	-0.6
860,763	+		EFB2_00841	0.15	-1.3
860,763	+		EFB2_00841	0.15	-1.3
860,763	+		EFB2_00841	0.15	+0.3
860,763	+		EFB2_00841	0.15	+0.7
860,763	+		EFB2_00841	0.15	+1.8
860,763	+		EFB2_00841	0.15	+0.4
860,763	+		EFB2_00841	0.15	+0.9
860,763	+		EFB2_00841	0.15	+1.9
860,764	-		EFB2_00841	0.16	+0.4
860,764	-		EFB2_00841	0.16	-2.0
860,764	-		EFB2_00841	0.16	+0.6
860,848	+		EFB2_00841	0.17	+0.7
860,849	-		EFB2_00841	0.17	-0.4
860,849	-		EFB2_00841	0.17	+1.2
860,849	-		EFB2_00841	0.17	-0.2
860,854	+		EFB2_00841	0.17	-1.3
860,855	-		EFB2_00841	0.18	-2.4
860,855	-		EFB2_00841	0.18	+0.2
860,855	-		EFB2_00841	0.18	+2.6
860,929	+		EFB2_00841	0.19	-1.0
860,929	+		EFB2_00841	0.19	-0.5
860,929	+		EFB2_00841	0.19	-0.1
860,929	+		EFB2_00841	0.19	-0.2
860,929	+		EFB2_00841	0.19	+0.7
860,929	+		EFB2_00841	0.19	-2.4
860,929	+		EFB2_00841	0.19	+0.0
860,929	+		EFB2_00841	0.19	-0.1
860,929	+		EFB2_00841	0.19	-0.0
860,930	-		EFB2_00841	0.19	+0.4
860,930	-		EFB2_00841	0.19	+0.2
860,930	-		EFB2_00841	0.19	+0.7
860,932	+		EFB2_00841	0.19	-0.6
860,932	+		EFB2_00841	0.19	-0.1
860,932	+		EFB2_00841	0.19	-0.2
860,932	+		EFB2_00841	0.19	+0.5
860,932	+		EFB2_00841	0.19	-1.6
860,932	+		EFB2_00841	0.19	-0.0
860,932	+		EFB2_00841	0.19	-1.6
860,932	+		EFB2_00841	0.19	+0.5
860,932	+		EFB2_00841	0.19	-0.4
860,932	+		EFB2_00841	0.19	+1.5
860,933	-		EFB2_00841	0.19	+0.5
860,933	-		EFB2_00841	0.19	-3.5
860,933	-		EFB2_00841	0.19	-1.4
860,933	-		EFB2_00841	0.19	+0.0
860,933	-		EFB2_00841	0.19	+0.1
860,933	-		EFB2_00841	0.19	-1.4
860,933	-		EFB2_00841	0.19	-1.8
860,933	-		EFB2_00841	0.19	+1.5
860,933	-		EFB2_00841	0.19	+1.8
860,954	+		EFB2_00841	0.20	+2.3
860,954	+		EFB2_00841	0.20	+0.4
860,954	+		EFB2_00841	0.20	-3.3
860,955	-		EFB2_00841	0.20	+0.6
860,955	-		EFB2_00841	0.20	-2.7
860,982	+		EFB2_00841	0.20	+0.2
860,982	+		EFB2_00841	0.20	-0.0
860,982	+		EFB2_00841	0.20	-0.3
860,982	+		EFB2_00841	0.20	-2.1
860,982	+		EFB2_00841	0.20	-2.5
860,982	+		EFB2_00841	0.20	+1.4
860,983	-		EFB2_00841	0.20	+0.2
860,983	-		EFB2_00841	0.20	+0.8
860,983	-		EFB2_00841	0.20	+0.5
860,983	-		EFB2_00841	0.20	-3.3
861,015	+		EFB2_00841	0.21	+0.2
861,015	+		EFB2_00841	0.21	+0.8
861,035	+		EFB2_00841	0.21	-0.5
861,035	+		EFB2_00841	0.21	+0.3
861,035	+		EFB2_00841	0.21	-1.3
861,035	+		EFB2_00841	0.21	+0.6
861,035	+		EFB2_00841	0.21	+0.1
