Strain Fitness in Escherichia fergusonii Becca around EFB2_03911

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
4,097,589	+				+0.8
4,097,589	+				-2.7
4,097,589	+				+0.6
4,097,589	+				-2.3
4,097,589	+				+1.3
4,097,589	+				+0.8
4,097,589	+				-2.0
4,097,590	-				-2.9
4,097,590	-				-1.6
4,097,590	-				+0.0
4,097,590	-				+0.3
4,097,590	-				+1.5
4,097,590	-				-1.2
4,097,594	+				-3.1
4,097,594	+				-0.2
4,097,594	+				+1.8
4,097,595	-				-2.4
4,097,595	-				+0.4
4,097,607	+				+0.4
4,097,608	-				+0.0
4,097,608	-				+1.1
4,097,610	+				-1.3
4,097,610	+				-0.9
4,097,610	+				+0.4
4,097,610	+				+1.3
4,097,610	+				-1.3
4,097,611	-				-0.6
4,097,611	-				+1.0
4,097,611	-				+1.4
4,097,611	-				+1.4
4,097,611	-				-0.4
4,097,611	-				+0.2
4,097,611	-				-3.3
4,097,611	-				-0.9
4,097,611	-				+0.5
4,097,611	-				+0.3
4,097,616	+				+1.1
4,097,616	+				+0.2
4,097,617	-				-0.5
4,097,617	-				+0.1
4,097,617	-				-0.2
4,097,618	+				+1.4
4,097,618	+				+0.1
4,097,618	+				-0.8
4,097,618	+				-0.0
4,097,618	+				+0.2
4,097,618	+				-1.9
4,097,618	+				-2.6
4,097,618	+				-2.7
4,097,618	+				+0.2
4,097,618	+				+1.1
4,097,618	+				-1.8
4,097,619	-				+1.5
4,097,619	-				-0.4
4,097,619	-				-2.5
4,097,619	-				+2.2
4,097,635	-				-0.2
4,097,658	+				-0.6
4,097,659	-				+1.1
4,097,662	+				+1.2
4,097,662	+				+1.1
4,097,662	+				-0.2
4,097,662	+				-1.9
4,097,662	+				-1.7
4,097,662	+				-0.0
4,097,663	-				+1.0
4,097,663	-				+1.3
4,097,663	-				-1.4
4,097,663	-				-0.1
4,097,663	-				-1.3
4,097,671	+				-0.6
4,097,671	+				+0.2
4,097,672	-				-0.2
4,097,677	+				-0.8
4,097,677	+				-0.2
4,097,677	+				-2.4
4,097,677	+				+1.4
4,097,677	+				-1.2
4,097,677	+				-0.4
4,097,678	-				+0.9
4,097,678	-				+1.0
4,097,678	-				+1.8
4,097,678	-				-0.7
4,097,678	-				-2.0
4,097,678	-				-0.2
4,097,712	+				-1.7
4,097,742	-				+1.3
4,097,742	-				-3.2
4,097,768	+				+0.9
4,097,769	-				+1.2
4,097,769	-				+1.0
4,097,769	-				-0.0
4,097,769	-				-1.0
4,097,776	+				+0.1
4,097,776	+				+1.8
4,097,777	-				+0.6
4,097,781	+				+1.4
4,097,860	+				+1.1
4,097,862	+		EFB2_03910	0.10	-2.3
4,097,862	+		EFB2_03910	0.10	+2.3
4,097,862	+		EFB2_03910	0.10	+0.9
4,097,862	+		EFB2_03910	0.10	+0.1
4,097,863	-		EFB2_03910	0.10	-1.0
4,097,863	-		EFB2_03910	0.10	+0.5
4,097,863	-		EFB2_03910	0.10	-0.7
4,097,895	+		EFB2_03910	0.14	-1.5
4,097,896	-		EFB2_03910	0.14	+0.3
4,097,981	-		EFB2_03910	0.25	-1.5
4,098,042	+		EFB2_03910	0.33	-1.1
4,098,042	+		EFB2_03910	0.33	+0.6
4,098,042	+		EFB2_03910	0.33	+1.1
4,098,043	-		EFB2_03910	0.33	-2.0
4,098,043	-		EFB2_03910	0.33	-0.4
4,098,049	+		EFB2_03910	0.34	+0.7
4,098,049	+		EFB2_03910	0.34	+1.3
