Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02017

Experiment: BHI 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02016 and BACOVA_02017 are separated by 22 nucleotidesBACOVA_02017 and BACOVA_02018 are separated by 121 nucleotidesBACOVA_02018 and BACOVA_02019 are separated by 87 nucleotides BACOVA_02016: BACOVA_02016 - auxiliary transport protein, membrane fusion protein (MFP) family protein, at 319,515 to 320,606 _02016 BACOVA_02017: BACOVA_02017 - outer membrane efflux protein, at 320,629 to 321,960 _02017 BACOVA_02018: BACOVA_02018 - hypothetical protein, at 322,082 to 322,264 _02018 BACOVA_02019: BACOVA_02019 - hypothetical protein, at 322,352 to 322,948 _02019 Position (kb) 320 321 322Strain fitness (log2 ratio) -2 -1 0 1 2at 319.663 kb on + strand, within BACOVA_02016at 319.688 kb on + strand, within BACOVA_02016at 319.689 kb on - strand, within BACOVA_02016at 319.743 kb on + strand, within BACOVA_02016at 319.743 kb on + strand, within BACOVA_02016at 319.744 kb on - strand, within BACOVA_02016at 319.744 kb on - strand, within BACOVA_02016at 319.744 kb on - strand, within BACOVA_02016at 319.784 kb on + strand, within BACOVA_02016at 319.786 kb on + strand, within BACOVA_02016at 319.786 kb on + strand, within BACOVA_02016at 319.826 kb on - strand, within BACOVA_02016at 319.902 kb on + strand, within BACOVA_02016at 319.905 kb on + strand, within BACOVA_02016at 319.905 kb on + strand, within BACOVA_02016at 319.906 kb on - strand, within BACOVA_02016at 319.914 kb on - strand, within BACOVA_02016at 319.977 kb on - strand, within BACOVA_02016at 320.004 kb on + strand, within BACOVA_02016at 320.004 kb on + strand, within BACOVA_02016at 320.040 kb on - strand, within BACOVA_02016at 320.060 kb on + strand, within BACOVA_02016at 320.166 kb on + strand, within BACOVA_02016at 320.228 kb on + strand, within BACOVA_02016at 320.228 kb on + strand, within BACOVA_02016at 320.229 kb on - strand, within BACOVA_02016at 320.229 kb on - strand, within BACOVA_02016at 320.297 kb on + strand, within BACOVA_02016at 320.297 kb on + strand, within BACOVA_02016at 320.297 kb on + strand, within BACOVA_02016at 320.336 kb on + strand, within BACOVA_02016at 320.337 kb on - strand, within BACOVA_02016at 320.337 kb on - strand, within BACOVA_02016at 320.337 kb on - strand, within BACOVA_02016at 320.337 kb on - strand, within BACOVA_02016at 320.363 kb on - strand, within BACOVA_02016at 320.377 kb on + strand, within BACOVA_02016at 320.378 kb on - strand, within BACOVA_02016at 320.391 kb on + strand, within BACOVA_02016at 320.400 kb on - strand, within BACOVA_02016at 320.410 kb on + strand, within BACOVA_02016at 320.410 kb on + strand, within BACOVA_02016at 320.411 kb on - strand, within BACOVA_02016at 320.419 kb on - strand, within BACOVA_02016at 320.435 kb on + strand, within BACOVA_02016at 320.499 kb on - strandat 320.520 kb on - strandat 320.574 kb on - strandat 320.574 kb on - strandat 320.610 kb on + strandat 320.610 kb on + strandat 320.610 kb on + strandat 320.611 kb on - strandat 320.611 kb on - strandat 320.611 kb on - strandat 320.619 kb on + strandat 320.631 kb on - strandat 320.648 kb on - strandat 320.694 kb on + strandat 320.694 kb on + strandat 320.694 kb on + strandat 320.695 kb on - strandat 320.696 kb on + strandat 320.697 kb on - strandat 320.697 kb on - strandat 320.697 kb on - strandat 320.697 kb on - strandat 320.697 kb on - strandat 320.711 kb on + strandat 