Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EFB2_00595 and EFB2_00596 are separated by 89 nucleotides EFB2_00596 and EFB2_00597 are separated by 153 nucleotides EFB2_00597 and EFB2_00598 are separated by 182 nucleotides
EFB2_00595: EFB2_00595 - Serine endoprotease DegS, at 602,833 to 603,900
_00595
EFB2_00596: EFB2_00596 - Periplasmic pH-dependent serine endoprotease DegQ, at 603,990 to 605,357
_00596
EFB2_00597: EFB2_00597 - Inner membrane protein YhcB, at 605,511 to 605,909
_00597
EFB2_00598: EFB2_00598 - Cell division protein ZapE, at 606,092 to 607,219
_00598
Position (kb) 603
604
605
606 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 603.052 kb on + strand, within EFB2_00595 at 603.052 kb on + strand, within EFB2_00595 at 603.052 kb on + strand, within EFB2_00595 at 603.053 kb on - strand, within EFB2_00595 at 603.128 kb on + strand, within EFB2_00595 at 603.128 kb on + strand, within EFB2_00595 at 603.128 kb on + strand, within EFB2_00595 at 603.128 kb on + strand, within EFB2_00595 at 603.128 kb on + strand, within EFB2_00595 at 603.128 kb on + strand, within EFB2_00595 at 603.128 kb on + strand, within EFB2_00595 at 603.128 kb on + strand, within EFB2_00595 at 603.128 kb on + strand, within EFB2_00595 at 603.129 kb on - strand, within EFB2_00595 at 603.129 kb on - strand, within EFB2_00595 at 603.129 kb on - strand, within EFB2_00595 at 603.129 kb on - strand, within EFB2_00595 at 603.129 kb on - strand, within EFB2_00595 at 603.129 kb on - strand, within EFB2_00595 at 603.129 kb on - strand, within EFB2_00595 at 603.129 kb on - strand, within EFB2_00595 at 603.129 kb on - strand, within EFB2_00595 at 603.129 kb on - strand, within EFB2_00595 at 603.884 kb on - strand at 603.884 kb on - strand at 603.884 kb on - strand at 603.884 kb on - strand at 603.884 kb on - strand at 603.884 kb on - strand at 603.938 kb on + strand at 603.938 kb on + strand at 603.938 kb on + strand at 603.938 kb on + strand at 603.939 kb on - strand at 603.939 kb on - strand at 603.939 kb on - strand at 603.939 kb on - strand at 603.939 kb on - strand at 603.939 kb on - strand at 603.939 kb on - strand at 603.939 kb on - strand at 603.939 kb on - strand at 603.939 kb on - strand at 603.939 kb on - strand at 603.983 kb on + strand at 603.991 kb on + strand at 603.999 kb on + strand at 603.999 kb on + strand at 603.999 kb on + strand at 603.999 kb on + strand at 603.999 kb on + strand at 603.999 kb on + strand at 604.000 kb on - strand at 604.000 kb on - strand at 604.000 kb on - strand at 604.000 kb on - strand at 604.001 kb on + strand at 604.002 kb on + strand at 604.002 kb on + strand at 604.002 kb on + strand at 604.002 kb on + strand at 604.002 kb on + strand at 604.002 kb on + strand at 604.002 kb on + strand at 604.002 kb on + strand at 604.002 kb on + strand at 604.002 kb on + strand at 604.002 kb on + strand at 604.002 kb on + strand at 604.002 kb on + strand at 604.002 kb on + strand at 604.002 kb on + strand at 604.002 kb on + strand at 604.002 kb on + strand at 604.002 kb on + strand at 604.002 kb on + strand at 604.002 kb on + strand at 604.003 kb on - strand at 604.003 kb on - strand at 604.003 kb on - strand at 604.003 kb on - strand at 604.003 kb on - strand