Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01667

Experiment: BHI 1 x (C) complex media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_01666 and BACOVA_01667 are separated by 20 nucleotidesBACOVA_01667 and BACOVA_01668 are separated by 56 nucleotides BACOVA_01666: BACOVA_01666 - SusD family protein, at 75,828 to 77,309 _01666 BACOVA_01667: BACOVA_01667 - TonB-linked outer membrane protein, SusC/RagA family, at 77,330 to 80,413 _01667 BACOVA_01668: BACOVA_01668 - hypothetical protein, at 80,470 to 81,672 _01668 Position (kb) 77 78 79 80 81Strain fitness (log2 ratio) -2 -1 0 1 2at 76.425 kb on + strand, within BACOVA_01666at 76.497 kb on - strand, within BACOVA_01666at 76.499 kb on - strand, within BACOVA_01666at 76.504 kb on - strand, within BACOVA_01666at 76.515 kb on - strand, within BACOVA_01666at 76.517 kb on + strand, within BACOVA_01666at 76.541 kb on + strand, within BACOVA_01666at 76.558 kb on + strand, within BACOVA_01666at 76.593 kb on + strand, within BACOVA_01666at 76.643 kb on - strand, within BACOVA_01666at 76.675 kb on - strand, within BACOVA_01666at 76.705 kb on + strand, within BACOVA_01666at 76.705 kb on + strand, within BACOVA_01666at 76.705 kb on + strand, within BACOVA_01666at 76.706 kb on - strand, within BACOVA_01666at 76.852 kb on - strand, within BACOVA_01666at 76.967 kb on + strand, within BACOVA_01666at 76.974 kb on - strand, within BACOVA_01666at 76.985 kb on + strand, within BACOVA_01666at 76.985 kb on + strand, within BACOVA_01666at 77.221 kb on + strandat 77.222 kb on - strandat 77.314 kb on - strandat 77.324 kb on - strandat 77.432 kb on - strandat 77.449 kb on + strandat 77.458 kb on - strandat 77.473 kb on + strandat 77.475 kb on + strandat 77.476 kb on - strandat 77.519 kb on - strandat 77.552 kb on - strandat 77.552 kb on - strandat 77.552 kb on - strandat 77.559 kb on - strandat 77.579 kb on + strandat 77.580 kb on - strandat 77.584 kb on - strandat 77.813 kb on - strand, within BACOVA_01667at 77.900 kb on + strand, within BACOVA_01667at 78.109 kb on + strand, within BACOVA_01667at 78.151 kb on + strand, within BACOVA_01667at 78.152 kb on - strand, within BACOVA_01667at 78.214 kb on + strand, within BACOVA_01667at 78.273 kb on + strand, within BACOVA_01667at 78.274 kb on - strand, within BACOVA_01667at 78.276 kb on + strand, within BACOVA_01667at 78.298 kb on + strand, within BACOVA_01667at 78.337 kb on - strand, within BACOVA_01667at 78.337 kb on - strand, within BACOVA_01667at 78.436 kb on - strand, within BACOVA_01667at 78.436 kb on - strand, within BACOVA_01667at 78.459 kb on + strand, within BACOVA_01667at 78.460 kb on - strand, within BACOVA_01667at 78.460 kb on - strand, within BACOVA_01667at 78.463 kb on - strand, within BACOVA_01667at 78.594 kb on + strand, within BACOVA_01667at 78.672 