Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01255

Experiment: BHI 1 x (C) complex media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_01253 and BACOVA_01254 are separated by 15 nucleotidesBACOVA_01254 and BACOVA_01255 are separated by 66 nucleotidesBACOVA_01255 and BACOVA_01256 are separated by 75 nucleotides BACOVA_01253: BACOVA_01253 - cytochrome C biogenesis protein transmembrane region, at 38,281 to 40,338 _01253 BACOVA_01254: BACOVA_01254 - stress responsive A/B barrel domain protein, at 40,354 to 40,653 _01254 BACOVA_01255: BACOVA_01255 - uridine kinase, at 40,720 to 41,373 _01255 BACOVA_01256: BACOVA_01256 - transglycosylase SLT domain protein, at 41,449 to 42,789 _01256 Position (kb) 40 41 42Strain fitness (log2 ratio) -3 -2 -1 0 1at 40.365 kb on - strandat 40.510 kb on - strand, within BACOVA_01254at 40.634 kb on - strandat 40.637 kb on - strandat 40.682 kb on - strandat 40.684 kb on - strandat 40.713 kb on - strandat 40.716 kb on - strandat 40.719 kb on - strandat 40.748 kb on - strandat 40.749 kb on + strandat 40.756 kb on - strandat 40.756 kb on - strandat 40.767 kb on - strandat 40.778 kb on + strandat 40.778 kb on + strandat 40.778 kb on + strandat 40.778 kb on + strandat 40.850 kb on + strand, within BACOVA_01255at 40.854 kb on - strand, within BACOVA_01255at 40.873 kb on + strand, within BACOVA_01255at 40.887 kb on + strand, within BACOVA_01255at 40.888 kb on - strand, within BACOVA_01255at 40.918 kb on - strand, within BACOVA_01255at 41.011 kb on + strand, within BACOVA_01255at 41.017 kb on + strand, within BACOVA_01255at 41.018 kb on - strand, within BACOVA_01255at 41.053 kb on - strand, within BACOVA_01255at 41.096 kb on + strand, within BACOVA_01255at 41.097 kb on - strand, within BACOVA_01255at 41.097 kb on - strand, within BACOVA_01255at 41.103 kb on + strand, within BACOVA_01255at 41.118 kb on + strand, within BACOVA_01255at 41.119 kb on - strand, within BACOVA_01255at 41.230 kb on + strand, within BACOVA_01255at 41.232 kb on + strand, within BACOVA_01255at 41.233 kb on - strand, within BACOVA_01255at 41.233 kb on - strand, within BACOVA_01255at 41.233 kb on - strand, within BACOVA_01255at 41.251 kb on - strand, within BACOVA_01255at 41.285 kb on - strand, within BACOVA_01255at 41.329 kb on - strandat 41.329 kb on - strandat 41.329 kb on - strandat 41.329 kb on - strandat 41.334 kb on + strandat 41.335 kb on - strandat 41.336 kb on + strandat 41.343 kb on + strandat 41.343 kb on + strandat 41.344 kb on - strandat 41.419 kb on - strandat 41.426 kb on + strandat 41.439 kb on - strandat 41.449 kb on - strandat 41.475 kb on + strandat 41.521 kb on - strandat 41.546 kb on + strandat 41.547 kb on - strandat 41.547 kb on - strandat 41.548 kb on + strandat 41.548 kb on + strandat 41.548 kb on + strandat 41.549 kb on - strandat 41.549 kb on - strandat 41.549 kb on - strandat 41.551 kb on - strandat 41.563 kb on + strandat 41.564 kb on - strandat 41.564 kb on - strandat 41.607 kb on + strand, within BACOVA_01256at 41.644 kb on - strand, within BACOVA_01256at 41.758 kb on + strand, within BACOVA_01256at 41.774 kb on + strand, within BACOVA_01256at 41.774 kb on + strand, within BACOVA_01256at 41.775 kb on - strand, within BACOVA_01256at 41.778 kb on + strand, within BACOVA_01256at 41.790 kb on - strand, within BACOVA_01256at 41.834 kb on + strand, within BACOVA_01256at 41.856 kb on + strand, within BACOVA_01256at 41.865 kb on - strand, within BACOVA_01256at 41.879 kb on - strand, within BACOVA_01256at 41.881 kb on + strand, within BACOVA_01256at 41.913 kb on - strand, within BACOVA_01256at 41.941 kb on + strand, within BACOVA_01256at 41.952 kb on + strand, within BACOVA_01256at 41.982 kb on - strand, within BACOVA_01256at 42.003 kb on + strand, within BACOVA_01256at 42.003 kb on + strand, within BACOVA_01256at 42.004 kb on - strand, within BACOVA_01256at 42.034 kb on - strand, within BACOVA_01256at 42.036 kb on + strand, within BACOVA_01256at 42.037 kb on - strand, within BACOVA_01256at 42.037 kb on - strand, within BACOVA_01256at 42.043 kb on + strand, within BACOVA_01256at 42.043 kb on + strand, within BACOVA_01256at 42.043 kb on + strand, within BACOVA_01256at 42.044 kb on - strand, within BACOVA_01256at 42.044 kb on - strand, within BACOVA_01256at 42.044 kb on - strand, within BACOVA_01256at 42.057 kb on - strand, within BACOVA_01256at 42.187 kb on - strand, within BACOVA_01256at 42.207 kb on + strand, within BACOVA_01256at 42.265 kb on + strand, within BACOVA_01256at 42.315 kb on + strand, within BACOVA_01256at 42.315 kb on + strand, within BACOVA_01256at 42.334 kb on + strand, within BACOVA_01256at 42.336 kb on + strand, within BACOVA_01256at 42.337 kb on - strand, within BACOVA_01256