at 604.003 kb on - strand at 604.003 kb on - strand at 604.003 kb on - strand at 604.003 kb on - strand at 604.006 kb on + strand at 604.006 kb on + strand at 604.006 kb on + strand at 604.006 kb on + strand at 604.007 kb on - strand at 604.007 kb on - strand at 604.007 kb on - strand at 604.007 kb on - strand at 604.026 kb on + strand at 604.027 kb on - strand at 604.027 kb on - strand at 604.071 kb on - strand at 604.181 kb on + strand, within EFB2_00596 at 604.181 kb on + strand, within EFB2_00596 at 604.181 kb on + strand, within EFB2_00596 at 604.181 kb on + strand, within EFB2_00596 at 604.182 kb on - strand, within EFB2_00596 at 604.184 kb on + strand, within EFB2_00596 at 604.184 kb on + strand, within EFB2_00596 at 604.184 kb on + strand, within EFB2_00596 at 604.185 kb on - strand, within EFB2_00596 at 604.185 kb on - strand, within EFB2_00596 at 604.185 kb on - strand, within EFB2_00596 at 604.185 kb on - strand, within EFB2_00596 at 604.185 kb on - strand, within EFB2_00596 at 604.185 kb on - strand, within EFB2_00596 at 604.203 kb on + strand, within EFB2_00596 at 604.203 kb on + strand, within EFB2_00596 at 604.203 kb on + strand, within EFB2_00596 at 604.203 kb on + strand, within EFB2_00596 at 604.204 kb on - strand, within EFB2_00596 at 604.204 kb on - strand, within EFB2_00596 at 604.204 kb on - strand, within EFB2_00596 at 604.204 kb on - strand, within EFB2_00596 at 604.296 kb on + strand, within EFB2_00596 at 604.296 kb on + strand, within EFB2_00596 at 604.296 kb on + strand, within EFB2_00596 at 604.297 kb on - strand, within EFB2_00596 at 604.297 kb on - strand, within EFB2_00596 at 604.388 kb on + strand, within EFB2_00596 at 604.388 kb on + strand, within EFB2_00596 at 604.388 kb on + strand, within EFB2_00596 at 604.388 kb on + strand, within EFB2_00596 at 604.388 kb on + strand, within EFB2_00596 at 604.388 kb on + strand, within EFB2_00596 at 604.389 kb on - strand, within EFB2_00596 at 604.389 kb on - strand, within EFB2_00596 at 604.389 kb on - strand, within EFB2_00596 at 604.389 kb on - strand, within EFB2_00596 at 604.389 kb on - strand, within EFB2_00596 at 604.389 kb on - strand, within EFB2_00596 at 604.389 kb on - strand, within EFB2_00596 at 604.415 kb on + strand, within EFB2_00596 at 604.416 kb on - strand, within EFB2_00596 at 604.418 kb on + strand, within EFB2_00596 at 604.418 kb on + strand, within EFB2_00596 at 604.418 kb on + strand, within EFB2_00596 at 604.418 kb on + strand, within EFB2_00596 at 604.418 kb on + strand, within EFB2_00596 at 604.419 kb on - strand, within EFB2_00596 at 604.419 kb on - strand, within EFB2_00596 at 604.419 kb on - strand, within EFB2_00596 at 604.421 kb on + strand, within EFB2_00596 at 604.422 kb on - strand, within EFB2_00596 at 604.552 kb on - strand, within EFB2_00596 at 604.552 kb on - strand, within EFB2_00596 at 604.610 kb on + strand, within EFB2_00596 at 604.610 kb on + strand, within EFB2_00596 at 604.610 kb on + strand, within EFB2_00596 at 604.610 kb on + strand, within EFB2_00596 at 604.610 kb on + strand, within EFB2_00596 at 604.611 kb on - strand, within EFB2_00596 at 604.611 kb on - strand, within EFB2_00596 at 604.611 kb on - strand, within EFB2_00596 at 604.611 kb on - strand, within EFB2_00596 at 604.613 kb on + strand, within EFB2_00596 at 604.613 kb on + strand, within EFB2_00596 at 604.613 kb on + strand, within EFB2_00596 at 604.614 kb on - strand, within EFB2_00596 at 604.614 kb on - strand, within EFB2_00596 at 604.683 kb on + strand, within EFB2_00596 at 604.683 kb on + strand, within EFB2_00596 at 604.683 kb on + strand, within EFB2_00596 at 604.683 kb on + strand, within EFB2_00596 at 604.684 kb on - strand, within EFB2_00596 at 604.684 kb on - strand, within EFB2_00596 at 604.684 kb on - strand, within EFB2_00596 at 604.694 kb on + strand, within EFB2_00596 at 604.695 kb on - strand, within EFB2_00596 at 604.701 kb on + strand, within EFB2_00596 at 604.701 kb on + strand, within EFB2_00596 at 604.702 kb on - strand, within EFB2_00596 at 604.702 kb on - strand, within EFB2_00596 at 604.702 kb on - strand, within EFB2_00596 at 604.702 kb on - strand, within EFB2_00596 at 604.721 kb on + strand, within EFB2_00596 at 604.721 kb on + strand, within EFB2_00596 at 604.751 kb on + strand, within EFB2_00596 at 604.791 kb on + strand, within EFB2_00596 at 604.792 kb on - strand, within EFB2_00596 at 604.792 kb on - strand, within EFB2_00596 at 604.792 kb on - strand, within EFB2_00596 at 604.792 kb on - strand, within EFB2_00596 at 604.792 kb on - strand, within EFB2_00596 at 604.800 kb on + strand, within EFB2_00596 at 604.800 kb on + strand, within EFB2_00596 at 604.800 kb on + strand, within EFB2_00596 at 604.801 kb on - strand, within EFB2_00596 at 604.801 kb on - strand, within EFB2_00596 at 604.801 kb on - strand, within EFB2_00596 at 604.801 kb on - strand, within EFB2_00596 at 604.801 kb on - strand, within EFB2_00596 at 604.802 kb on + strand, within EFB2_00596 at 604.802 kb on + strand, within EFB2_00596 at 604.802 kb on + strand, within EFB2_00596 at 604.802 kb on + strand, within EFB2_00596 at 604.802 kb on + strand, within EFB2_00596 at 604.802 kb on + strand, within EFB2_00596 at 604.802 kb on + strand, within EFB2_00596 at 604.802 kb on + strand, within EFB2_00596 at 604.802 kb on + strand, within EFB2_00596 at 604.802 kb on + strand, within EFB2_00596 at 604.802 kb on + strand, within EFB2_00596 at 604.802 kb on + strand, within EFB2_00596 at 604.802 kb on + strand, within EFB2_00596 at 604.803 kb on - strand, within EFB2_00596 at 604.803 kb on - strand, within EFB2_00596 at 604.803 kb on - strand, within EFB2_00596 at 604.803 kb on - strand, within EFB2_00596 at 604.803 kb on - strand, within EFB2_00596 at 604.803 kb on - strand, within EFB2_00596 at 604.803 kb on - strand, within EFB2_00596 at 604.803 kb on - strand, within EFB2_00596 at 604.803 kb on - strand, within EFB2_00596 at 604.803 kb on - strand, within EFB2_00596 at 604.803 kb on - strand, within EFB2_00596 at 604.803 kb on - strand, within EFB2_00596 at 604.877 kb on + strand, within EFB2_00596 at 604.892 kb on + strand, within EFB2_00596 at 604.906 kb on - strand, within EFB2_00596 at 604.958 kb on + strand, within EFB2_00596 at 604.958 kb on + strand, within EFB2_00596 at 604.959 kb on - strand, within EFB2_00596 at 605.003 kb on + strand, within EFB2_00596 at 605.004 kb on - strand, within EFB2_00596 at 605.024 kb on + strand, within EFB2_00596 