kb on + strand, within BACOVA_01667at 78.673 kb on - strand, within BACOVA_01667at 78.673 kb on - strand, within BACOVA_01667at 78.673 kb on - strand, within BACOVA_01667at 78.679 kb on - strand, within BACOVA_01667at 78.679 kb on - strand, within BACOVA_01667at 78.730 kb on - strand, within BACOVA_01667at 78.730 kb on - strand, within BACOVA_01667at 78.858 kb on + strand, within BACOVA_01667at 78.858 kb on + strand, within BACOVA_01667at 78.909 kb on - strand, within BACOVA_01667at 78.918 kb on + strand, within BACOVA_01667at 78.918 kb on + strand, within BACOVA_01667at 78.919 kb on - strand, within BACOVA_01667at 78.919 kb on - strand, within BACOVA_01667at 78.932 kb on - strand, within BACOVA_01667at 78.932 kb on - strand, within BACOVA_01667at 78.934 kb on - strand, within BACOVA_01667at 78.944 kb on - strand, within BACOVA_01667at 78.999 kb on + strand, within BACOVA_01667at 79.032 kb on - strand, within BACOVA_01667at 79.192 kb on - strand, within BACOVA_01667at 79.192 kb on - strand, within BACOVA_01667at 79.192 kb on - strand, within BACOVA_01667at 79.196 kb on - strand, within BACOVA_01667at 79.275 kb on - strand, within BACOVA_01667at 79.300 kb on - strand, within BACOVA_01667at 79.370 kb on + strand, within BACOVA_01667at 79.422 kb on + strand, within BACOVA_01667at 79.423 kb on - strand, within BACOVA_01667at 79.423 kb on - strand, within BACOVA_01667at 79.472 kb on - strand, within BACOVA_01667at 79.473 kb on + strand, within BACOVA_01667at 79.570 kb on + strand, within BACOVA_01667at 79.677 kb on - strand, within BACOVA_01667at 79.750 kb on + strand, within BACOVA_01667at 79.751 kb on - strand, within BACOVA_01667at 79.788 kb on + strand, within BACOVA_01667at 79.788 kb on + strand, within BACOVA_01667at 79.789 kb on - strand, within BACOVA_01667at 79.835 kb on - strand, within BACOVA_01667at 79.916 kb on - strand, within BACOVA_01667at 79.967 kb on - strand, within BACOVA_01667at 79.976 kb on + strand, within BACOVA_01667at 80.032 kb on + strand, within BACOVA_01667at 80.032 kb on + strand, within BACOVA_01667at 80.033 kb on - strand, within BACOVA_01667at 80.105 kb on + strandat 80.105 kb on + strandat 80.106 kb on - strandat 80.106 kb on - strandat 80.124 kb on - strandat 80.124 kb on - strandat 80.124 kb on - strandat 80.205 kb on + strandat 80.206 kb on - strandat 80.276 kb on - strandat 80.294 kb on + strandat 80.295 kb on - strandat 80.353 kb on + strandat 80.367 kb on + strandat 80.397 kb on - strandat 80.397 kb on - strandat 80.460 kb on + strandat 80.461 kb on - strandat 80.461 kb on - strandat 80.488 kb on + strandat 80.488 kb on + strandat 80.489 kb on - strandat 80.660 kb on + strand, within BACOVA_01668at 80.725 kb on - strand, within BACOVA_01668at 80.725 kb on - strand, within BACOVA_01668at 80.757 kb on + strand, within