Strain Fitness in Escherichia fergusonii Becca around EFB2_03493

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,641,670	+		EFB2_03492	0.11	-1.8
3,641,670	+		EFB2_03492	0.11	+0.5
3,641,671	-		EFB2_03492	0.11	+0.7
3,641,671	-		EFB2_03492	0.11	+1.0
3,641,734	+		EFB2_03492	0.17	-1.2
3,641,741	+		EFB2_03492	0.18	+0.4
3,641,741	+		EFB2_03492	0.18	+1.3
3,641,741	+		EFB2_03492	0.18	+2.3
3,641,741	+		EFB2_03492	0.18	-0.8
3,641,741	+		EFB2_03492	0.18	-0.6
3,641,742	-		EFB2_03492	0.18	-1.4
3,641,742	-		EFB2_03492	0.18	+0.9
3,641,742	-		EFB2_03492	0.18	+1.0
3,641,742	-		EFB2_03492	0.18	-0.4
3,641,742	-		EFB2_03492	0.18	+1.6
3,641,742	-		EFB2_03492	0.18	-1.0
3,641,742	-		EFB2_03492	0.18	-1.1
3,641,742	-		EFB2_03492	0.18	-0.2
3,641,842	+		EFB2_03492	0.27	+0.5
3,641,912	+		EFB2_03492	0.33	+0.4
3,641,946	+		EFB2_03492	0.36	+1.0
3,641,946	+		EFB2_03492	0.36	+1.7
3,641,947	-		EFB2_03492	0.36	-0.3
3,641,947	-		EFB2_03492	0.36	-0.7
3,641,947	-		EFB2_03492	0.36	+0.5
3,641,947	-		EFB2_03492	0.36	-0.9
3,641,947	-		EFB2_03492	0.36	+0.7
3,641,947	-		EFB2_03492	0.36	-0.6
3,641,948	+		EFB2_03492	0.37	-0.2
3,641,949	-		EFB2_03492	0.37	+0.8
3,641,973	+		EFB2_03492	0.39	+1.0
3,641,974	-		EFB2_03492	0.39	-0.6
3,641,974	-		EFB2_03492	0.39	+0.7
3,641,974	-		EFB2_03492	0.39	-2.7
3,641,974	-		EFB2_03492	0.39	+0.7
3,642,000	-		EFB2_03492	0.41	+1.1
3,642,000	-		EFB2_03492	0.41	+0.1
3,642,024	-		EFB2_03492	0.44	+0.0
3,642,024	-		EFB2_03492	0.44	-0.7
3,642,045	+		EFB2_03492	0.45	-0.6
3,642,045	+		EFB2_03492	0.45	-0.0
3,642,045	+		EFB2_03492	0.45	+1.1
3,642,045	+		EFB2_03492	0.45	+0.5
3,642,045	+		EFB2_03492	0.45	-1.5
3,642,046	-		EFB2_03492	0.46	+1.1
3,642,046	-		EFB2_03492	0.46	-1.5
3,642,046	-		EFB2_03492	0.46	+0.2
3,642,046	-		EFB2_03492	0.46	+1.7
3,642,046	-		EFB2_03492	0.46	-0.1
3,642,046	-		EFB2_03492	0.46	+1.7
3,642,046	-		EFB2_03492	0.46	+0.6
3,642,049	+		EFB2_03492	0.46	-0.2
3,642,049	+		EFB2_03492	0.46	+1.1
3,642,049	+		EFB2_03492	0.46	-0.7
3,642,049	+		EFB2_03492	0.46	-2.6
3,642,049	+		EFB2_03492	0.46	+1.0
3,642,049	+		EFB2_03492	0.46	-0.3
3,642,049	+		EFB2_03492	0.46	-0.5
3,642,050	-		EFB2_03492	0.46	-0.4
3,642,050	-		EFB2_03492	0.46	-1.3
3,642,084	+		EFB2_03492	0.49	-0.5
3,642,084	+		EFB2_03492	0.49	-0.5