4,098,050	-		EFB2_03910	0.34	-0.9
4,098,050	-		EFB2_03910	0.34	-0.3
4,098,149	+		EFB2_03910	0.46	+0.3
4,098,149	+		EFB2_03910	0.46	+1.0
4,098,150	-		EFB2_03910	0.46	-0.6
4,098,191	+		EFB2_03910	0.51	+0.2
4,098,191	+		EFB2_03910	0.51	-0.7
4,098,191	+		EFB2_03910	0.51	+1.0
4,098,191	+		EFB2_03910	0.51	+0.9
4,098,192	-		EFB2_03910	0.52	+0.4
4,098,192	-		EFB2_03910	0.52	+1.0
4,098,197	+		EFB2_03910	0.52	-0.6
4,098,216	+		EFB2_03910	0.55	-1.7
4,098,217	-		EFB2_03910	0.55	+0.8
4,098,229	+		EFB2_03910	0.56	-0.1
4,098,229	+		EFB2_03910	0.56	+2.0
4,098,230	-		EFB2_03910	0.56	-0.9
4,098,284	+		EFB2_03910	0.63	+0.9
4,098,284	+		EFB2_03910	0.63	+4.4
4,098,285	-		EFB2_03910	0.63	-2.5
4,098,285	-		EFB2_03910	0.63	+0.7
4,098,285	-		EFB2_03910	0.63	-2.2
4,098,290	+		EFB2_03910	0.64	-0.6
4,098,290	+		EFB2_03910	0.64	+1.1
4,098,290	+		EFB2_03910	0.64	+0.5
4,098,290	+		EFB2_03910	0.64	+0.3
4,098,291	-		EFB2_03910	0.64	+0.8
4,098,291	-		EFB2_03910	0.64	+0.2
4,098,291	-		EFB2_03910	0.64	-0.1
4,098,291	-		EFB2_03910	0.64	-2.1
4,098,291	-		EFB2_03910	0.64	+0.6
4,098,317	+		EFB2_03910	0.67	-2.2
4,098,384	+		EFB2_03910	0.76	+0.1
4,098,456	+		EFB2_03910	0.85	-0.1
4,098,456	+		EFB2_03910	0.85	-0.1
4,098,456	+		EFB2_03910	0.85	-0.2
4,098,457	-		EFB2_03910	0.85	+1.0
4,098,457	-		EFB2_03910	0.85	-1.1
4,098,457	-		EFB2_03910	0.85	+0.1
4,098,463	-		EFB2_03910	0.86	+0.7
4,098,520	+				+1.0
4,098,520	+				-0.6
4,098,520	+				+0.1
4,098,520	+				+0.5
4,098,520	+				+1.4
4,098,520	+				+0.7
4,098,520	+				+0.7
4,098,520	+				+2.0
4,098,520	+				-0.1
4,098,520	+				+1.4
4,098,520	+				-1.2
4,098,520	+				+0.1
4,098,520	+				+1.6
4,098,520	+				-0.1
4,098,520	+				+1.3
4,098,520	+				+1.1
4,098,520	+				-0.3
4,098,520	+				+1.0
4,098,520	+				+0.2
4,098,520	+				-1.4
4,098,520	+				+0.9
4,098,520	+				+0.1
4,098,520	+				-0.2
4,098,520	+				-0.6
4,098,520	+				+1.2
4,098,520	+				+0.6
4,098,520	+				-0.4
4,098,520	+				+0.2
4,098,520	+				-0.5
4,098,520	+				+0.1
4,098,521	-				-1.8
4,098,521	-				-1.7
4,098,521	-				-2.7
4,098,521	-				-3.4
4,098,521	-				-2.9
4,098,521	-				-1.6
4,098,521	-				-0.4
4,098,521	-				-1.3
4,098,521	-				-0.9
4,098,521	-				-1.6
4,098,521	-				-0.3
4,098,521	-				-2.9
4,098,521	-				-3.8
4,098,521	-				-0.5
4,098,521	-				-2.3
4,098,521	-				-0.3
4,098,521	-				-0.1
4,098,521	-				+1.4
4,098,521	-				-0.0
4,098,521	-				-2.4
4,098,521	-				-0.9
4,098,521	-				-2.0
4,098,521	-				-1.4
4,098,521	-				-1.5
4,098,521	-				-1.0
4,098,521	-				-3.4
4,098,521	-				-1.4
4,098,521	-				-1.6
4,098,522	+				+0.7
4,098,522	+				-1.1
4,098,522	+				-0.2
4,098,522	+				-2.7
4,098,522	+				-0.1
4,098,522	+				+0.2
4,098,522	+				+1.3
