Strain Fitness in Escherichia fergusonii Becca around EFB2_03676

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,842,560	+		EFB2_03675	0.15	+0.1
3,842,560	+		EFB2_03675	0.15	-0.4
3,842,561	-		EFB2_03675	0.15	-0.8
3,842,561	-		EFB2_03675	0.15	-0.3
3,842,561	-		EFB2_03675	0.15	-3.2
3,842,567	+		EFB2_03675	0.16	-0.1
3,842,568	-		EFB2_03675	0.16	+0.9
3,842,568	-		EFB2_03675	0.16	+0.1
3,842,589	+		EFB2_03675	0.18	+0.8
3,842,589	+		EFB2_03675	0.18	+0.4
3,842,590	-		EFB2_03675	0.18	-0.4
3,842,590	-		EFB2_03675	0.18	-1.2
3,842,634	+		EFB2_03675	0.22	+0.7
3,842,635	-		EFB2_03675	0.22	-4.1
3,842,635	-		EFB2_03675	0.22	-2.1
3,842,635	-		EFB2_03675	0.22	+1.0
3,842,653	-		EFB2_03675	0.24	-1.4
3,842,715	+		EFB2_03675	0.29	+0.2
3,842,766	-		EFB2_03675	0.34	+0.5
3,842,766	-		EFB2_03675	0.34	-1.1
3,842,774	+		EFB2_03675	0.35	-1.7
3,842,774	+		EFB2_03675	0.35	-3.2
3,842,774	+		EFB2_03675	0.35	+1.6
3,842,774	+		EFB2_03675	0.35	-2.0
3,842,774	+		EFB2_03675	0.35	-0.6
3,842,774	+		EFB2_03675	0.35	+1.2
3,842,774	+		EFB2_03675	0.35	+1.2
3,842,774	+		EFB2_03675	0.35	+2.1
3,842,774	+		EFB2_03675	0.35	-0.6
3,842,774	+		EFB2_03675	0.35	+1.2
3,842,774	+		EFB2_03675	0.35	+0.2
3,842,775	-		EFB2_03675	0.35	+2.1
3,842,775	-		EFB2_03675	0.35	-0.2
3,842,775	-		EFB2_03675	0.35	-1.3
3,842,775	-		EFB2_03675	0.35	+1.5
3,842,775	-		EFB2_03675	0.35	+0.1
3,842,775	-		EFB2_03675	0.35	+0.7
3,842,806	-		EFB2_03675	0.38	+0.7
3,842,806	-		EFB2_03675	0.38	+0.4
3,842,806	-		EFB2_03675	0.38	+0.4
3,842,806	-		EFB2_03675	0.38	+0.4
3,842,865	+		EFB2_03675	0.43	+1.0
3,842,865	+		EFB2_03675	0.43	-0.9
3,842,865	+		EFB2_03675	0.43	+1.0
3,842,865	+		EFB2_03675	0.43	-3.1
3,842,865	+		EFB2_03675	0.43	+0.1
3,842,865	+		EFB2_03675	0.43	-0.3
3,842,865	+		EFB2_03675	0.43	-0.6
3,842,865	+		EFB2_03675	0.43	+0.7
3,842,865	+		EFB2_03675	0.43	-0.7
3,842,865	+		EFB2_03675	0.43	-0.0
3,842,865	+		EFB2_03675	0.43	-0.2
3,842,865	+		EFB2_03675	0.43	+0.4
3,842,865	+		EFB2_03675	0.43	-2.0
3,842,865	+		EFB2_03675	0.43	+0.6
3,842,866	-		EFB2_03675	0.43	+1.6
3,842,866	-		EFB2_03675	0.43	+0.7
3,842,866	-		EFB2_03675	0.43	-1.7
3,842,866	-		EFB2_03675	0.43	+0.3
3,842,866	-		EFB2_03675	0.43	-2.4
3,842,866	-		EFB2_03675	0.43	+1.2
3,842,866	-		EFB2_03675	0.43	+0.2
3,842,866	-		EFB2_03675	0.43	+1.6
3,842,866	-		EFB2_03675	0.43	-1.0
3,842,866	-		EFB2_03675	0.43	+0.5
3,842,866	-		EFB2_03675	0.43	+0.0
3,842,866	-		EFB2_03675	0.43	+0.2
3,842,869	-		EFB2_03675	0.44	+0.2
3,842,942	+		EFB2_03675	0.50	-0.0
3,842,942	+		EFB2_03675	0.50	-2.6
3,842,943	-		EFB2_03675	0.50	-0.2
3,842,984	+		EFB2_03675	0.54	-3.0
3,842,984	+		EFB2_03675	0.54	-0.5
3,842,984	+		EFB2_03675	0.54	+0.4
