Experiment: BHI 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03562 and BACOVA_03563 are separated by 91 nucleotides BACOVA_03563 and BACOVA_03564 are separated by 7 nucleotides BACOVA_03564 and BACOVA_03565 are separated by 134 nucleotides
BACOVA_03562: BACOVA_03562 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 339,278 to 343,339
_03562
BACOVA_03563: BACOVA_03563 - hypothetical protein, at 343,431 to 344,816
_03563
BACOVA_03564: BACOVA_03564 - RNA polymerase sigma-70 factor, at 344,824 to 345,333
_03564
BACOVA_03565: BACOVA_03565 - TonB-linked outer membrane protein, SusC/RagA family, at 345,468 to 348,704
_03565
Position (kb) 343
344
345 Strain fitness (log2 ratio) -2
-1
0
1
2 at 342.482 kb on + strand, within BACOVA_03562 at 342.485 kb on - strand, within BACOVA_03562 at 342.485 kb on - strand, within BACOVA_03562 at 342.532 kb on + strand, within BACOVA_03562 at 342.533 kb on - strand, within BACOVA_03562 at 342.533 kb on - strand, within BACOVA_03562 at 342.562 kb on - strand, within BACOVA_03562 at 342.580 kb on + strand, within BACOVA_03562 at 342.693 kb on + strand, within BACOVA_03562 at 342.697 kb on + strand, within BACOVA_03562 at 342.697 kb on + strand, within BACOVA_03562 at 342.698 kb on - strand, within BACOVA_03562 at 342.698 kb on - strand, within BACOVA_03562 at 342.698 kb on - strand, within BACOVA_03562 at 342.794 kb on - strand, within BACOVA_03562 at 342.803 kb on - strand, within BACOVA_03562 at 342.803 kb on - strand, within BACOVA_03562 at 342.820 kb on + strand, within BACOVA_03562 at 342.848 kb on + strand, within BACOVA_03562 at 342.850 kb on + strand, within BACOVA_03562 at 342.869 kb on + strand, within BACOVA_03562 at 342.869 kb on + strand, within BACOVA_03562 at 342.869 kb on + strand, within BACOVA_03562 at 342.869 kb on + strand, within BACOVA_03562 at 342.870 kb on - strand, within BACOVA_03562 at 342.870 kb on - strand, within BACOVA_03562 at 342.873 kb on + strand, within BACOVA_03562 at 342.874 kb on - strand, within BACOVA_03562 at 342.890 kb on + strand, within BACOVA_03562 at 342.891 kb on - strand, within BACOVA_03562 at 342.897 kb on + strand, within BACOVA_03562 at 342.897 kb on + strand, within BACOVA_03562 at 342.917 kb on - strand, within BACOVA_03562 at 342.986 kb on - strand at 342.991 kb on + strand at 342.991 kb on + strand at 342.991 kb on + strand at 342.992 kb on - strand at 342.995 kb on - strand at 343.002 kb on + strand at 343.003 kb on - strand at 343.075 kb on + strand at 343.076 kb on - strand at 343.113 kb on + strand at 343.136 kb on - strand at 343.136 kb on - strand at 343.159 kb on + strand at 343.211 kb on + strand at 343.211 kb on + strand at 343.213 kb on + strand at 343.217 kb on - strand at 343.259 kb on + strand at 343.271 kb on + strand at 343.334 kb on - strand at 343.338 kb on - strand at 343.360 kb on + strand