at 605.024 kb on + strand, within EFB2_00596 at 605.024 kb on + strand, within EFB2_00596 at 605.025 kb on - strand, within EFB2_00596 at 605.050 kb on + strand, within EFB2_00596 at 605.050 kb on + strand, within EFB2_00596 at 605.050 kb on + strand, within EFB2_00596 at 605.050 kb on + strand, within EFB2_00596 at 605.050 kb on + strand, within EFB2_00596 at 605.050 kb on + strand, within EFB2_00596 at 605.051 kb on - strand, within EFB2_00596 at 605.051 kb on - strand, within EFB2_00596 at 605.051 kb on - strand, within EFB2_00596 at 605.051 kb on - strand, within EFB2_00596 at 605.057 kb on + strand, within EFB2_00596 at 605.057 kb on + strand, within EFB2_00596 at 605.085 kb on + strand, within EFB2_00596 at 605.086 kb on - strand, within EFB2_00596 at 605.119 kb on - strand, within EFB2_00596 at 605.191 kb on - strand, within EFB2_00596 at 605.307 kb on + strand at 605.308 kb on - strand at 605.308 kb on - strand at 605.308 kb on - strand at 605.308 kb on - strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.319 kb on + strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.320 kb on - strand at 605.326 kb on - strand at 605.326 kb on - strand at 605.326 kb on - strand at 605.358 kb on + strand at 605.358 kb on + strand at 605.383 kb on + strand at 605.383 kb on + strand at 605.384 kb on - strand at 605.384 kb on - strand at 605.451 kb on + strand at 605.451 kb on + strand at 605.452 kb on - strand at 605.452 kb on - strand at 605.512 kb on + strand at 605.531 kb on + strand at 605.532 kb on - strand at 605.561 kb on - strand, within EFB2_00597 at 605.561 kb on - strand, within EFB2_00597 at 605.621 kb on + strand, within EFB2_00597 at 605.663 kb on + strand, within EFB2_00597 at 605.663 kb on + strand, within EFB2_00597 at 605.664 kb on - strand, within EFB2_00597 at 605.690 kb on - strand, within EFB2_00597 at 605.690 kb on - strand, within EFB2_00597 at 605.718 kb on - strand, within EFB2_00597 at 605.725 kb on - strand, within EFB2_00597 at 605.786 kb on + strand, within EFB2_00597 at 605.787 kb on - strand, within EFB2_00597 at 605.787 kb on - strand, within EFB2_00597 at 605.787 kb on - strand, within EFB2_00597 at 605.804 kb on - strand, within EFB2_00597 at 605.804 kb on - strand, within EFB2_00597 at 605.826 kb on + strand, within EFB2_00597 at 605.826 kb on + strand, within EFB2_00597 at 605.826 kb on + strand, within EFB2_00597 at 605.827 kb on - strand, within EFB2_00597 at 605.827 kb on - strand, within EFB2_00597 at 605.827 kb on - strand, within EFB2_00597 at 605.831 kb on + strand, within EFB2_00597 at 605.832 kb on - strand, within EFB2_00597 at 605.864 kb on + strand, within EFB2_00597 at 605.864 kb on + strand, within EFB2_00597 at 605.865 kb on - strand, within EFB2_00597 at 605.865 kb on - strand, within EFB2_00597 at 605.881 kb on - strand at 605.896 kb on + strand at 605.896 kb on + strand at 605.896 kb on + strand at 605.897 kb on - strand at 605.897 kb on - strand at 605.897 kb on - strand at 605.897 kb on - strand at 605.964 kb on + strand at 605.964 kb on + strand at 605.964 kb on + strand at 605.965 kb on - strand at 605.965 kb on - strand at 605.965 kb on - strand at 605.972 kb on + strand at 605.972 kb on + strand at 605.972 