320.712 kb on - strandat 320.763 kb on + strand, within BACOVA_02017at 320.764 kb on - strand, within BACOVA_02017at 320.825 kb on + strand, within BACOVA_02017at 320.825 kb on + strand, within BACOVA_02017at 320.889 kb on - strand, within BACOVA_02017at 320.941 kb on + strand, within BACOVA_02017at 320.976 kb on + strand, within BACOVA_02017at 321.000 kb on + strand, within BACOVA_02017at 321.001 kb on - strand, within BACOVA_02017at 321.081 kb on + strand, within BACOVA_02017at 321.081 kb on + strand, within BACOVA_02017at 321.081 kb on + strand, within BACOVA_02017at 321.082 kb on - strand, within BACOVA_02017at 321.084 kb on - strand, within BACOVA_02017at 321.127 kb on - strand, within BACOVA_02017at 321.136 kb on - strand, within BACOVA_02017at 321.136 kb on - strand, within BACOVA_02017at 321.138 kb on + strand, within BACOVA_02017at 321.139 kb on - strand, within BACOVA_02017at 321.197 kb on + strand, within BACOVA_02017at 321.234 kb on + strand, within BACOVA_02017at 321.234 kb on + strand, within BACOVA_02017at 321.296 kb on + strand, within BACOVA_02017at 321.296 kb on + strand, within BACOVA_02017at 321.306 kb on + strand, within BACOVA_02017at 321.307 kb on - strand, within BACOVA_02017at 321.344 kb on + strand, within BACOVA_02017at 321.373 kb on - strand, within BACOVA_02017at 321.399 kb on + strand, within BACOVA_02017at 321.429 kb on + strand, within BACOVA_02017at 321.432 kb on + strand, within BACOVA_02017at 321.432 kb on + strand, within BACOVA_02017at 321.459 kb on + strand, within BACOVA_02017at 321.459 kb on + strand, within BACOVA_02017at 321.460 kb on - strand, within BACOVA_02017at 321.509 kb on + strand, within BACOVA_02017at 321.510 kb on - strand, within BACOVA_02017at 321.531 kb on + strand, within BACOVA_02017at 321.531 kb on + strand, within BACOVA_02017at 321.586 kb on - strand, within BACOVA_02017at 321.597 kb on + strand, within BACOVA_02017at 321.598 kb on - strand, within BACOVA_02017at 321.598 kb on - strand, within BACOVA_02017at 321.603 kb on + strand, within BACOVA_02017at 321.604 kb on - strand, within BACOVA_02017at 321.678 kb on + strand, within BACOVA_02017at 321.679 kb on - strand, within BACOVA_02017at 321.681 kb on + strand, within BACOVA_02017at 321.682 kb on - strand, within BACOVA_02017at 321.682 kb on - strand, within BACOVA_02017at 321.683 kb on + strand, within BACOVA_02017at 321.683 kb on + strand, within BACOVA_02017at 321.683 kb on + strand, within BACOVA_02017at 321.683 kb on + strand, within BACOVA_02017at 321.683 kb on + strand, within BACOVA_02017at 321.695 kb on + strand, within BACOVA_02017at 321.738 kb on + strand, within BACOVA_02017at 321.742 kb on - strand, within BACOVA_02017at 321.742 kb on - strand, within BACOVA_02017at 321.793 kb on + strand, within BACOVA_02017at 321.800 kb on + strand, within BACOVA_02017at 321.800 kb on + strand, within BACOVA_02017at 321.800 kb on + strand, within BACOVA_02017at 321.847 kb on - strandat 321.893 kb on - strandat 321.920 kb on - strandat 321.964 kb on - strandat 321.965 kb on + strandat 321.965 kb on + strandat 321.965 kb on + strandat 321.966 kb on - strandat 321.966 kb on - strandat 321.966 kb on - strandat 321.975 kb on + strandat 322.005 kb on + strandat 322.005 kb on + strandat 322.005 kb on + strandat 322.005 kb on + strandat 322.005 kb on + strandat 322.005 kb on + strandat 322.006 kb on - strandat 322.035 kb on + strandat 322.090 kb on - strandat 