Strain Fitness in Escherichia fergusonii Becca around EFB2_03185

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,342,583	+				+1.3
3,342,584	-				-0.4
3,342,614	+				-0.3
3,342,614	+				+0.9
3,342,614	+				-2.3
3,342,614	+				-0.5
3,342,614	+				+0.9
3,342,614	+				-0.9
3,342,614	+				+0.3
3,342,614	+				-1.5
3,342,614	+				+0.7
3,342,614	+				-1.5
3,342,614	+				+0.1
3,342,614	+				-1.9
3,342,614	+				-1.0
3,342,614	+				+2.3
3,342,614	+				-3.3
3,342,614	+				-1.3
3,342,614	+				-0.8
3,342,614	+				-1.3
3,342,614	+				-1.4
3,342,614	+				-1.9
3,342,614	+				+1.0
3,342,614	+				-0.7
3,342,614	+				+0.1
3,342,614	+				+0.1
3,342,614	+				+0.6
3,342,614	+				-0.2
3,342,614	+				-1.2
3,342,614	+				+0.6
3,342,614	+				-3.8
3,342,614	+				+0.6
3,342,614	+				-0.7
3,342,615	-				-0.3
3,342,615	-				-1.3
3,342,615	-				-1.5
3,342,615	-				+0.5
3,342,615	-				-0.4
3,342,615	-				-2.3
3,342,615	-				-2.9
3,342,615	-				-3.2
3,342,615	-				-0.9
3,342,615	-				+0.6
3,342,615	-				+0.2
3,342,615	-				+0.4
3,342,615	-				-1.6
3,342,615	-				-1.3
3,342,615	-				+1.0
3,342,615	-				-0.2
3,342,615	-				+0.8
3,342,615	-				+0.8
3,342,615	-				+0.2
3,342,615	-				+1.8
3,342,616	+				-1.1
3,342,616	+				-1.0
3,342,616	+				-1.3
3,342,616	+				-0.9
3,342,616	+				+0.7
3,342,617	-				-0.3
3,342,617	-				-0.7
3,342,635	+				+1.8
3,342,635	+				+0.5
3,342,635	+				-1.8
3,342,635	+				+0.7
3,342,635	+				-1.2
3,342,635	+				-1.3
3,342,636	-				-0.9
3,342,636	-				+1.5
3,342,636	-				+0.2
3,342,646	+				+0.8
3,342,646	+				+1.0
3,342,646	+				-1.5
3,342,662	+				-0.0
3,342,663	-				+0.5
3,342,663	-				-1.2
3,342,663	-				+0.6
3,342,702	-		EFB2_03184	0.11	-1.7
3,342,785	+		EFB2_03184	0.19	+0.1
3,342,785	+		EFB2_03184	0.19	-3.7
3,342,785	+		EFB2_03184	0.19	-0.0
3,342,786	-		EFB2_03184	0.19	+1.5
3,342,786	-		EFB2_03184	0.19	-1.7
3,342,796	+		EFB2_03184	0.20	-0.4
3,342,833	+		EFB2_03184	0.24	-0.4
3,342,874	+		EFB2_03184	0.28	+0.1
3,342,874	+		EFB2_03184	0.28	-2.8
3,342,874	+		EFB2_03184	0.28	-1.9
3,342,874	+		EFB2_03184	0.28	-2.9
3,342,891	+		EFB2_03184	0.30	-1.9
3,342,892	-		EFB2_03184	0.30	+0.4
3,342,892	-		EFB2_03184	0.30	+0.1
3,342,892	-		EFB2_03184	0.30	+0.7
3,342,914	+		EFB2_03184	0.32	+0.2
3,342,914	+		EFB2_03184	0.32	+2.5
3,342,934	+		EFB2_03184	0.34	+1.1
3,342,934	+		EFB2_03184	0.34	-1.4
3,342,934	+		EFB2_03184	0.34	+0.3
3,342,934	+		EFB2_03184	0.34	-0.0
3,342,935	-		EFB2_03184	0.34	-1.9
3,342,935	-		EFB2_03184	0.34	+0.6
3,342,940	-		EFB2_03184	0.35	+1.2
3,342,940	-		EFB2_03184	0.35	-1.4
3,342,940	-		EFB2_03184	0.35	-0.9
3,342,945	+		EFB2_03184	0.35	+0.8
3,342,945	+		EFB2_03184	0.35	-2.1
3,342,946	-		EFB2_03184	0.35	+1.2