3,842,985	-		EFB2_03675	0.54	+0.8
3,842,985	-		EFB2_03675	0.54	+1.0
3,842,985	-		EFB2_03675	0.54	+0.3
3,842,985	-		EFB2_03675	0.54	-1.3
3,842,985	-		EFB2_03675	0.54	+1.3
3,843,001	+		EFB2_03675	0.56	+0.1
3,843,001	+		EFB2_03675	0.56	+1.5
3,843,002	-		EFB2_03675	0.56	+0.0
3,843,039	+		EFB2_03675	0.59	-2.6
3,843,039	+		EFB2_03675	0.59	+0.8
3,843,039	+		EFB2_03675	0.59	+0.8
3,843,040	-		EFB2_03675	0.59	+2.6
3,843,040	-		EFB2_03675	0.59	+0.2
3,843,134	+		EFB2_03675	0.68	-2.3
3,843,134	+		EFB2_03675	0.68	-1.2
3,843,134	+		EFB2_03675	0.68	+1.0
3,843,135	-		EFB2_03675	0.68	+0.2
3,843,135	-		EFB2_03675	0.68	-3.1
3,843,135	-		EFB2_03675	0.68	-2.4
3,843,135	-		EFB2_03675	0.68	-0.3
3,843,135	-		EFB2_03675	0.68	+0.4
3,843,151	+		EFB2_03675	0.69	-0.6
3,843,152	-		EFB2_03675	0.69	-3.3
3,843,152	-		EFB2_03675	0.69	+0.1
3,843,152	-		EFB2_03675	0.69	-0.3
3,843,152	-		EFB2_03675	0.69	-0.9
3,843,152	-		EFB2_03675	0.69	-0.1
3,843,157	+		EFB2_03675	0.70	+0.1
3,843,157	+		EFB2_03675	0.70	+0.6
3,843,157	+		EFB2_03675	0.70	+0.9
3,843,158	-		EFB2_03675	0.70	-2.7
3,843,158	-		EFB2_03675	0.70	+1.7
3,843,158	-		EFB2_03675	0.70	-3.6
3,843,158	-		EFB2_03675	0.70	+0.9
3,843,169	+		EFB2_03675	0.71	-1.0
3,843,169	+		EFB2_03675	0.71	-1.0
3,843,169	+		EFB2_03675	0.71	-0.2
3,843,169	+		EFB2_03675	0.71	-3.4
3,843,169	+		EFB2_03675	0.71	-2.9
3,843,169	+		EFB2_03675	0.71	+0.1
3,843,169	+		EFB2_03675	0.71	+0.8
3,843,169	+		EFB2_03675	0.71	-0.5
3,843,169	+		EFB2_03675	0.71	-2.1
3,843,169	+		EFB2_03675	0.71	-0.2
3,843,169	+		EFB2_03675	0.71	+0.6
3,843,169	+		EFB2_03675	0.71	+0.5
3,843,169	+		EFB2_03675	0.71	+0.7
3,843,169	+		EFB2_03675	0.71	-0.0
3,843,169	+		EFB2_03675	0.71	+0.9
3,843,169	+		EFB2_03675	0.71	+2.8
3,843,169	+		EFB2_03675	0.71	+1.5
3,843,169	+		EFB2_03675	0.71	-1.6
3,843,169	+		EFB2_03675	0.71	+0.3
3,843,169	+		EFB2_03675	0.71	-0.4
3,843,169	+		EFB2_03675	0.71	-0.1
3,843,169	+		EFB2_03675	0.71	-1.4
3,843,169	+		EFB2_03675	0.71	+1.1
3,843,169	+		EFB2_03675	0.71	+2.7
3,843,170	-		EFB2_03675	0.71	-0.8
3,843,170	-		EFB2_03675	0.71	+0.2
3,843,170	-		EFB2_03675	0.71	-0.3
3,843,170	-		EFB2_03675	0.71	-0.6
3,843,170	-		EFB2_03675	0.71	-0.3
3,843,170	-		EFB2_03675	0.71	-0.0
3,843,170	-		EFB2_03675	0.71	+1.5
3,843,170	-		EFB2_03675	0.71	+2.2
3,843,170	-		EFB2_03675	0.71	-0.5
3,843,170	-		EFB2_03675	0.71	+0.1
3,843,170	-		EFB2_03675	0.71	-1.3
3,843,170	-		EFB2_03675	0.71	+0.7
3,843,170	-		EFB2_03675	0.71	-2.1
3,843,197	+		EFB2_03675	0.74	-0.4
3,843,198	-		EFB2_03675	0.74	+0.5
3,843,198	-		EFB2_03675	0.74	-2.2
3,843,231	+		EFB2_03675	0.77	-0.1
3,843,231	+		EFB2_03675	0.77	+0.4
3,843,232	-		EFB2_03675	0.77	-0.1
3,843,232	-		EFB2_03675	0.77	+2.3