322.115 kb on - strand, within BACOVA_02018at 322.121 kb on + strand, within BACOVA_02018at 322.121 kb on + strand, within BACOVA_02018at 322.122 kb on - strand, within BACOVA_02018at 322.162 kb on - strand, within BACOVA_02018at 322.215 kb on + strand, within BACOVA_02018at 322.216 kb on - strand, within BACOVA_02018at 322.216 kb on - strand, within BACOVA_02018at 322.304 kb on + strandat 322.304 kb on + strandat 322.305 kb on - strandat 322.308 kb on + strandat 322.309 kb on - strandat 322.309 kb on - strandat 322.309 kb on - strandat 322.312 kb on + strandat 322.312 kb on + strandat 322.312 kb on + strandat 322.336 kb on - strandat 322.375 kb on - strandat 322.392 kb on + strandat 322.392 kb on + strandat 322.412 kb on - strand, within BACOVA_02019at 322.430 kb on + strand, within BACOVA_02019at 322.431 kb on - strand, within BACOVA_02019at 322.525 kb on + strand, within BACOVA_02019at 322.553 kb on + strand, within BACOVA_02019at 322.553 kb on + strand, within BACOVA_02019at 322.554 kb on - strand, within BACOVA_02019at 322.555 kb on + strand, within BACOVA_02019at 322.556 kb on - strand, within BACOVA_02019at 322.568 kb on - strand, within BACOVA_02019at 322.568 kb on - strand, within BACOVA_02019at 322.607 kb on - strand, within BACOVA_02019at 322.757 kb on - strand, within BACOVA_02019at 322.871 kb on - strand, within BACOVA_02019at 322.903 kb on + strandat 322.960 kb on + strandat 322.960 kb on + strandat 322.960 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHI 1 x (C) complex media
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319,663 + BACOVA_02016 0.14 +0.4
319,688 + BACOVA_02016 0.16 +0.8
319,689 - BACOVA_02016 0.16 +0.2
319,743 + BACOVA_02016 0.21 -1.0
319,743 + BACOVA_02016 0.21 +0.6
319,744 - BACOVA_02016 0.21 +0.6
319,744 - BACOVA_02016 0.21 +0.1
319,744 - BACOVA_02016 0.21 -0.4
319,784 + BACOVA_02016 0.25 +0.8
319,786 + BACOVA_02016 0.25 +0.7
319,786 + BACOVA_02016 0.25 +0.6
319,826 - BACOVA_02016 0.28 -0.6
319,902 + BACOVA_02016 0.35 +0.6
319,905 + BACOVA_02016 0.36 +0.2
319,905 + BACOVA_02016 0.36 -0.5
319,906 - BACOVA_02016 0.36 +1.5
319,914 - BACOVA_02016 0.37 -1.0
319,977 - BACOVA_02016 0.42 -0.6
320,004 + BACOVA_02016 0.45 +0.8
320,004 + BACOVA_02016 0.45 +0.0
320,040 - BACOVA_02016 0.48 -0.3
320,060 + BACOVA_02016 0.50 -0.7
320,166 + BACOVA_02016 0.60 +0.9
320,228 + BACOVA_02016 0.65 -0.4
320,228 + BACOVA_02016 0.65 -0.2
320,229 - BACOVA_02016 0.65 -0.2
320,229 - BACOVA_02016 0.65 +0.4
320,297 + BACOVA_02016 0.72 -0.2
320,297 + BACOVA_02016 0.72 +1.4
320,297 + BACOVA_02016 0.72 +0.3
320,336 + BACOVA_02016 0.75 +0.9
320,337 - BACOVA_02016 0.75 +1.2
320,337 - BACOVA_02016 0.75 -2.7
320,337 - BACOVA_02016 0.75 +0.1
320,337 - BACOVA_02016 0.75 -0.6
320,363 - BACOVA_02016 0.78 +0.6
320,377 + BACOVA_02016 0.79 +0.0
320,378 - BACOVA_02016 0.79 +0.0
320,391 + BACOVA_02016 0.80 -2.7
320,400 - BACOVA_02016 0.81 +0.2
320,410 + BACOVA_02016 0.82 +0.3
320,410 + BACOVA_02016 0.82 +0.1
320,411 - BACOVA_02016 0.82 -1.2
320,419 - BACOVA_02016 0.83 +0.2
320,435 + BACOVA_02016 0.84 +1.5
320,499 - -0.2
320,520 - -0.1
320,574 - +0.2
320,574 - +1.8
320,610 + +0.3
320,610 + +0.5
320,610 + -0.0
320,611 - -1.0
320,611 - +0.2
320,611 - -0.6
320,619 + -0.7
320,631 - -0.0
320,648 - +1.1
320,694 + +0.6
320,694 + +0.2
320,694 + -0.0
320,695 - -0.9
320,696 + -0.7
320,697 - -0.8
320,697 - -0.5
320,697 - +0.7
320,697 - -0.7
320,697 - -1.2
320,711 + -2.0