3,342,965	+		EFB2_03184	0.37	+0.2
3,342,965	+		EFB2_03184	0.37	-0.8
3,342,965	+		EFB2_03184	0.37	+0.0
3,342,965	+		EFB2_03184	0.37	+0.9
3,342,965	+		EFB2_03184	0.37	+0.1
3,342,965	+		EFB2_03184	0.37	+0.2
3,342,965	+		EFB2_03184	0.37	-0.7
3,342,965	+		EFB2_03184	0.37	+2.0
3,342,965	+		EFB2_03184	0.37	-1.4
3,342,965	+		EFB2_03184	0.37	+2.3
3,342,965	+		EFB2_03184	0.37	-0.6
3,342,966	-		EFB2_03184	0.37	+2.9
3,342,988	+		EFB2_03184	0.40	-1.2
3,342,988	+		EFB2_03184	0.40	-2.1
3,342,988	+		EFB2_03184	0.40	-0.5
3,342,988	+		EFB2_03184	0.40	+1.6
3,342,988	+		EFB2_03184	0.40	+0.0
3,342,988	+		EFB2_03184	0.40	+1.5
3,342,988	+		EFB2_03184	0.40	+0.9
3,342,988	+		EFB2_03184	0.40	-4.1
3,342,988	+		EFB2_03184	0.40	+0.9
3,342,988	+		EFB2_03184	0.40	+1.7
3,342,988	+		EFB2_03184	0.40	-0.4
3,342,988	+		EFB2_03184	0.40	+0.4
3,342,988	+		EFB2_03184	0.40	+0.8
3,342,988	+		EFB2_03184	0.40	-0.7
3,342,990	+		EFB2_03184	0.40	+0.6
3,342,990	+		EFB2_03184	0.40	+0.6
3,342,990	+		EFB2_03184	0.40	-0.2
3,342,990	+		EFB2_03184	0.40	+3.0
3,342,990	+		EFB2_03184	0.40	+2.3
3,342,990	+		EFB2_03184	0.40	+0.6
3,342,990	+		EFB2_03184	0.40	-0.5
3,342,990	+		EFB2_03184	0.40	+0.9
3,342,991	-		EFB2_03184	0.40	-2.7
3,342,991	-		EFB2_03184	0.40	-0.9
3,342,991	-		EFB2_03184	0.40	+0.8
3,342,991	-		EFB2_03184	0.40	-0.8
3,342,991	-		EFB2_03184	0.40	-2.5
3,342,991	-		EFB2_03184	0.40	-0.0
3,342,991	-		EFB2_03184	0.40	+0.3
3,343,082	+		EFB2_03184	0.49	+1.8
3,343,124	+		EFB2_03184	0.53	+0.3
3,343,124	+		EFB2_03184	0.53	+0.3
3,343,124	+		EFB2_03184	0.53	+1.6
3,343,124	+		EFB2_03184	0.53	-0.6
3,343,124	+		EFB2_03184	0.53	-0.6
3,343,124	+		EFB2_03184	0.53	+0.9
3,343,124	+		EFB2_03184	0.53	+1.3
3,343,124	+		EFB2_03184	0.53	-0.5
3,343,125	-		EFB2_03184	0.53	+0.5
3,343,125	-		EFB2_03184	0.53	-1.7
3,343,125	-		EFB2_03184	0.53	-2.1
3,343,148	+		EFB2_03184	0.56	+1.2
3,343,148	+		EFB2_03184	0.56	+0.3
3,343,148	+		EFB2_03184	0.56	+2.3
3,343,161	+		EFB2_03184	0.57	+1.1
3,343,161	+		EFB2_03184	0.57	-0.1
3,343,161	+		EFB2_03184	0.57	-1.2
3,343,161	+		EFB2_03184	0.57	-0.6
3,343,185	-		EFB2_03184	0.60	-0.9
3,343,261	+		EFB2_03184	0.67	+0.5
3,343,261	+		EFB2_03184	0.67	-2.6
3,343,262	-		EFB2_03184	0.67	+0.7
3,343,318	+		EFB2_03184	0.73	-1.3
3,343,318	+		EFB2_03184	0.73	+0.6
3,343,329	-		EFB2_03184	0.74	-1.2
3,343,352	+		EFB2_03184	0.76	-1.9
3,343,352	+		EFB2_03184	0.76	+0.5
3,343,352	+		EFB2_03184	0.76	-1.1
3,343,352	+		EFB2_03184	0.76	-1.1
3,343,352	+		EFB2_03184	0.76	-0.7
3,343,352	+		EFB2_03184	0.76	-2.6
3,343,352	+		EFB2_03184	0.76	-0.6
3,343,352	+		EFB2_03184	0.76	-2.3
3,343,352	+		EFB2_03184	0.76	-1.2
3,343,352	+		EFB2_03184	0.76	-1.7