861,035	+		EFB2_00841	0.21	-3.1
861,035	+		EFB2_00841	0.21	+0.5
861,035	+		EFB2_00841	0.21	-2.3
861,035	+		EFB2_00841	0.21	-0.4
861,035	+		EFB2_00841	0.21	-1.5
861,036	-		EFB2_00841	0.21	-0.7
861,036	-		EFB2_00841	0.21	+3.0
861,036	-		EFB2_00841	0.21	-0.2
861,036	-		EFB2_00841	0.21	+1.7
861,036	-		EFB2_00841	0.21	+0.1
861,036	-		EFB2_00841	0.21	+2.7
861,036	-		EFB2_00841	0.21	+0.8
861,045	+		EFB2_00841	0.22	+0.5
861,045	+		EFB2_00841	0.22	-2.1
861,045	+		EFB2_00841	0.22	-2.8
861,045	+		EFB2_00841	0.22	-2.5
861,045	+		EFB2_00841	0.22	-1.6
861,045	+		EFB2_00841	0.22	-0.5
861,045	+		EFB2_00841	0.22	-0.8
861,046	-		EFB2_00841	0.22	+1.3
861,046	-		EFB2_00841	0.22	+3.1
861,046	-		EFB2_00841	0.22	-1.0
861,046	-		EFB2_00841	0.22	+0.7
861,046	-		EFB2_00841	0.22	+0.2
861,097	-		EFB2_00841	0.23	-2.4
861,138	+		EFB2_00841	0.24	-0.1
861,138	+		EFB2_00841	0.24	-0.4
861,138	+		EFB2_00841	0.24	-0.2
861,138	+		EFB2_00841	0.24	-0.0
861,138	+		EFB2_00841	0.24	+0.8
861,138	+		EFB2_00841	0.24	+0.7
861,138	+		EFB2_00841	0.24	-1.0
861,138	+		EFB2_00841	0.24	-3.3
861,139	-		EFB2_00841	0.24	+0.5
861,139	-		EFB2_00841	0.24	+0.4
861,139	-		EFB2_00841	0.24	+0.0
861,139	-		EFB2_00841	0.24	-0.9
861,164	+		EFB2_00841	0.24	-0.6
861,164	+		EFB2_00841	0.24	-0.6
861,164	+		EFB2_00841	0.24	-0.1
861,164	+		EFB2_00841	0.24	-1.9
861,164	+		EFB2_00841	0.24	+0.9
861,164	+		EFB2_00841	0.24	+1.9
861,164	+		EFB2_00841	0.24	+1.4
861,165	-		EFB2_00841	0.24	+0.1
861,165	-		EFB2_00841	0.24	-1.2
861,165	-		EFB2_00841	0.24	-0.2
861,165	-		EFB2_00841	0.24	-0.6
861,165	-		EFB2_00841	0.24	+0.0
861,165	-		EFB2_00841	0.24	-3.6
861,165	-		EFB2_00841	0.24	+1.1
861,165	-		EFB2_00841	0.24	+1.7
861,279	+		EFB2_00841	0.27	-0.9
861,280	-		EFB2_00841	0.27	+0.6
861,291	+		EFB2_00841	0.27	+0.2
861,292	-		EFB2_00841	0.27	-1.5
861,292	-		EFB2_00841	0.27	+1.1
861,387	+		EFB2_00841	0.29	-0.5
861,388	-		EFB2_00841	0.29	+2.1
861,411	+		EFB2_00841	0.30	-1.8
861,411	+		EFB2_00841	0.30	-1.3
861,412	-		EFB2_00841	0.30	-2.5
861,414	+		EFB2_00841	0.30	-2.7
861,414	+		EFB2_00841	0.30	+0.2
861,414	+		EFB2_00841	0.30	-2.2
861,415	-		EFB2_00841	0.30	-0.2
861,442	+		EFB2_00841	0.30	+1.0
861,442	+		EFB2_00841	0.30	+0.4
861,442	+		EFB2_00841	0.30	+1.9
861,442	+		EFB2_00841	0.30	-3.6
861,442	+		EFB2_00841	0.30	+0.0
861,442	+		EFB2_00841	0.30	-3.7
861,442	+		EFB2_00841	0.30	+0.0