BACOVA_01668at 80.788 kb on - strand, within BACOVA_01668at 80.802 kb on + strand, within BACOVA_01668at 80.842 kb on + strand, within BACOVA_01668at 80.842 kb on + strand, within BACOVA_01668at 80.910 kb on + strand, within BACOVA_01668at 80.911 kb on - strand, within BACOVA_01668at 80.915 kb on - strand, within BACOVA_01668at 80.915 kb on - strand, within BACOVA_01668at 80.921 kb on + strand, within BACOVA_01668at 80.922 kb on - strand, within BACOVA_01668at 80.922 kb on - strand, within BACOVA_01668at 80.986 kb on + strand, within BACOVA_01668at 81.046 kb on + strand, within BACOVA_01668at 81.046 kb on + strand, within BACOVA_01668at 81.047 kb on - strand, within BACOVA_01668at 81.057 kb on + strand, within BACOVA_01668at 81.058 kb on - strand, within BACOVA_01668at 81.079 kb on + strand, within BACOVA_01668at 81.113 kb on + strand, within BACOVA_01668at 81.273 kb on - strand, within BACOVA_01668at 81.273 kb on - strand, within BACOVA_01668at 81.276 kb on - strand, within BACOVA_01668at 81.309 kb on + strand, within BACOVA_01668at 81.310 kb on - strand, within BACOVA_01668at 81.310 kb on - strand, within BACOVA_01668at 81.337 kb on - strand, within BACOVA_01668

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction BHI 1 x (C) complex media
remove
76,425 + BACOVA_01666 0.40 -0.7
76,497 - BACOVA_01666 0.45 -0.9
76,499 - BACOVA_01666 0.45 -0.9
76,504 - BACOVA_01666 0.46 -1.3
76,515 - BACOVA_01666 0.46 -0.7
76,517 + BACOVA_01666 0.46 -0.5
76,541 + BACOVA_01666 0.48 +0.5
76,558 + BACOVA_01666 0.49 -2.4
76,593 + BACOVA_01666 0.52 +1.1
76,643 - BACOVA_01666 0.55 -1.4
76,675 - BACOVA_01666 0.57 -2.3
76,705 + BACOVA_01666 0.59 -0.9
76,705 + BACOVA_01666 0.59 +0.2
76,705 + BACOVA_01666 0.59 +0.6
76,706 - BACOVA_01666 0.59 +1.0
76,852 - BACOVA_01666 0.69 -1.6
76,967 + BACOVA_01666 0.77 -1.3
76,974 - BACOVA_01666 0.77 -0.4
76,985 + BACOVA_01666 0.78 -1.1
76,985 + BACOVA_01666 0.78 -1.1
77,221 + +0.2
77,222 - -0.2
77,314 - -0.1
77,324 - +0.4
77,432 - -0.9
77,449 + -1.4
77,458 - +0.8
77,473 + -0.2
77,475 + -0.4
77,476 - -1.5
77,519 - +0.6
77,552 - -0.6
77,552 - -0.6
77,552 - +0.4
77,559 - -0.4
77,579 + -0.6
77,580 - -0.1
77,584 - +0.3
77,813 - BACOVA_01667 0.16 -1.2
77,900 + BACOVA_01667 0.18 -0.1
78,109 + BACOVA_01667 0.25 +1.1
78,151 + BACOVA_01667 0.27 +0.2
78,152 - BACOVA_01667 0.27 +0.3
78,214 + BACOVA_01667 0.29 +0.5
78,273 + BACOVA_01667 0.31 -1.1
78,274 - BACOVA_01667 0.31 -0.8
78,276 + BACOVA_01667 0.31 +0.1
78,298 + BACOVA_01667 0.31 -0.8
78,337 - BACOVA_01667 0.33 -0.2
78,337 - BACOVA_01667 0.33 -0.9
78,436 - BACOVA_01667 0.36 -1.4
78,436 - BACOVA_01667 0.36 -0.5
78,459 + BACOVA_01667 0.37 -2.4
78,460 - BACOVA_01667 0.37 +0.9
78,460 - BACOVA_01667 0.37 -0.2
78,463 - BACOVA_01667 0.37 -0.2
78,594 + BACOVA_01667 0.41 +0.2
78,672 + BACOVA_01667 0.44 +0.3