3,343,352	+		EFB2_03184	0.76	-2.7
3,343,353	-		EFB2_03184	0.76	+2.7
3,343,353	-		EFB2_03184	0.76	+1.0
3,343,353	-		EFB2_03184	0.76	+0.3
3,343,356	+		EFB2_03184	0.77	+0.8
3,343,371	+		EFB2_03184	0.78	-0.3
3,343,404	+		EFB2_03184	0.82	-1.8
3,343,404	+		EFB2_03184	0.82	+2.4
3,343,405	-		EFB2_03184	0.82	-2.0
3,343,405	-		EFB2_03184	0.82	-3.2
3,343,435	+		EFB2_03184	0.85	+0.5
3,343,435	+		EFB2_03184	0.85	-1.4
3,343,435	+		EFB2_03184	0.85	-0.3
3,343,435	+		EFB2_03184	0.85	-2.5
3,343,435	+		EFB2_03184	0.85	-1.5
3,343,435	+		EFB2_03184	0.85	+1.8
3,343,435	+		EFB2_03184	0.85	-1.1
3,343,435	+		EFB2_03184	0.85	-2.6
3,343,436	-		EFB2_03184	0.85	-0.0
3,343,474	+		EFB2_03184	0.89	+0.5
3,343,474	+		EFB2_03184	0.89	+1.1
3,343,474	+		EFB2_03184	0.89	-0.1
3,343,474	+		EFB2_03184	0.89	+0.3
3,343,474	+		EFB2_03184	0.89	-0.8
3,343,474	+		EFB2_03184	0.89	-0.1
3,343,474	+		EFB2_03184	0.89	+0.2
3,343,474	+		EFB2_03184	0.89	+0.2
3,343,474	+		EFB2_03184	0.89	-1.3
3,343,474	+		EFB2_03184	0.89	+0.2
3,343,474	+		EFB2_03184	0.89	-1.2
3,343,474	+		EFB2_03184	0.89	-0.7
3,343,475	-		EFB2_03184	0.89	-1.8
3,343,551	-				-1.3
3,343,580	+				-1.0
3,343,580	+				+0.9
3,343,581	-				-0.9
3,343,584	+				+0.3
3,343,584	+				-2.0
3,343,584	+				-1.1
3,343,732	+				-0.8
3,343,732	+				+1.7
3,343,732	+				+2.7
3,343,732	+				-0.5
3,343,732	+				-0.0
3,343,754	+		EFB2_03185	0.10	+0.2
3,343,810	-		EFB2_03185	0.14	-1.5
3,343,810	-		EFB2_03185	0.14	-2.0
3,343,813	+		EFB2_03185	0.14	+0.1
3,343,813	+		EFB2_03185	0.14	+0.5
3,343,813	+		EFB2_03185	0.14	-0.6
3,343,813	+		EFB2_03185	0.14	+0.3
3,343,813	+		EFB2_03185	0.14	+1.0
3,343,813	+		EFB2_03185	0.14	+0.3
3,343,813	+		EFB2_03185	0.14	-1.1
3,343,813	+		EFB2_03185	0.14	+0.3
3,343,813	+		EFB2_03185	0.14	+2.3
3,343,813	+		EFB2_03185	0.14	+0.5
3,343,813	+		EFB2_03185	0.14	+0.2
3,343,813	+		EFB2_03185	0.14	-2.7
3,343,814	-		EFB2_03185	0.14	+0.0
3,343,814	-		EFB2_03185	0.14	+0.4
3,343,814	-		EFB2_03185	0.14	+1.5
3,343,814	-		EFB2_03185	0.14	+1.5
3,343,814	-		EFB2_03185	0.14	+0.3
3,343,814	-		EFB2_03185	0.14	+0.6
3,343,814	-		EFB2_03185	0.14	-0.4
3,343,847	+		EFB2_03185	0.16	+1.7
3,343,848	-		EFB2_03185	0.16	+0.7
3,343,905	+		EFB2_03185	0.19	+0.9
3,343,905	+		EFB2_03185	0.19	+0.8
3,343,905	+		EFB2_03185	0.19	-2.2
3,343,905	+		EFB2_03185	0.19	-0.9
3,343,906	-		EFB2_03185	0.19	+0.9
3,343,906	-		EFB2_03185	0.19	+1.1
3,343,906	-		EFB2_03185	0.19	-1.9
3,343,937	+		EFB2_03185	0.21	+1.3
3,343,937	+		EFB2_03185	0.21	-1.6
3,343,937	+		EFB2_03185	0.21	-1.8
3,343,937	+		EFB2_03185	0.21	-1.5
3,343,937	+		EFB2_03185	0.21	+1.5
3,343,937	+		EFB2_03185	0.21	+1.6
3,343,937	+		EFB2_03185	0.21	+0.2
3,343,937	+		EFB2_03185	0.21	+0.1