861,443	-		EFB2_00841	0.30	+0.2
861,443	-		EFB2_00841	0.30	+0.7
861,443	-		EFB2_00841	0.30	+0.7
861,443	-		EFB2_00841	0.30	+1.4
861,443	-		EFB2_00841	0.30	+1.5
861,443	-		EFB2_00841	0.30	+0.2
861,443	-		EFB2_00841	0.30	+0.8
861,443	-		EFB2_00841	0.30	-0.2
861,443	-		EFB2_00841	0.30	-0.7
861,443	-		EFB2_00841	0.30	+0.1
861,443	-		EFB2_00841	0.30	+1.9
861,443	-		EFB2_00841	0.30	+1.2
861,443	-		EFB2_00841	0.30	-0.4
861,480	+		EFB2_00841	0.31	+1.1
861,480	+		EFB2_00841	0.31	+0.5
861,480	+		EFB2_00841	0.31	-0.0
861,480	+		EFB2_00841	0.31	+0.9
861,480	+		EFB2_00841	0.31	-1.1
861,490	+		EFB2_00841	0.31	-1.6
861,490	+		EFB2_00841	0.31	+1.0
861,490	+		EFB2_00841	0.31	+1.7
861,490	+		EFB2_00841	0.31	+1.2
861,490	+		EFB2_00841	0.31	+1.1
861,490	+		EFB2_00841	0.31	-0.8
861,490	+		EFB2_00841	0.31	+0.0
861,491	-		EFB2_00841	0.31	+0.1
861,491	-		EFB2_00841	0.31	-0.8
861,491	-		EFB2_00841	0.31	+0.5
861,491	-		EFB2_00841	0.31	+1.9
861,491	-		EFB2_00841	0.31	+0.8
861,527	+		EFB2_00841	0.32	+0.3
861,527	+		EFB2_00841	0.32	+1.3
861,527	+		EFB2_00841	0.32	-0.7
861,527	+		EFB2_00841	0.32	+1.4
861,527	+		EFB2_00841	0.32	+0.8
861,527	+		EFB2_00841	0.32	-0.2
861,528	-		EFB2_00841	0.32	-0.0
861,528	-		EFB2_00841	0.32	-0.3
861,528	-		EFB2_00841	0.32	-0.4
861,528	-		EFB2_00841	0.32	-0.7
861,528	-		EFB2_00841	0.32	+0.3
861,531	+		EFB2_00841	0.32	-0.7
861,531	+		EFB2_00841	0.32	+0.8
861,531	+		EFB2_00841	0.32	+2.7
861,531	+		EFB2_00841	0.32	-3.9
861,531	+		EFB2_00841	0.32	-4.2
861,531	+		EFB2_00841	0.32	+1.2
861,532	-		EFB2_00841	0.32	-0.0
861,532	-		EFB2_00841	0.32	-2.1
861,532	-		EFB2_00841	0.32	+0.9
861,532	-		EFB2_00841	0.32	+1.1
861,532	-		EFB2_00841	0.32	+0.7
861,568	-		EFB2_00841	0.33	-1.2
861,574	-		EFB2_00841	0.33	-0.6
861,580	+		EFB2_00841	0.33	+1.1
861,581	-		EFB2_00841	0.33	-0.4
861,631	+		EFB2_00841	0.35	+0.4
861,631	+		EFB2_00841	0.35	-0.4
861,631	+		EFB2_00841	0.35	+0.5
861,631	+		EFB2_00841	0.35	-1.9
861,631	+		EFB2_00841	0.35	-1.9
861,631	+		EFB2_00841	0.35	+0.0
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865,494	-		EFB2_00842	0.88	-0.4
865,494	-		EFB2_00842	0.88	+1.1
865,494	-		EFB2_00842	0.88	+0.6
865,494	-		EFB2_00842	0.88	-1.7
865,505	-		EFB2_00842	0.89	+1.4
865,560	+				-1.2
865,561	-				+1.6
865,561	-				+1.2
865,561	-				+0.9
865,571	+				-0.3
865,576	-				+0.2
865,596	-				-1.8