78,673 - BACOVA_01667 0.44 +0.1
78,673 - BACOVA_01667 0.44 -0.5
78,673 - BACOVA_01667 0.44 +1.9
78,679 - BACOVA_01667 0.44 +0.5
78,679 - BACOVA_01667 0.44 +0.6
78,730 - BACOVA_01667 0.45 +0.3
78,730 - BACOVA_01667 0.45 +0.3
78,858 + BACOVA_01667 0.50 +0.5
78,858 + BACOVA_01667 0.50 +0.6
78,909 - BACOVA_01667 0.51 -0.3
78,918 + BACOVA_01667 0.51 -1.3
78,918 + BACOVA_01667 0.51 +0.4
78,919 - BACOVA_01667 0.52 -1.3
78,919 - BACOVA_01667 0.52 -0.8
78,932 - BACOVA_01667 0.52 -0.2
78,932 - BACOVA_01667 0.52 -0.6
78,934 - BACOVA_01667 0.52 +0.8
78,944 - BACOVA_01667 0.52 +0.3
78,999 + BACOVA_01667 0.54 +0.8
79,032 - BACOVA_01667 0.55 +0.6
79,192 - BACOVA_01667 0.60 -0.9
79,192 - BACOVA_01667 0.60 -0.3
79,192 - BACOVA_01667 0.60 +0.0
79,196 - BACOVA_01667 0.61 -0.1
79,275 - BACOVA_01667 0.63 -1.5
79,300 - BACOVA_01667 0.64 +2.2
79,370 + BACOVA_01667 0.66 +0.1
79,422 + BACOVA_01667 0.68 -1.2
79,423 - BACOVA_01667 0.68 -0.5
79,423 - BACOVA_01667 0.68 +0.5
79,472 - BACOVA_01667 0.69 +1.2
79,473 + BACOVA_01667 0.69 +0.6
79,570 + BACOVA_01667 0.73 +0.6
79,677 - BACOVA_01667 0.76 +0.2
79,750 + BACOVA_01667 0.78 +0.6
79,751 - BACOVA_01667 0.79 +0.6
79,788 + BACOVA_01667 0.80 -0.4
79,788 + BACOVA_01667 0.80 -1.2
79,789 - BACOVA_01667 0.80 +0.8
79,835 - BACOVA_01667 0.81 -1.3
79,916 - BACOVA_01667 0.84 -0.2
79,967 - BACOVA_01667 0.86 -0.6
79,976 + BACOVA_01667 0.86 +0.6
80,032 + BACOVA_01667 0.88 -0.1
80,032 + BACOVA_01667 0.88 +0.6
80,033 - BACOVA_01667 0.88 -2.6
80,105 + -0.5
80,105 + +1.3
80,106 - +0.8
80,106 - +0.9
80,124 - +0.6
80,124 - +0.3
80,124 - -0.4
80,205 + +0.3
80,206 - -0.3
80,276 - -0.6
80,294 + -0.5
80,295 - -0.7
80,353 + +0.2
80,367 + +0.3
80,397 - +0.3
80,397 - -1.1
80,460 + -0.3
80,461 - +0.4
80,461 - -0.6
80,488 + +0.3
80,488 + +0.6
80,489 - -0.5
80,660 + BACOVA_01668 0.16 +1.0
80,725 - BACOVA_01668 0.21 +0.2
80,725 - BACOVA_01668 0.21 -0.9
80,757 + BACOVA_01668 0.24 +1.0
80,788 - BACOVA_01668 0.26 +0.7
80,802 + BACOVA_01668 0.28 -0.9
80,842 + BACOVA_01668 0.31 -0.3
80,842 + BACOVA_01668 0.31 -0.1
80,910 + BACOVA_01668 0.37 +0.3
80,911 - BACOVA_01668 0.37 +0.5
80,915 - BACOVA_01668 0.37 +0.4
80,915 - BACOVA_01668 0.37 -1.0
80,921 + BACOVA_01668 0.37 -0.1
80,922 - BACOVA_01668 0.38 -1.1
80,922 - BACOVA_01668 0.38 +0.3
80,986 + BACOVA_01668 0.43 +0.4
81,046 + BACOVA_01668 0.48 -1.4
81,046 + BACOVA_01668 0.48 +0.4
81,047 - BACOVA_01668 0.48 +0.0
81,057 + BACOVA_01668 0.49 -0.9
81,058 - BACOVA_01668 0.49 -0.1
81,079 + BACOVA_01668 0.51 +0.4
81,113 + BACOVA_01668 0.53 -0.3
81,273 - BACOVA_01668 0.67 +0.6
81,273 - BACOVA_01668 0.67 -0.0
81,276 - BACOVA_01668 0.67 +0.2
81,309 + BACOVA_01668 0.70 -1.0
81,310 - BACOVA_01668 0.70 +0.4
81,310 - BACOVA_01668 0.70 -0.2
81,337 - BACOVA_01668 0.72 -0.4

Or see this region's nucleotide sequence