3,343,937	+		EFB2_03185	0.21	-0.3
3,343,937	+		EFB2_03185	0.21	+2.6
3,343,937	+		EFB2_03185	0.21	+0.3
3,343,937	+		EFB2_03185	0.21	+1.3
3,343,937	+		EFB2_03185	0.21	-0.7
3,343,937	+		EFB2_03185	0.21	-1.0
3,343,937	+		EFB2_03185	0.21	+0.4
3,343,937	+		EFB2_03185	0.21	-0.0
3,343,938	-		EFB2_03185	0.21	+0.7
3,343,938	-		EFB2_03185	0.21	-1.2
3,343,938	-		EFB2_03185	0.21	-2.1
3,343,938	-		EFB2_03185	0.21	+0.1
3,343,938	-		EFB2_03185	0.21	-0.3
3,343,938	-		EFB2_03185	0.21	-0.8
3,343,938	-		EFB2_03185	0.21	+1.2
3,343,938	-		EFB2_03185	0.21	-0.5
3,343,938	-		EFB2_03185	0.21	+0.6
3,343,938	-		EFB2_03185	0.21	-3.0
3,343,938	-		EFB2_03185	0.21	-2.1
3,343,938	-		EFB2_03185	0.21	+0.6
3,343,938	-		EFB2_03185	0.21	+0.6
3,343,938	-		EFB2_03185	0.21	+2.0
3,343,938	-		EFB2_03185	0.21	+0.6
3,343,938	-		EFB2_03185	0.21	-0.2
3,343,938	-		EFB2_03185	0.21	-0.3
3,343,938	-		EFB2_03185	0.21	+0.5
3,343,938	-		EFB2_03185	0.21	+0.3
3,343,938	-		EFB2_03185	0.21	+0.9
3,343,985	+		EFB2_03185	0.24	+0.5
3,343,986	-		EFB2_03185	0.24	+1.0
3,344,065	+		EFB2_03185	0.29	+0.6
3,344,065	+		EFB2_03185	0.29	+1.8
3,344,131	+		EFB2_03185	0.33	-0.0
3,344,222	+		EFB2_03185	0.39	+1.9
3,344,244	-		EFB2_03185	0.40	-3.1
3,344,278	+		EFB2_03185	0.42	-0.7
3,344,278	+		EFB2_03185	0.42	+1.9
3,344,278	+		EFB2_03185	0.42	-2.3
3,344,278	+		EFB2_03185	0.42	+0.9
3,344,278	+		EFB2_03185	0.42	+0.5
3,344,278	+		EFB2_03185	0.42	+0.4
3,344,278	+		EFB2_03185	0.42	-0.5
3,344,278	+		EFB2_03185	0.42	+0.4
3,344,278	+		EFB2_03185	0.42	-1.8
3,344,278	+		EFB2_03185	0.42	-0.7
3,344,278	+		EFB2_03185	0.42	-0.1
3,344,279	-		EFB2_03185	0.42	-0.7
3,344,279	-		EFB2_03185	0.42	+1.0
3,344,279	-		EFB2_03185	0.42	+2.6
3,344,279	-		EFB2_03185	0.42	+0.0
3,344,279	-		EFB2_03185	0.42	+0.3
3,344,279	-		EFB2_03185	0.42	+0.2
3,344,281	+		EFB2_03185	0.42	+0.0
3,344,282	-		EFB2_03185	0.42	+0.3
3,344,335	+		EFB2_03185	0.45	+0.2
3,344,335	+		EFB2_03185	0.45	-1.0
3,344,335	+		EFB2_03185	0.45	+0.8
3,344,335	+		EFB2_03185	0.45	+0.8
3,344,336	-		EFB2_03185	0.45	+0.7
3,344,336	-		EFB2_03185	0.45	+1.3
3,344,336	-		EFB2_03185	0.45	-2.2
3,344,336	-		EFB2_03185	0.45	-0.2
3,344,336	-		EFB2_03185	0.45	-3.1
3,344,393	-		EFB2_03185	0.49	-0.7
3,344,423	+		EFB2_03185	0.51	-1.3
3,344,423	+		EFB2_03185	0.51	+0.9
3,344,423	+		EFB2_03185	0.51	-1.8
3,344,423	+		EFB2_03185	0.51	-0.9
3,344,423	+		EFB2_03185	0.51	-1.8
3,344,424	-		EFB2_03185	0.51	+0.2
3,344,428	+		EFB2_03185	0.51	-1.7
3,344,428	+		EFB2_03185	0.51	-0.0
3,344,429	-		EFB2_03185	0.51	-1.7
3,344,506	-		EFB2_03185	0.56	+0.3
3,344,546	+		EFB2_03185	0.58	+4.0
3,344,547	-		EFB2_03185	0.58	-1.4
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