4,098,522	+				+0.4
4,098,522	+				+0.2
4,098,522	+				+0.2
4,098,522	+				+0.4
4,098,522	+				+0.8
4,098,522	+				+1.5
4,098,522	+				+1.1
4,098,522	+				+1.3
4,098,522	+				-3.9
4,098,523	-				+0.1
4,098,523	-				-4.2
4,098,523	-				-2.8
4,098,523	-				-2.3
4,098,523	-				-3.0
4,098,523	-				-1.1
4,098,523	-				-1.6
4,098,523	-				-2.6
4,098,523	-				-3.2
4,098,523	-				-0.3
4,098,523	-				-3.9
4,098,523	-				-0.9
4,098,523	-				-1.5
4,098,523	-				-1.2
4,098,592	+				-1.8
4,098,592	+				-4.7
4,098,592	+				-0.7
4,098,592	+				-3.0
4,098,593	-				-2.7
4,098,593	-				-0.5
4,098,593	-				-1.5
4,098,593	-				-1.3
4,098,642	-				-2.4
4,098,650	+				-3.1
4,098,650	+				-1.3
4,098,650	+				-1.8
4,098,650	+				-1.2
4,098,650	+				-4.6
4,098,650	+				-2.2
4,098,651	-				-3.0
4,098,698	+		EFB2_03911	0.13	-4.8
4,098,698	+		EFB2_03911	0.13	-3.8
4,098,698	+		EFB2_03911	0.13	-5.3
4,098,698	+		EFB2_03911	0.13	-1.0
4,098,698	+		EFB2_03911	0.13	-1.6
4,098,699	-		EFB2_03911	0.13	-3.1
4,098,699	-		EFB2_03911	0.13	-0.5
4,098,699	-		EFB2_03911	0.13	-5.5
4,098,750	-		EFB2_03911	0.19	-2.1
4,098,842	+		EFB2_03911	0.30	-3.8
4,098,842	+		EFB2_03911	0.30	-2.3
4,098,843	-		EFB2_03911	0.30	-4.3
4,098,843	-		EFB2_03911	0.30	-3.2
4,098,843	-		EFB2_03911	0.30	-3.1
4,098,853	+		EFB2_03911	0.31	-4.9
4,098,853	+		EFB2_03911	0.31	-3.2
4,098,853	+		EFB2_03911	0.31	-3.8
4,098,872	-		EFB2_03911	0.33	-1.0
4,098,872	-		EFB2_03911	0.33	-2.2
4,098,883	-		EFB2_03911	0.35	-1.2
4,098,894	-		EFB2_03911	0.36	-4.4
4,098,909	+		EFB2_03911	0.38	-5.3
4,098,909	+		EFB2_03911	0.38	-1.9
4,098,909	+		EFB2_03911	0.38	-1.7
4,098,909	+		EFB2_03911	0.38	+0.1
4,098,909	+		EFB2_03911	0.38	-1.3
4,098,909	+		EFB2_03911	0.38	-3.9
4,098,909	+		EFB2_03911	0.38	-0.5
4,098,909	+		EFB2_03911	0.38	-0.2
4,098,909	+		EFB2_03911	0.38	-3.2
4,098,909	+		EFB2_03911	0.38	-3.2
4,098,909	+		EFB2_03911	0.38	-0.3
4,098,909	+		EFB2_03911	0.38	-3.4
4,098,909	+		EFB2_03911	0.38	-1.0
4,098,909	+		EFB2_03911	0.38	-0.7
4,098,909	+		EFB2_03911	0.38	-4.4
4,098,909	+		EFB2_03911	0.38	-3.1
4,098,909	+		EFB2_03911	0.38	-2.9
4,098,909	+		EFB2_03911	0.38	-1.5
4,098,909	+		EFB2_03911	0.38	-4.3
4,098,909	+		EFB2_03911	0.38	-0.5
4,098,909	+		EFB2_03911	0.38	-1.6
4,098,909	+		EFB2_03911	0.38	-1.8
4,098,909	+		EFB2_03911	0.38	-2.6
4,098,909	+		EFB2_03911	0.38	-1.4
4,098,909	+		EFB2_03911	0.38	-3.7
4,098,909	+		EFB2_03911	0.38	-3.4
4,098,909	+		EFB2_03911	0.38	-5.0
4,098,909	+		EFB2_03911	0.38	-2.0
4,098,909	+		EFB2_03911	0.38	-2.2
4,098,909	+		EFB2_03911	0.38	-4.1
4,098,909	+		EFB2_03911	0.38	-2.2
4,098,909	+		EFB2_03911	0.38	-5.2
4,098,909	+		EFB2_03911	0.38	-3.0
4,098,909	+		EFB2_03911	0.38	-1.5