3,642,084	+		EFB2_03492	0.49	+0.2
3,642,084	+		EFB2_03492	0.49	-1.3
3,642,084	+		EFB2_03492	0.49	+2.2
3,642,084	+		EFB2_03492	0.49	-1.4
3,642,084	+		EFB2_03492	0.49	+0.7
3,642,085	-		EFB2_03492	0.49	-0.9
3,642,085	-		EFB2_03492	0.49	-0.8
3,642,085	-		EFB2_03492	0.49	+1.7
3,642,085	-		EFB2_03492	0.49	-0.6
3,642,085	-		EFB2_03492	0.49	-0.7
3,642,150	-		EFB2_03492	0.55	+0.4
3,642,150	-		EFB2_03492	0.55	-2.0
3,642,179	-		EFB2_03492	0.58	-0.5
3,642,179	-		EFB2_03492	0.58	+0.3
3,642,179	-		EFB2_03492	0.58	+1.1
3,642,223	+		EFB2_03492	0.62	+0.8
3,642,224	-		EFB2_03492	0.62	+3.1
3,642,224	-		EFB2_03492	0.62	-0.0
3,642,224	-		EFB2_03492	0.62	+0.6
3,642,224	-		EFB2_03492	0.62	-1.9
3,642,258	-		EFB2_03492	0.65	+0.3
3,642,299	+		EFB2_03492	0.69	-1.0
3,642,299	+		EFB2_03492	0.69	-0.6
3,642,299	+		EFB2_03492	0.69	+1.9
3,642,300	-		EFB2_03492	0.69	-1.2
3,642,442	+		EFB2_03492	0.82	-1.8
3,642,443	-		EFB2_03492	0.82	+0.4
3,642,453	+		EFB2_03492	0.83	-0.6
3,642,453	+		EFB2_03492	0.83	+3.1
3,642,454	-		EFB2_03492	0.83	-0.5
3,642,476	+		EFB2_03492	0.85	-0.7
3,642,476	+		EFB2_03492	0.85	+1.6
3,642,477	-		EFB2_03492	0.85	-2.8
3,642,506	+		EFB2_03492	0.88	-1.4
3,642,507	-		EFB2_03492	0.88	-2.9
3,642,507	-		EFB2_03492	0.88	-0.6
3,642,507	-		EFB2_03492	0.88	+0.3
3,642,544	+				-0.5
3,642,544	+				-3.4
3,642,544	+				+0.3
3,642,544	+				-0.8
3,642,544	+				+2.1
3,642,544	+				+0.8
3,642,545	-				-1.6
3,642,545	-				-0.8
3,642,545	-				-1.1
3,642,545	-				+0.8
3,642,545	-				+0.5
3,642,545	-				+1.4
3,642,545	-				-0.6
3,642,567	+				+0.1
3,642,568	-				-0.6
3,642,593	+				-2.1
3,642,593	+				+0.4
3,642,593	+				-0.4
3,642,593	+				-1.6
3,642,593	+				-0.6
3,642,593	+				-1.3
3,642,594	-				-2.2
3,642,594	-				+0.4
3,642,594	-				-2.4
3,642,594	-				-0.1
3,642,594	-				-3.2
3,642,594	-				+0.7
3,642,594	-				-1.4
3,642,594	-				-0.2
3,642,594	-				+1.1
3,642,641	+				+0.4
3,642,641	+				+1.2
3,642,642	-				+0.3
3,642,642	-				+1.2
3,642,642	-				-3.8
3,642,650	-				-1.2
3,642,650	-				-0.1
3,642,650	-				-2.9
3,642,715	+		EFB2_03493	0.34	+2.1
3,642,715	+		EFB2_03493	0.34	-0.2
3,642,715	+		EFB2_03493	0.34	-2.5
3,642,715	+		EFB2_03493	0.34	+0.2
3,642,715	+		EFB2_03493	0.34	-1.4
3,642,715	+		EFB2_03493	0.34	-2.2