at 343.360 kb on + strand at 343.361 kb on - strand at 343.361 kb on - strand at 343.389 kb on + strand at 343.390 kb on - strand at 343.391 kb on - strand at 343.407 kb on + strand at 343.410 kb on + strand at 343.410 kb on + strand at 343.424 kb on + strand at 343.424 kb on + strand at 343.520 kb on + strand at 343.541 kb on - strand at 343.541 kb on - strand at 343.546 kb on + strand at 343.608 kb on - strand, within BACOVA_03563 at 343.623 kb on + strand, within BACOVA_03563 at 343.623 kb on + strand, within BACOVA_03563 at 343.624 kb on - strand, within BACOVA_03563 at 343.624 kb on - strand, within BACOVA_03563 at 343.624 kb on - strand, within BACOVA_03563 at 343.626 kb on - strand, within BACOVA_03563 at 343.639 kb on + strand, within BACOVA_03563 at 343.640 kb on - strand, within BACOVA_03563 at 343.667 kb on - strand, within BACOVA_03563 at 343.671 kb on - strand, within BACOVA_03563 at 343.744 kb on + strand, within BACOVA_03563 at 343.745 kb on - strand, within BACOVA_03563 at 343.820 kb on - strand, within BACOVA_03563 at 343.820 kb on - strand, within BACOVA_03563 at 343.839 kb on - strand, within BACOVA_03563 at 343.839 kb on - strand, within BACOVA_03563 at 343.840 kb on + strand, within BACOVA_03563 at 343.862 kb on - strand, within BACOVA_03563 at 343.961 kb on - strand, within BACOVA_03563 at 343.975 kb on + strand, within BACOVA_03563 at 343.984 kb on + strand, within BACOVA_03563 at 344.004 kb on + strand, within BACOVA_03563 at 344.005 kb on - strand, within BACOVA_03563 at 344.073 kb on + strand, within BACOVA_03563 at 344.073 kb on + strand, within BACOVA_03563 at 344.074 kb on - strand, within BACOVA_03563 at 344.074 kb on - strand, within BACOVA_03563 at 344.082 kb on + strand, within BACOVA_03563 at 344.082 kb on + strand, within BACOVA_03563 at 344.083 kb on - strand, within BACOVA_03563 at 344.084 kb on + strand, within BACOVA_03563 at 344.084 kb on + strand, within BACOVA_03563 at 344.084 kb on + strand, within BACOVA_03563 at 344.085 kb on - strand, within BACOVA_03563 at 344.085 kb on - strand, within BACOVA_03563 at 344.085 kb on - strand, within BACOVA_03563 at 344.085 kb on - strand, within BACOVA_03563 at 344.085 kb on - strand, within BACOVA_03563 at 344.105 kb on + strand, within BACOVA_03563 at 344.110 kb on - strand, within BACOVA_03563 at 344.110 kb on - strand, within BACOVA_03563 at 344.144 kb on + strand, within BACOVA_03563 at 344.153 kb on + strand, within BACOVA_03563 at 344.185 kb on - strand, within BACOVA_03563 at 344.200 kb on - strand, within BACOVA_03563 at 344.217 kb on - strand, within BACOVA_03563 at 344.221 kb on + strand, within BACOVA_03563 at 344.266 kb on + strand, within BACOVA_03563 at 344.267 kb on - strand, within BACOVA_03563 at 344.271 kb on + strand, within BACOVA_03563 at 344.272 kb on - strand, within BACOVA_03563 at 344.276 