3,843,259	+		EFB2_03675	0.79	-1.9
3,843,259	+		EFB2_03675	0.79	+1.1
3,843,259	+		EFB2_03675	0.79	+1.2
3,843,260	-		EFB2_03675	0.79	-0.5
3,843,260	-		EFB2_03675	0.79	+3.3
3,843,293	+		EFB2_03675	0.82	-2.3
3,843,294	-		EFB2_03675	0.82	-0.7
3,843,294	-		EFB2_03675	0.82	-0.7
3,843,294	-		EFB2_03675	0.82	-0.4
3,843,294	-		EFB2_03675	0.82	-2.4
3,843,305	+		EFB2_03675	0.83	+0.6
3,843,306	-		EFB2_03675	0.83	+1.3
3,843,369	+		EFB2_03675	0.89	+1.3
3,843,369	+		EFB2_03675	0.89	-0.5
3,843,369	+		EFB2_03675	0.89	-0.2
3,843,369	+		EFB2_03675	0.89	+0.2
3,843,369	+		EFB2_03675	0.89	-1.1
3,843,369	+		EFB2_03675	0.89	+0.5
3,843,369	+		EFB2_03675	0.89	+0.7
3,843,369	+		EFB2_03675	0.89	+1.2
3,843,369	+		EFB2_03675	0.89	+0.2
3,843,369	+		EFB2_03675	0.89	-1.4
3,843,369	+		EFB2_03675	0.89	-0.3
3,843,369	+		EFB2_03675	0.89	+1.4
3,843,369	+		EFB2_03675	0.89	-1.3
3,843,369	+		EFB2_03675	0.89	-0.5
3,843,369	+		EFB2_03675	0.89	+1.1
3,843,369	+		EFB2_03675	0.89	+1.7
3,843,369	+		EFB2_03675	0.89	+0.4
3,843,369	+		EFB2_03675	0.89	-2.9
3,843,369	+		EFB2_03675	0.89	-1.9
3,843,369	+		EFB2_03675	0.89	+1.8
3,843,369	+		EFB2_03675	0.89	+1.6
3,843,369	+		EFB2_03675	0.89	-0.6
3,843,369	+		EFB2_03675	0.89	-0.7
3,843,369	+		EFB2_03675	0.89	-2.2
3,843,369	+		EFB2_03675	0.89	+0.4
3,843,369	+		EFB2_03675	0.89	+0.6
3,843,369	+		EFB2_03675	0.89	+0.3
3,843,369	+		EFB2_03675	0.89	+1.1
3,843,369	+		EFB2_03675	0.89	+0.2
3,843,369	+		EFB2_03675	0.89	-2.2
3,843,369	+		EFB2_03675	0.89	+0.1
3,843,369	+		EFB2_03675	0.89	+0.8
3,843,369	+		EFB2_03675	0.89	+0.3
3,843,369	+		EFB2_03675	0.89	+0.0
3,843,369	+		EFB2_03675	0.89	+0.2
3,843,369	+		EFB2_03675	0.89	+3.2
3,843,369	+		EFB2_03675	0.89	+0.2
3,843,369	+		EFB2_03675	0.89	-0.9
3,843,369	+		EFB2_03675	0.89	-3.2
3,843,369	+		EFB2_03675	0.89	+0.1
3,843,370	-		EFB2_03675	0.89	+1.3
3,843,370	-		EFB2_03675	0.89	+0.8
3,843,370	-		EFB2_03675	0.89	-0.1
3,843,370	-		EFB2_03675	0.89	+2.9
3,843,370	-		EFB2_03675	0.89	+0.1
3,843,370	-		EFB2_03675	0.89	+0.9
3,843,370	-		EFB2_03675	0.89	-1.1
3,843,370	-		EFB2_03675	0.89	+0.7
3,843,370	-		EFB2_03675	0.89	-0.2
3,843,370	-		EFB2_03675	0.89	+2.3
3,843,370	-		EFB2_03675	0.89	+0.0
3,843,370	-		EFB2_03675	0.89	+0.8
3,843,370	-		EFB2_03675	0.89	+1.1
3,843,370	-		EFB2_03675	0.89	-0.3
3,843,370	-		EFB2_03675	0.89	-0.5
3,843,370	-		EFB2_03675	0.89	-3.7
3,843,370	-		EFB2_03675	0.89	+2.2
3,843,370	-		EFB2_03675	0.89	+0.4
3,843,373	+		EFB2_03675	0.90	-0.1
3,843,373	+		EFB2_03675	0.90	+0.3
3,843,373	+		EFB2_03675	0.90	-0.4
3,843,373	+		EFB2_03675	0.90	+1.5
3,843,373	+		EFB2_03675	0.90	+1.0
3,843,374	-		EFB2_03675	0.90	-2.2
3,843,374	-		EFB2_03675	0.90	+0.1
3,843,406	+				+1.5