kb on + strand at 605.972 kb on + strand at 605.972 kb on + strand at 605.972 kb on + strand at 605.972 kb on + strand at 605.972 kb on + strand at 605.972 kb on + strand at 605.973 kb on - strand at 605.973 kb on - strand at 605.973 kb on - strand at 605.973 kb on - strand at 605.973 kb on - strand at 605.973 kb on - strand at 605.974 kb on + strand at 605.974 kb on + strand at 605.975 kb on - strand at 605.975 kb on - strand at 605.975 kb on - strand at 605.975 kb on - strand at 605.982 kb on - strand at 605.982 kb on - strand at 605.982 kb on - strand at 606.019 kb on - strand at 606.019 kb on - strand at 606.019 kb on - strand at 606.023 kb on + strand at 606.023 kb on + strand at 606.023 kb on + strand at 606.024 kb on - strand at 606.024 kb on - strand at 606.024 kb on - strand at 606.024 kb on - strand at 606.079 kb on + strand at 606.086 kb on - strand at 606.119 kb on + strand at 606.119 kb on + strand at 606.193 kb on + strand at 606.194 kb on - strand at 606.194 kb on - strand at 606.197 kb on + strand at 606.197 kb on + strand at 606.198 kb on - strand at 606.198 kb on - strand at 606.198 kb on - strand at 606.214 kb on + strand, within EFB2_00598 at 606.214 kb on + strand, within EFB2_00598 at 606.214 kb on + strand, within EFB2_00598 at 606.214 kb on + strand, within EFB2_00598 at 606.214 kb on + strand, within EFB2_00598 at 606.215 kb on - strand, within EFB2_00598 at 606.215 kb on - strand, within EFB2_00598 at 606.215 kb on - strand, within EFB2_00598 at 606.215 kb on - strand, within EFB2_00598 at 606.215 kb on - strand, within EFB2_00598 at 606.262 kb on + strand, within EFB2_00598 at 606.262 kb on + strand, within EFB2_00598 at 606.263 kb on - strand, within EFB2_00598 at 606.274 kb on + strand, within EFB2_00598 at 606.295 kb on + strand, within EFB2_00598 at 606.295 kb on + strand, within EFB2_00598 at 606.295 kb on + strand, within EFB2_00598 at 606.295 kb on + strand, within EFB2_00598 at 606.295 kb on + strand, within EFB2_00598 at 606.295 kb on + strand, within EFB2_00598 at 606.295 kb on + strand, within EFB2_00598 at 606.296 kb on - strand, within EFB2_00598 at 606.296 kb on - strand, within EFB2_00598 at 606.296 kb on - strand, within EFB2_00598 at 606.296 kb on - strand, within EFB2_00598 at 606.296 kb on - strand, within EFB2_00598 at 606.296 kb on - strand, within EFB2_00598 at 606.296 kb on - strand, within EFB2_00598 at 606.296 kb on - strand, within EFB2_00598 at 606.296 kb on - strand, within EFB2_00598 at 606.296 kb on - strand, within EFB2_00598 at 606.296 kb on - strand, within EFB2_00598 at 606.296 kb on - strand, within EFB2_00598 at 606.296 kb on - strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.312 kb on + strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.313 kb on - strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.314 kb on + strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.315 kb on - strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.316 kb on + strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.317 kb on - strand, within EFB2_00598 at 606.330 kb on + strand, within EFB2_00598 at 606.330 kb on + strand, within EFB2_00598 at 606.331 kb on - strand, within EFB2_00598 at 606.331 kb on - strand, within EFB2_00598 at 606.331 kb on - strand, within EFB2_00598