kb on + strand, within BACOVA_03563 at 344.276 kb on + strand, within BACOVA_03563 at 344.277 kb on - strand, within BACOVA_03563 at 344.277 kb on - strand, within BACOVA_03563 at 344.292 kb on + strand, within BACOVA_03563 at 344.359 kb on - strand, within BACOVA_03563 at 344.376 kb on - strand, within BACOVA_03563 at 344.396 kb on + strand, within BACOVA_03563 at 344.396 kb on + strand, within BACOVA_03563 at 344.526 kb on - strand, within BACOVA_03563 at 344.526 kb on - strand, within BACOVA_03563 at 344.543 kb on + strand, within BACOVA_03563 at 344.544 kb on - strand, within BACOVA_03563 at 344.662 kb on - strand, within BACOVA_03563 at 344.664 kb on + strand, within BACOVA_03563 at 344.664 kb on + strand, within BACOVA_03563 at 344.665 kb on - strand, within BACOVA_03563 at 344.665 kb on - strand, within BACOVA_03563 at 344.677 kb on + strand, within BACOVA_03563 at 344.677 kb on + strand, within BACOVA_03563 at 344.684 kb on + strand at 344.684 kb on + strand at 344.706 kb on + strand at 344.760 kb on + strand at 344.761 kb on - strand at 344.799 kb on + strand at 344.800 kb on - strand at 344.802 kb on + strand at 344.803 kb on - strand at 344.804 kb on + strand at 344.819 kb on + strand at 344.848 kb on - strand at 344.848 kb on - strand at 344.848 kb on - strand at 344.853 kb on - strand at 344.853 kb on - strand at 344.853 kb on - strand at 344.863 kb on + strand at 344.865 kb on + strand at 344.865 kb on + strand at 344.866 kb on - strand at 344.882 kb on + strand, within BACOVA_03564 at 344.897 kb on + strand, within BACOVA_03564 at 344.902 kb on + strand, within BACOVA_03564 at 344.949 kb on - strand, within BACOVA_03564 at 344.971 kb on - strand, within BACOVA_03564 at 345.040 kb on + strand, within BACOVA_03564 at 345.056 kb on - strand, within BACOVA_03564 at 345.079 kb on + strand, within BACOVA_03564 at 345.082 kb on - strand, within BACOVA_03564 at 345.085 kb on + strand, within BACOVA_03564 at 345.085 kb on + strand, within BACOVA_03564 at 345.085 kb on + strand, within BACOVA_03564 at 345.105 kb on + strand, within BACOVA_03564 at 345.106 kb on - strand, within BACOVA_03564 at 345.193 kb on - strand, within BACOVA_03564 at 345.199 kb on + strand, within BACOVA_03564 at 345.277 kb on + strand, within BACOVA_03564 at 345.313 kb on + strand at 345.316 kb on - strand at 345.334 kb on + strand at 345.334 kb on + strand at 345.334 kb on + strand at 345.353 kb on + strand at 345.354 kb on - strand at 345.354 kb on - strand at 345.439 kb on - strand at 345.446 kb on + strand at 345.447 kb on - strand at 345.490 kb on + strand at 345.491 kb on - strand at 345.491 kb on - strand at 345.494 kb on + strand at 345.495 kb on - strand at 345.495 kb on - strand at 345.495 kb on - strand at 345.499 kb on + strand at 345.518 kb on - strand at 345.618 kb on - strand at 345.618 kb on - strand at 345.693 kb on - strand at 345.714 kb on - strand at 345.714 kb on - strand at 345.725 kb on - strand at 345.755 kb on + strand at 345.781 kb on + strand at 345.806 kb on - strand, within BACOVA_03565