3,843,407	-				-1.1
3,843,407	-				-0.2
3,843,484	+				-1.9
3,843,484	+				+0.3
3,843,484	+				-3.1
3,843,484	+				+1.1
3,843,484	+				+0.7
3,843,484	+				+0.2
3,843,484	+				-1.7
3,843,484	+				-0.4
3,843,484	+				-0.4
3,843,484	+				-2.3
3,843,484	+				-4.6
3,843,485	-				-1.6
3,843,485	-				+1.2
3,843,485	-				-0.6
3,843,485	-				-0.2
3,843,485	-				-0.9
3,843,485	-				-0.9
3,843,485	-				-0.5
3,843,485	-				+1.6
3,843,485	-				+0.6
3,843,503	-				+0.9
3,843,505	+				+0.4
3,843,505	+				-0.5
3,843,505	+				+2.0
3,843,506	-				-0.4
3,843,506	-				+0.8
3,843,506	-				+1.4
3,843,506	-				-0.3
3,843,512	-				+2.5
3,843,512	-				-1.0
3,843,512	-				+1.2
3,843,512	-				-2.6
3,843,548	+		EFB2_03676	0.18	-0.2
3,843,549	-		EFB2_03676	0.18	-2.7
3,843,549	-		EFB2_03676	0.18	-0.1
3,843,549	-		EFB2_03676	0.18	+1.4
3,843,549	-		EFB2_03676	0.18	+1.0
3,843,572	+		EFB2_03676	0.29	-1.3
3,843,572	+		EFB2_03676	0.29	-0.3
3,843,572	+		EFB2_03676	0.29	-0.2
3,843,572	+		EFB2_03676	0.29	-0.4
3,843,572	+		EFB2_03676	0.29	+2.7
3,843,573	-		EFB2_03676	0.30	+1.6
3,843,573	-		EFB2_03676	0.30	+0.8
3,843,573	-		EFB2_03676	0.30	-0.3
3,843,573	-		EFB2_03676	0.30	-1.0
3,843,601	+		EFB2_03676	0.43	-0.9
3,843,601	+		EFB2_03676	0.43	+0.4
3,843,601	+		EFB2_03676	0.43	+1.1
3,843,601	+		EFB2_03676	0.43	-1.4
3,843,601	+		EFB2_03676	0.43	-0.3
3,843,601	+		EFB2_03676	0.43	-0.2
3,843,602	-		EFB2_03676	0.43	-1.6
3,843,602	-		EFB2_03676	0.43	-0.9
3,843,602	-		EFB2_03676	0.43	+0.8
3,843,602	-		EFB2_03676	0.43	-0.4
3,843,602	-		EFB2_03676	0.43	-0.9
3,843,602	-		EFB2_03676	0.43	+0.9
3,843,602	-		EFB2_03676	0.43	+0.0
3,843,602	-		EFB2_03676	0.43	+0.8
3,843,650	+		EFB2_03676	0.66	-3.7
3,843,650	+		EFB2_03676	0.66	-0.4
3,843,651	-		EFB2_03676	0.66	-2.2
3,843,651	-		EFB2_03676	0.66	+2.3
3,843,651	-		EFB2_03676	0.66	-0.3
3,843,651	-		EFB2_03676	0.66	+0.6
3,843,660	+		EFB2_03676	0.70	+0.8
3,843,660	+		EFB2_03676	0.70	+0.7
3,843,660	+		EFB2_03676	0.70	+0.1
3,843,660	+		EFB2_03676	0.70	+0.9
3,843,660	+		EFB2_03676	0.70	-1.8
3,843,660	+		EFB2_03676	0.70	+0.2
3,843,661	-		EFB2_03676	0.71	-1.6
3,843,661	-		EFB2_03676	0.71	-1.6
3,843,661	-		EFB2_03676	0.71	-0.5
3,843,661	-		EFB2_03676	0.71	-0.3
3,843,661	-		EFB2_03676	0.71	+1.2
3,843,661	-		EFB2_03676	0.71	+1.5
3,843,661	-		EFB2_03676	0.71	+0.6
3,843,661	-		EFB2_03676	0.71	+1.6
3,843,661	-		EFB2_03676	0.71	-0.1
3,843,661	-		EFB2_03676	0.71	-0.6
3,843,661	-		EFB2_03676	0.71	+0.7
3,843,661	-		EFB2_03676	0.71	+2.0
3,843,661	-		EFB2_03676	0.71	+0.5
3,843,661	-		EFB2_03676	0.71	+1.7
3,843,661	-		EFB2_03676	0.71	-0.1
3,843,662	+		EFB2_03676	0.71	-2.2
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