3,642,716	-		EFB2_03493	0.34	+1.0
3,642,716	-		EFB2_03493	0.34	-0.3
3,642,716	-		EFB2_03493	0.34	-0.3
3,642,716	-		EFB2_03493	0.34	+0.8
3,642,752	+		EFB2_03493	0.53	-3.5
3,642,752	+		EFB2_03493	0.53	-1.5
3,642,752	+		EFB2_03493	0.53	-0.6
3,642,752	+		EFB2_03493	0.53	+2.2
3,642,752	+		EFB2_03493	0.53	+2.5
3,642,752	+		EFB2_03493	0.53	-1.3
3,642,752	+		EFB2_03493	0.53	-3.2
3,642,752	+		EFB2_03493	0.53	-0.2
3,642,752	+		EFB2_03493	0.53	+0.6
3,642,753	-		EFB2_03493	0.53	+3.1
3,642,753	-		EFB2_03493	0.53	-3.0
3,642,753	-		EFB2_03493	0.53	+1.5
3,642,753	-		EFB2_03493	0.53	+0.2
3,642,753	-		EFB2_03493	0.53	+0.0
3,642,753	-		EFB2_03493	0.53	+0.7
3,642,753	-		EFB2_03493	0.53	-0.3
3,642,753	-		EFB2_03493	0.53	+0.4
3,642,753	-		EFB2_03493	0.53	-2.9
3,642,763	+		EFB2_03493	0.58	+1.0
3,642,763	+		EFB2_03493	0.58	-2.4
3,642,763	+		EFB2_03493	0.58	-0.3
3,642,763	+		EFB2_03493	0.58	+2.9
3,642,763	+		EFB2_03493	0.58	+2.1
3,642,763	+		EFB2_03493	0.58	+1.8
3,642,763	+		EFB2_03493	0.58	+0.3
3,642,763	+		EFB2_03493	0.58	+0.4
3,642,763	+		EFB2_03493	0.58	+0.4
3,642,763	+		EFB2_03493	0.58	+1.1
3,642,763	+		EFB2_03493	0.58	-0.9
3,642,763	+		EFB2_03493	0.58	+1.4
3,642,763	+		EFB2_03493	0.58	+0.9
3,642,763	+		EFB2_03493	0.58	-0.1
3,642,763	+		EFB2_03493	0.58	+1.3
3,642,763	+		EFB2_03493	0.58	-2.7
3,642,763	+		EFB2_03493	0.58	+1.3
3,642,763	+		EFB2_03493	0.58	-0.2
3,642,763	+		EFB2_03493	0.58	+0.8
3,642,763	+		EFB2_03493	0.58	-0.6
3,642,763	+		EFB2_03493	0.58	-0.5
3,642,763	+		EFB2_03493	0.58	-3.6
3,642,763	+		EFB2_03493	0.58	+1.8
3,642,763	+		EFB2_03493	0.58	-1.3
3,642,763	+		EFB2_03493	0.58	-0.0
3,642,763	+		EFB2_03493	0.58	-0.5
3,642,763	+		EFB2_03493	0.58	-1.5
3,642,763	+		EFB2_03493	0.58	-1.6
3,642,763	+		EFB2_03493	0.58	+0.8
3,642,763	+		EFB2_03493	0.58	+1.2
3,642,763	+		EFB2_03493	0.58	+1.7
3,642,763	+		EFB2_03493	0.58	-1.2
3,642,763	+		EFB2_03493	0.58	+0.1
3,642,763	+		EFB2_03493	0.58	+1.0
3,642,764	-		EFB2_03493	0.59	+0.2
3,642,764	-		EFB2_03493	0.59	+1.3
3,642,764	-		EFB2_03493	0.59	-0.7
3,642,764	-		EFB2_03493	0.59	-1.3
3,642,764	-		EFB2_03493	0.59	+1.6
3,642,764	-		EFB2_03493	0.59	+0.1
3,642,764	-		EFB2_03493	0.59	-3.0
3,642,764	-		EFB2_03493	0.59	-0.7
3,642,764	-		EFB2_03493	0.59	-1.2