Per-strain Table
Position Strand Gene LocusTag Fraction BHI 1 x (C) complex media remove 342,482 + BACOVA_03562 0.79 -1.3 342,485 - BACOVA_03562 0.79 -0.7 342,485 - BACOVA_03562 0.79 -0.8 342,532 + BACOVA_03562 0.80 -0.8 342,533 - BACOVA_03562 0.80 +0.5 342,533 - BACOVA_03562 0.80 +0.8 342,562 - BACOVA_03562 0.81 +0.5 342,580 + BACOVA_03562 0.81 -1.9 342,693 + BACOVA_03562 0.84 -0.2 342,697 + BACOVA_03562 0.84 +0.5 342,697 + BACOVA_03562 0.84 +0.1 342,698 - BACOVA_03562 0.84 +0.3 342,698 - BACOVA_03562 0.84 -0.5 342,698 - BACOVA_03562 0.84 -0.3 342,794 - BACOVA_03562 0.87 +0.0 342,803 - BACOVA_03562 0.87 -1.9 342,803 - BACOVA_03562 0.87 +1.2 342,820 + BACOVA_03562 0.87 +0.0 342,848 + BACOVA_03562 0.88 +0.3 342,850 + BACOVA_03562 0.88 +0.6 342,869 + BACOVA_03562 0.88 -0.8 342,869 + BACOVA_03562 0.88 -0.7 342,869 + BACOVA_03562 0.88 +0.7 342,869 + BACOVA_03562 0.88 -1.2 342,870 - BACOVA_03562 0.88 -0.7 342,870 - BACOVA_03562 0.88 -0.4 342,873 + BACOVA_03562 0.89 +0.7 342,874 - BACOVA_03562 0.89 -0.8 342,890 + BACOVA_03562 0.89 -0.9 342,891 - BACOVA_03562 0.89 +0.6 342,897 + BACOVA_03562 0.89 -0.9 342,897 + BACOVA_03562 0.89 -0.8 342,917 - BACOVA_03562 0.90 +0.9 342,986 - -0.2 342,991 + -0.8 342,991 + -0.4 342,991 + +0.2 342,992 - +0.4 342,995 - +0.4 343,002 + -1.2 343,003 - -0.3 343,075 + -0.0 343,076 - +0.6 343,113 + -0.0 343,136 - -0.4 343,136 - +0.5 343,159 + -0.6 343,211 + +0.5 343,211 + -0.1 343,213 + +0.3 343,217 - -1.0 343,259 + -0.9 343,271 + +0.3 343,334 - -0.2 343,338 - -0.7 343,360 + +0.8 343,360 + +0.5 343,361 - -0.9 343,361 - +0.0 343,389 + +0.1 343,390 - -0.9 343,391 - -0.2 343,407 + -1.6 343,410 + +0.5 343,410 + -0.6 343,424 + -2.0 343,424 + +0.4 343,520 + -0.0 343,541 - -0.4 343,541 - +0.5 343,546 + +0.7 343,608 - BACOVA_03563 0.13 +0.1 343,623 + BACOVA_03563 0.14 +0.2 343,623 + BACOVA_03563 0.14 +0.1 343,624 - BACOVA_03563 0.14 -0.9 343,624 - BACOVA_03563 0.14 -0.3 343,624 - BACOVA_03563 0.14 +0.1 343,626 - BACOVA_03563 0.14 -1.0 343,639 + BACOVA_03563 0.15 -1.5 343,640 - BACOVA_03563 0.15 +1.4 343,667 - BACOVA_03563 0.17 +0.3 343,671 - BACOVA_03563 0.17 -0.7 343,744 + BACOVA_03563 0.23 +0.2 343,745 - BACOVA_03563 0.23 -0.5 343,820 - BACOVA_03563 0.28 +0.1 343,820 - BACOVA_03563 0.28 +0.8 343,839 - BACOVA_03563 0.29 -1.2 343,839 - BACOVA_03563 0.29 +0.9 343,840 + BACOVA_03563 0.30 +1.6 343,862 - BACOVA_03563 0.31 -0.7 343,961 - BACOVA_03563 0.38 +0.5 343,975 + BACOVA_03563 0.39 +0.3 343,984 + BACOVA_03563 0.40 -0.6 344,004 + BACOVA_03563 0.41 +1.1 344,005 - BACOVA_03563 0.41 -0.9 344,073 + BACOVA_03563 0.46 +0.2 344,073 + BACOVA_03563 0.46 -0.1 344,074 - BACOVA_03563 0.46 -0.7 344,074 - BACOVA_03563 0.46 +0.4 344,082 + BACOVA_03563 0.47 -1.4 344,082 + BACOVA_03563 0.47 +0.7 344,083 - BACOVA_03563 0.47 -0.3 344,084 + BACOVA_03563 0.47 +0.4 344,084 + BACOVA_03563 0.47 +0.1 344,084 + BACOVA_03563 0.47 +0.3 344,085 - BACOVA_03563 0.47 -1.1 344,085 - BACOVA_03563 0.47 +0.5 344,085 - BACOVA_03563 0.47 +0.2 344,085 - BACOVA_03563 0.47 +0.8 344,085 - BACOVA_03563 0.47 +0.5 344,105 + BACOVA_03563 0.49 +0.2 344,110 - BACOVA_03563 0.49 -0.2 344,110 - BACOVA_03563 0.49 -1.1 344,144 + BACOVA_03563 0.51 -2.0 344,153 + BACOVA_03563 0.52 +0.3 344,185 - BACOVA_03563 0.54 +0.5 344,200 - BACOVA_03563 0.55 +0.2 344,217 - BACOVA_03563 0.57 -0.7 344,221 + BACOVA_03563 0.57 -0.5 344,266 + BACOVA_03563 0.60 -0.3 344,267 - BACOVA_03563 0.60 -2.0 344,271 + BACOVA_03563 0.61 -0.2 344,272 - BACOVA_03563 0.61 +0.3 344,276 + BACOVA_03563 0.61 -0.5 344,276 + BACOVA_03563 0.61 +1.8 344,277 - BACOVA_03563 0.61 +0.2 344,277 - BACOVA_03563 0.61 +0.7 344,292 + BACOVA_03563 0.62 -0.3 344,359 - BACOVA_03563 0.67 -0.5 344,376 - BACOVA_03563 0.68 +0.5 344,396 + BACOVA_03563 0.70 +0.7 344,396 + BACOVA_03563 0.70 +0.6 344,526 - BACOVA_03563 0.79 -0.0 344,526 - BACOVA_03563 0.79 -0.2 344,543 + BACOVA_03563 0.80 +0.8 344,544 - BACOVA_03563 0.80 +0.0 344,662 - BACOVA_03563 0.89 +0.7 344,664 + BACOVA_03563 0.89 -1.2 344,664 + BACOVA_03563 0.89 +0.3 344,665 - BACOVA_03563 0.89 -0.0 344,665 - BACOVA_03563 0.89 -0.0 344,677 + BACOVA_03563 0.90 -0.9 344,677 + BACOVA_03563 0.90 +0.1 344,684 + -1.1 344,684 + -1.8 344,706 + +0.5 344,760 + +0.4 344,761 - +0.4 344,799 + +0.4 344,800 - -1.3 344,802 + +0.5 344,803 - +0.4 344,804 + +0.1 344,819 + +0.5 344,848 - +1.3 344,848 - -0.1 344,848 - -1.0 344,853 - +0.7 344,853 - +0.3 344,853 - -1.2 344,863 + -0.5 344,865 + +1.2 344,865 + -1.0 344,866 - -0.1 344,882 + BACOVA_03564 0.11 +0.1 344,897 + BACOVA_03564 0.14 -1.4 344,902 + BACOVA_03564 0.15 +0.5 344,949 - BACOVA_03564 0.25 +0.3 344,971 - BACOVA_03564 0.29 -1.2 345,040 + BACOVA_03564 0.42 -0.0 345,056 - BACOVA_03564 0.45 -1.7 345,079 + BACOVA_03564 0.50 +2.2 345,082 - BACOVA_03564 0.51 -0.7 345,085 + BACOVA_03564 0.51 -0.8 345,085 + BACOVA_03564 0.51 +0.4 345,085 + BACOVA_03564 0.51 -0.3 345,105 + BACOVA_03564 0.55 -0.2 345,106 - BACOVA_03564 0.55 -0.8 345,193 - BACOVA_03564 0.72 +0.1 345,199 + BACOVA_03564 0.74 -0.5 345,277 + BACOVA_03564 0.89 -0.9 345,313 + +1.5 345,316 - -0.3 345,334 + +0.4 345,334 + -0.5 345,334 + -0.5 345,353 + -0.7 345,354 - -0.2 345,354 - +0.2 345,439 - -0.3 345,446 + -0.6 345,447 - +0.1 345,490 + -1.0 345,491 - +0.5 345,491 - -1.5 345,494 + +0.1 345,495 - -0.8 345,495 - +0.2 345,495 - +0.1 345,499 + +0.7 345,518 - -0.7 345,618 - +0.2 345,618 - -0.0 345,693 - +0.1 345,714 - -0.2 345,714 - +0.2 345,725 - -0.8 345,755 + -0.8 345,781 + +0.3 345,806 - BACOVA_03565 0.10 +0.8
Or see this region's nucleotide sequence