320,712 - +0.1
320,763 + BACOVA_02017 0.10 -0.5
320,764 - BACOVA_02017 0.10 -0.2
320,825 + BACOVA_02017 0.15 +0.4
320,825 + BACOVA_02017 0.15 -0.6
320,889 - BACOVA_02017 0.20 +0.3
320,941 + BACOVA_02017 0.23 +0.3
320,976 + BACOVA_02017 0.26 +0.3
321,000 + BACOVA_02017 0.28 -0.1
321,001 - BACOVA_02017 0.28 +0.2
321,081 + BACOVA_02017 0.34 -0.7
321,081 + BACOVA_02017 0.34 +0.3
321,081 + BACOVA_02017 0.34 -0.1
321,082 - BACOVA_02017 0.34 -0.3
321,084 - BACOVA_02017 0.34 -0.3
321,127 - BACOVA_02017 0.37 +0.8
321,136 - BACOVA_02017 0.38 +1.0
321,136 - BACOVA_02017 0.38 -1.6
321,138 + BACOVA_02017 0.38 -0.3
321,139 - BACOVA_02017 0.38 -0.2
321,197 + BACOVA_02017 0.43 +1.0
321,234 + BACOVA_02017 0.45 +0.6
321,234 + BACOVA_02017 0.45 -1.0
321,296 + BACOVA_02017 0.50 -1.3
321,296 + BACOVA_02017 0.50 +1.1
321,306 + BACOVA_02017 0.51 -0.8
321,307 - BACOVA_02017 0.51 +0.5
321,344 + BACOVA_02017 0.54 -1.3
321,373 - BACOVA_02017 0.56 +0.7
321,399 + BACOVA_02017 0.58 +0.9
321,429 + BACOVA_02017 0.60 -0.4
321,432 + BACOVA_02017 0.60 +0.3
321,432 + BACOVA_02017 0.60 -0.4
321,459 + BACOVA_02017 0.62 +0.4
321,459 + BACOVA_02017 0.62 -0.1
321,460 - BACOVA_02017 0.62 +0.8
321,509 + BACOVA_02017 0.66 +0.0
321,510 - BACOVA_02017 0.66 -0.2
321,531 + BACOVA_02017 0.68 +1.4
321,531 + BACOVA_02017 0.68 +0.1
321,586 - BACOVA_02017 0.72 -0.8
321,597 + BACOVA_02017 0.73 -1.7
321,598 - BACOVA_02017 0.73 -0.4
321,598 - BACOVA_02017 0.73 -0.3
321,603 + BACOVA_02017 0.73 -0.5
321,604 - BACOVA_02017 0.73 +0.4
321,678 + BACOVA_02017 0.79 -0.4
321,679 - BACOVA_02017 0.79 +0.2
321,681 + BACOVA_02017 0.79 -0.4
321,682 - BACOVA_02017 0.79 +0.9
321,682 - BACOVA_02017 0.79 -0.2
321,683 + BACOVA_02017 0.79 +0.2
321,683 + BACOVA_02017 0.79 +0.2
321,683 + BACOVA_02017 0.79 +0.2
321,683 + BACOVA_02017 0.79 +0.0
321,683 + BACOVA_02017 0.79 -0.7
321,695 + BACOVA_02017 0.80 -1.0
321,738 + BACOVA_02017 0.83 +0.0
321,742 - BACOVA_02017 0.84 +0.5
321,742 - BACOVA_02017 0.84 +0.3
321,793 + BACOVA_02017 0.87 +0.6
321,800 + BACOVA_02017 0.88 +0.4
321,800 + BACOVA_02017 0.88 -0.1
321,800 + BACOVA_02017 0.88 -0.0
321,847 - -0.1
321,893 - +0.4
321,920 - -0.9
321,964 - -1.2
321,965 + +0.4
321,965 + -0.5
321,965 + -0.2
321,966 - -0.5
321,966 - -0.3
321,966 - +0.2
321,975 + -0.5
322,005 + -0.6
322,005 + -0.1
322,005 + -0.8
322,005 + +0.2
322,005 + -0.7
322,005 + +0.3
322,006 - +0.9
322,035 + +0.2
322,090 - -0.1
322,115 - BACOVA_02018 0.18 +0.8
322,121 + BACOVA_02018 0.21 +0.2
322,121 + BACOVA_02018 0.21 +0.2
322,122 - BACOVA_02018 0.22 +0.4
322,162 - BACOVA_02018 0.44 -0.2
322,215 + BACOVA_02018 0.73 -2.3
322,216 - BACOVA_02018 0.73 +1.4
322,216 - BACOVA_02018 0.73 +1.2
322,304 + -0.3
322,304 + -0.3
322,305 - -0.4
322,308 + -0.2
322,309 - -0.0
322,309 - -0.3
322,309 - +0.3
322,312 + -1.2
322,312 + +0.3
322,312 + -0.8
322,336 - -0.2
322,375 - +0.6
322,392 + +0.9
322,392 + +0.1
322,412 - BACOVA_02019 0.10 -1.5
322,430 + BACOVA_02019 0.13 +0.6
322,431 - BACOVA_02019 0.13 +0.1
322,525 + BACOVA_02019 0.29 -2.1
322,553 + BACOVA_02019 0.34 +0.4
322,553 + BACOVA_02019 0.34 -0.3
322,554 - BACOVA_02019 0.34 -0.5
322,555 + BACOVA_02019 0.34 -0.2
322,556 - BACOVA_02019 0.34 -0.1
322,568 - BACOVA_02019 0.36 +0.4
322,568 - BACOVA_02019 0.36 +1.2
322,607 - BACOVA_02019 0.43 +1.1
322,757 - BACOVA_02019 0.68 +0.9
322,871 - BACOVA_02019 0.87 -0.1
322,903 + -1.3
322,960 + -0.1
322,960 + -0.2
322,960 + +0.4

Or see this region's nucleotide sequence