4,098,909	+		EFB2_03911	0.38	-2.1
4,098,909	+		EFB2_03911	0.38	-2.2
4,098,909	+		EFB2_03911	0.38	-3.6
4,098,909	+		EFB2_03911	0.38	-1.5
4,098,909	+		EFB2_03911	0.38	-2.3
4,098,909	+		EFB2_03911	0.38	-0.5
4,098,909	+		EFB2_03911	0.38	-3.0
4,098,909	+		EFB2_03911	0.38	-3.6
4,098,909	+		EFB2_03911	0.38	-1.2
4,098,909	+		EFB2_03911	0.38	-2.8
4,098,909	+		EFB2_03911	0.38	-1.9
4,098,909	+		EFB2_03911	0.38	-3.5
4,098,909	+		EFB2_03911	0.38	-1.3
4,098,909	+		EFB2_03911	0.38	-5.6
4,098,909	+		EFB2_03911	0.38	-2.0
4,098,909	+		EFB2_03911	0.38	-2.2
4,098,909	+		EFB2_03911	0.38	-3.8
4,098,909	+		EFB2_03911	0.38	-3.2
4,098,909	+		EFB2_03911	0.38	-2.9
4,098,909	+		EFB2_03911	0.38	-1.7
4,098,909	+		EFB2_03911	0.38	-0.4
4,098,909	+		EFB2_03911	0.38	-4.4
4,098,909	+		EFB2_03911	0.38	-3.9
4,098,909	+		EFB2_03911	0.38	+1.0
4,098,910	-		EFB2_03911	0.38	-4.1
4,098,910	-		EFB2_03911	0.38	-4.0
4,098,910	-		EFB2_03911	0.38	-1.6
4,098,910	-		EFB2_03911	0.38	-1.4
4,098,910	-		EFB2_03911	0.38	-0.5
4,098,910	-		EFB2_03911	0.38	-4.2
4,098,910	-		EFB2_03911	0.38	-2.0
4,098,910	-		EFB2_03911	0.38	-3.4
4,098,910	-		EFB2_03911	0.38	-1.0
4,098,910	-		EFB2_03911	0.38	-3.0
4,098,910	-		EFB2_03911	0.38	-4.5
4,098,910	-		EFB2_03911	0.38	-3.2
4,098,910	-		EFB2_03911	0.38	-1.4
4,098,910	-		EFB2_03911	0.38	-4.7
4,098,910	-		EFB2_03911	0.38	-4.7
4,098,910	-		EFB2_03911	0.38	-2.6
4,098,910	-		EFB2_03911	0.38	-3.7
4,098,910	-		EFB2_03911	0.38	-2.5
4,098,910	-		EFB2_03911	0.38	-0.3
4,098,910	-		EFB2_03911	0.38	-3.7
4,098,910	-		EFB2_03911	0.38	-3.7
4,098,910	-		EFB2_03911	0.38	-0.0
4,098,910	-		EFB2_03911	0.38	-0.9
4,098,910	-		EFB2_03911	0.38	-5.0
4,098,910	-		EFB2_03911	0.38	-1.9
4,098,910	-		EFB2_03911	0.38	-3.3
4,098,910	-		EFB2_03911	0.38	-1.0
4,098,910	-		EFB2_03911	0.38	-5.0
4,098,910	-		EFB2_03911	0.38	-2.2
4,098,910	-		EFB2_03911	0.38	-0.5
4,098,910	-		EFB2_03911	0.38	-4.2
4,098,910	-		EFB2_03911	0.38	-0.9
4,098,910	-		EFB2_03911	0.38	-1.6
4,098,910	-		EFB2_03911	0.38	-3.7
4,098,910	-		EFB2_03911	0.38	-0.7
4,098,910	-		EFB2_03911	0.38	+0.4
4,098,910	-		EFB2_03911	0.38	-2.0
4,098,910	-		EFB2_03911	0.38	-2.4
4,098,910	-		EFB2_03911	0.38	-1.8
4,098,910	-		EFB2_03911	0.38	-0.4
4,098,910	-		EFB2_03911	0.38	-2.5
4,098,910	-		EFB2_03911	0.38	+0.4
4,098,910	-		EFB2_03911	0.38	-3.3
4,098,910	-		EFB2_03911	0.38	-1.6
4,098,910	-		EFB2_03911	0.38	-2.8
4,098,910	-		EFB2_03911	0.38	-4.2
4,098,910	-		EFB2_03911	0.38	-4.0
4,098,910	-		EFB2_03911	0.38	-2.5
4,098,983	+		EFB2_03911	0.46	-3.9
4,098,983	+		EFB2_03911	0.46	-4.9
4,098,984	-		EFB2_03911	0.46	-2.6
4,098,984	-		EFB2_03911	0.46	-3.4
4,098,984	-		EFB2_03911	0.46	-4.0
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