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) remove 603,052 + EFB2_00595 0.21 -1.3 603,052 + EFB2_00595 0.21 +2.5 603,052 + EFB2_00595 0.21 -0.6 603,053 - EFB2_00595 0.21 -0.8 603,128 + EFB2_00595 0.28 -2.2 603,128 + EFB2_00595 0.28 +0.4 603,128 + EFB2_00595 0.28 +0.6 603,128 + EFB2_00595 0.28 -0.1 603,128 + EFB2_00595 0.28 +0.9 603,128 + EFB2_00595 0.28 -1.4 603,128 + EFB2_00595 0.28 +2.4 603,128 + EFB2_00595 0.28 -2.9 603,128 + EFB2_00595 0.28 +0.2 603,129 - EFB2_00595 0.28 +1.4 603,129 - EFB2_00595 0.28 +3.0 603,129 - EFB2_00595 0.28 +0.4 603,129 - EFB2_00595 0.28 -2.5 603,129 - EFB2_00595 0.28 +2.1 603,129 - EFB2_00595 0.28 -0.6 603,129 - EFB2_00595 0.28 +0.3 603,129 - EFB2_00595 0.28 -3.4 603,129 - EFB2_00595 0.28 +2.2 603,129 - EFB2_00595 0.28 +1.0 603,884 - -4.1 603,884 - +1.8 603,884 - -1.7 603,884 - -0.1 603,884 - +1.1 603,884 - -0.9 603,938 + +0.2 603,938 + +2.0 603,938 + -0.8 603,938 + -1.5 603,939 - +1.0 603,939 - +1.6 603,939 - -0.1 603,939 - +1.1 603,939 - +0.4 603,939 - +0.7 603,939 - +1.5 603,939 - -2.9 603,939 - -0.7 603,939 - -3.3 603,939 - +0.9 603,983 + -0.8 603,991 + -0.4 603,999 + +0.4 603,999 + +0.3 603,999 + +0.5 603,999 + -2.8 603,999 + +0.5 603,999 + -1.4 604,000 - -2.9 604,000 - -0.1 604,000 - +0.3 604,000 - -0.0 604,001 + +0.7 604,002 + +0.6 604,002 + +0.2 604,002 + +1.2 604,002 + -0.1 604,002 + +1.1 604,002 + +1.8 604,002 + +2.0 604,002 + +0.7 604,002 + +0.9 604,002 + +0.9 604,002 + -0.7 604,002 + +0.8 604,002 + -0.9 604,002 + +0.6 604,002 + -0.2 604,002 + -0.0 604,002 + -0.4 604,002 + -1.3 604,002 + -2.9 604,002 + -1.5 604,003 - +1.1 604,003 - -0.5 604,003 - +0.6 604,003 - -3.5 604,003 - -0.0 604,003 - +0.4 604,003 - -0.9 604,003 - +0.4 604,003 - +1.8 604,006 + -2.0 604,006 + -2.9 604,006 + -2.8 604,006 + +0.9 604,007 - -0.6 604,007 - -1.3 604,007 - -3.4 604,007 - +1.5 604,026 + +0.2 604,027 - -1.0 604,027 - +1.1 604,071 - +1.6 604,181 + EFB2_00596 0.14 +0.6 604,181 + EFB2_00596 0.14 +0.5 604,181 + EFB2_00596 0.14 -0.7 604,181 + EFB2_00596 0.14 +0.4 604,182 - EFB2_00596 0.14 -0.5 604,184 + EFB2_00596 0.14 +1.0 604,184 + EFB2_00596 0.14 +0.4 604,184 + EFB2_00596 0.14 +0.5 604,185 - EFB2_00596 0.14 -1.1 604,185 - EFB2_00596 0.14 -2.3 604,185 - EFB2_00596 0.14 +0.5 604,185 - EFB2_00596 0.14 -0.6 604,185 - EFB2_00596 0.14 -1.6 604,185 - EFB2_00596 0.14 +1.7 604,203 + EFB2_00596 0.16 -0.2 604,203 + EFB2_00596 0.16 +1.2 604,203 + EFB2_00596 0.16 -5.0 604,203 + EFB2_00596 0.16 -0.3 604,204 - EFB2_00596 0.16 +1.0 604,204 - EFB2_00596 0.16 +1.7 604,204 - EFB2_00596 0.16 +0.3 604,204 - EFB2_00596 0.16 +0.2 604,296 + EFB2_00596 0.22 +0.3 604,296 + EFB2_00596 0.22 -3.0 604,296 + EFB2_00596 0.22 -0.1 604,297 - EFB2_00596 0.22 -1.2 604,297 - EFB2_00596 0.22 +2.0 604,388 + EFB2_00596 0.29 +0.8 604,388 + EFB2_00596 0.29 +1.2 604,388 + EFB2_00596 0.29 +1.2 604,388 + EFB2_00596 0.29 +0.3 604,388 + EFB2_00596 0.29 -0.3 604,388 + EFB2_00596 0.29 +0.0 604,389 - EFB2_00596 0.29 +0.2 604,389 - EFB2_00596 0.29 +0.8 604,389 - EFB2_00596 0.29 +2.6 604,389 - EFB2_00596 0.29 -0.8 604,389 - 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Or see this region's nucleotide sequence