3,642,764	-		EFB2_03493	0.59	+1.3
3,642,764	-		EFB2_03493	0.59	-2.2
3,642,764	-		EFB2_03493	0.59	-1.2
3,642,764	-		EFB2_03493	0.59	+0.9
3,642,764	-		EFB2_03493	0.59	-1.8
3,642,764	-		EFB2_03493	0.59	-0.0
3,642,764	-		EFB2_03493	0.59	-0.9
3,642,764	-		EFB2_03493	0.59	+1.5
3,642,764	-		EFB2_03493	0.59	-0.1
3,642,764	-		EFB2_03493	0.59	+0.3
3,642,764	-		EFB2_03493	0.59	+0.2
3,642,764	-		EFB2_03493	0.59	+2.3
3,642,764	-		EFB2_03493	0.59	+0.3
3,642,764	-		EFB2_03493	0.59	+1.2
3,642,764	-		EFB2_03493	0.59	-2.6
3,642,764	-		EFB2_03493	0.59	-1.4
3,642,764	-		EFB2_03493	0.59	+0.6
3,642,764	-		EFB2_03493	0.59	+0.9
3,642,764	-		EFB2_03493	0.59	+1.1
3,642,764	-		EFB2_03493	0.59	-0.3
3,642,764	-		EFB2_03493	0.59	-2.2
3,642,764	-		EFB2_03493	0.59	+0.3
3,642,773	-		EFB2_03493	0.63	-1.2
3,642,773	-		EFB2_03493	0.63	-2.1
3,642,782	+		EFB2_03493	0.68	-1.8
3,642,782	+		EFB2_03493	0.68	+1.4
3,642,782	+		EFB2_03493	0.68	-0.5
3,642,783	-		EFB2_03493	0.68	+1.4
3,642,783	-		EFB2_03493	0.68	+2.1
3,642,783	-		EFB2_03493	0.68	+0.8
3,642,814	+		EFB2_03493	0.84	+2.6
3,642,847	+				-2.1
3,642,847	+				+0.1
3,642,847	+				-2.4
3,642,847	+				+0.3
3,642,847	+				+1.3
3,642,847	+				-0.4
3,642,847	+				-1.6
3,642,847	+				-0.8
3,642,848	-				+1.7
3,642,862	-				+0.2
3,642,862	-				-0.1
3,642,862	-				-0.3
3,642,862	-				-0.7
3,642,880	+				-0.4
3,642,880	+				-2.6
3,642,880	+				-1.8
3,642,880	+				-1.2
3,642,881	-				-1.2
3,642,881	-				-3.4
3,642,881	-				-1.9
3,642,890	+				-0.2
3,642,890	+				+0.8
3,642,890	+				+1.2
3,642,891	-				+1.2
3,642,891	-				-2.4
3,642,891	-				+2.1
3,642,891	-				-1.3
3,642,891	-				+0.6
3,642,891	-				+0.3
3,642,891	-				+0.8
3,642,891	-				-0.4
3,642,920	+				+1.2
3,642,920	+				-2.4
3,642,921	-				+1.3
3,642,921	-				-0.4
3,642,959	+				+0.4
3,642,959	+				-0.9
3,642,960	-				+1.0
3,642,960	-				+0.8
3,643,017	-				+4.0
3,643,017	-				-0.3
3,643,071	+				-0.3
3,643,072	-				-0.4
3,643,107	+				+1.3
3,643,107	+				-1.1
3,643,108	-				-0.1
3,643,108	-				+2.0
3,643,108	-				+1.4
3,643,173	+		EFB2_03494	0.10	+0.2
3,643,173	+		EFB2_03494	0.10	-1.5
3,643,173	+		EFB2_03494	0.10	-1.0
3,643,173	+		EFB2_03494	0.10	+0.5
3,643,174	-		EFB2_03494	0.10	+0.4
3,643,174	-		EFB2_03494	0.10	+0.9