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction BHI 1 x (C) complex media
remove
40,365 - -0.3
40,510 - BACOVA_01254 0.52 +1.1
40,634 - -1.3
40,637 - -1.0
40,682 - -1.0
40,684 - -0.3
40,713 - -0.5
40,716 - -0.2
40,719 - -0.7
40,748 - -1.6
40,749 + +0.7
40,756 - +1.4
40,756 - -1.3
40,767 - -1.5
40,778 + -1.0
40,778 + -1.3
40,778 + -0.1
40,778 + -0.1
40,850 + BACOVA_01255 0.20 -0.9
40,854 - BACOVA_01255 0.20 +0.7
40,873 + BACOVA_01255 0.23 +0.6
40,887 + BACOVA_01255 0.26 +0.3
40,888 - BACOVA_01255 0.26 -1.7
40,918 - BACOVA_01255 0.30 +0.5
41,011 + BACOVA_01255 0.44 +0.1
41,017 + BACOVA_01255 0.45 -1.5
41,018 - BACOVA_01255 0.46 -0.3
41,053 - BACOVA_01255 0.51 +0.5
41,096 + BACOVA_01255 0.57 +0.7
41,097 - BACOVA_01255 0.58 +0.4
41,097 - BACOVA_01255 0.58 -0.3
41,103 + BACOVA_01255 0.59 +0.5
41,118 + BACOVA_01255 0.61 +1.3
41,119 - BACOVA_01255 0.61 -0.6
41,230 + BACOVA_01255 0.78 -0.7
41,232 + BACOVA_01255 0.78 -1.8
41,233 - BACOVA_01255 0.78 -0.6
41,233 - BACOVA_01255 0.78 -1.4
41,233 - BACOVA_01255 0.78 -2.5
41,251 - BACOVA_01255 0.81 +0.7
41,285 - BACOVA_01255 0.86 -1.1
41,329 - +0.7
41,329 - -1.3
41,329 - -0.5
41,329 - +0.7
41,334 + +0.4
41,335 - -0.4
41,336 + -1.6
41,343 + +0.1
41,343 + -0.5
41,344 - -0.5
41,419 - -0.7
41,426 + -0.4
41,439 - +0.3
41,449 - -0.7
41,475 + -0.4
41,521 - +0.5
41,546 + -3.2
41,547 - +0.6
41,547 - -0.4
41,548 + +0.3
41,548 + -0.4
41,548 + +0.2
41,549 - +0.2
41,549 - -1.2
41,549 - +0.4
41,551 - +0.6
41,563 + -0.6
41,564 - -3.5
41,564 - -0.1
41,607 + BACOVA_01256 0.12 -1.3
41,644 - BACOVA_01256 0.15 -0.5
41,758 + BACOVA_01256 0.23 -0.3
41,774 + BACOVA_01256 0.24 -0.5
41,774 + BACOVA_01256 0.24 -0.6
41,775 - BACOVA_01256 0.24 -0.3
41,778 + BACOVA_01256 0.25 +0.4
41,790 - BACOVA_01256 0.25 +0.0
41,834 + BACOVA_01256 0.29 +0.8
41,856 + BACOVA_01256 0.30 -0.3
41,865 - BACOVA_01256 0.31 +0.1
41,879 - BACOVA_01256 0.32 +0.8
41,881 + BACOVA_01256 0.32 -0.6
41,913 - BACOVA_01256 0.35 -0.5
41,941 + BACOVA_01256 0.37 -2.1
41,952 + BACOVA_01256 0.38 -1.4
41,982 - BACOVA_01256 0.40 +0.3
42,003 + BACOVA_01256 0.41 -1.8
42,003 + BACOVA_01256 0.41 -0.6
42,004 - BACOVA_01256 0.41 +1.3
42,034 - BACOVA_01256 0.44 +0.1
42,036 + BACOVA_01256 0.44 -1.4
42,037 - BACOVA_01256 0.44 -2.2
42,037 - BACOVA_01256 0.44 +0.5
42,043 + BACOVA_01256 0.44 +0.1
42,043 + BACOVA_01256 0.44 -0.8
42,043 + BACOVA_01256 0.44 -1.3
42,044 - BACOVA_01256 0.44 -1.3
42,044 - BACOVA_01256 0.44 -1.6
42,044 - BACOVA_01256 0.44 +0.2
42,057 - BACOVA_01256 0.45 -1.0
42,187 - BACOVA_01256 0.55 -0.7
42,207 + BACOVA_01256 0.57 +0.0
42,265 + BACOVA_01256 0.61 -0.2
42,315 + BACOVA_01256 0.65 -0.6
42,315 + BACOVA_01256 0.65 +0.5
42,334 + BACOVA_01256 0.66 -0.9
42,336 + BACOVA_01256 0.66 -1.6
42,337 - BACOVA_01256 0.66 +0.3

Or see this region's nucleotide sequence