3,643,174	-		EFB2_03494	0.10	-1.7
3,643,175	+		EFB2_03494	0.10	-1.9
3,643,175	+		EFB2_03494	0.10	+1.9
3,643,175	+		EFB2_03494	0.10	-0.5
3,643,175	+		EFB2_03494	0.10	-1.3
3,643,175	+		EFB2_03494	0.10	-0.9
3,643,175	+		EFB2_03494	0.10	+0.7
3,643,175	+		EFB2_03494	0.10	+0.4
3,643,176	-		EFB2_03494	0.10	+0.8
3,643,176	-		EFB2_03494	0.10	-0.1
3,643,176	-		EFB2_03494	0.10	+0.8
3,643,176	-		EFB2_03494	0.10	-1.0
3,643,176	-		EFB2_03494	0.10	+0.1
3,643,176	-		EFB2_03494	0.10	-0.0
3,643,176	-		EFB2_03494	0.10	+0.7
3,643,176	-		EFB2_03494	0.10	+0.5
3,643,176	-		EFB2_03494	0.10	+0.2
3,643,176	-		EFB2_03494	0.10	-0.9
3,643,176	-		EFB2_03494	0.10	+0.0
3,643,176	-		EFB2_03494	0.10	-0.8
3,643,188	+		EFB2_03494	0.11	-0.4
3,643,189	-		EFB2_03494	0.11	-0.2
3,643,189	-		EFB2_03494	0.11	-3.0
3,643,222	-		EFB2_03494	0.13	+0.6
3,643,287	+		EFB2_03494	0.16	-0.2
3,643,288	-		EFB2_03494	0.16	+0.2
3,643,288	-		EFB2_03494	0.16	-0.0
3,643,288	-		EFB2_03494	0.16	+0.8
3,643,288	-		EFB2_03494	0.16	-0.2
3,643,288	-		EFB2_03494	0.16	-1.7
3,643,288	-		EFB2_03494	0.16	-1.7
3,643,288	-		EFB2_03494	0.16	+1.1
3,643,288	-		EFB2_03494	0.16	+0.6
3,643,312	+		EFB2_03494	0.17	+1.5
3,643,312	+		EFB2_03494	0.17	-0.0
3,643,313	-		EFB2_03494	0.17	-1.4
3,643,332	-		EFB2_03494	0.18	+1.0
3,643,332	-		EFB2_03494	0.18	+0.9
3,643,376	-		EFB2_03494	0.20	-2.7
3,643,408	-		EFB2_03494	0.21	+0.6
3,643,408	-		EFB2_03494	0.21	-1.1
3,643,431	+		EFB2_03494	0.22	+1.2
3,643,431	+		EFB2_03494	0.22	-0.7
3,643,432	-		EFB2_03494	0.23	+0.7
3,643,432	-		EFB2_03494	0.23	+2.8
3,643,432	-		EFB2_03494	0.23	-1.7
3,643,472	+		EFB2_03494	0.24	+0.7
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3,643,618	-		EFB2_03494	0.31	-1.8
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3,643,697	+		EFB2_03494	0.35	-0.7
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3,643,697	+		EFB2_03494	0.35	+1.3
3,643,697	+		EFB2_03494	0.35	+0.1
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3,643,697	+		EFB2_03494	0.35	+0.8
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3,643,698	-		EFB2_03494	0.35	+0.3
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3,643,813	-		EFB2_03494	0.41	-1.9
3,643,813	-		EFB2_03494	0.41	+0.5
3,643,813	-		EFB2_03494	0.41	-0.0