Strain Fitness in Escherichia fergusonii Becca around EFB2_02577

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
2,723,359	+		EFB2_02576	0.12	-0.4
2,723,385	+		EFB2_02576	0.14	-2.7
2,723,385	+		EFB2_02576	0.14	-0.4
2,723,385	+		EFB2_02576	0.14	+0.6
2,723,386	-		EFB2_02576	0.14	+2.4
2,723,386	-		EFB2_02576	0.14	+2.6
2,723,389	+		EFB2_02576	0.15	+0.0
2,723,389	+		EFB2_02576	0.15	-0.6
2,723,389	+		EFB2_02576	0.15	-0.2
2,723,389	+		EFB2_02576	0.15	+0.8
2,723,389	+		EFB2_02576	0.15	-2.6
2,723,389	+		EFB2_02576	0.15	+1.0
2,723,389	+		EFB2_02576	0.15	-0.4
2,723,389	+		EFB2_02576	0.15	-1.1
2,723,390	-		EFB2_02576	0.15	-0.0
2,723,449	+		EFB2_02576	0.21	+0.6
2,723,449	+		EFB2_02576	0.21	-2.0
2,723,450	-		EFB2_02576	0.21	+1.7
2,723,453	+		EFB2_02576	0.21	+0.5
2,723,453	+		EFB2_02576	0.21	+1.0
2,723,453	+		EFB2_02576	0.21	-2.1
2,723,453	+		EFB2_02576	0.21	+2.1
2,723,453	+		EFB2_02576	0.21	+1.1
2,723,453	+		EFB2_02576	0.21	+0.1
2,723,453	+		EFB2_02576	0.21	-3.0
2,723,453	+		EFB2_02576	0.21	+0.6
2,723,453	+		EFB2_02576	0.21	+0.1
2,723,453	+		EFB2_02576	0.21	-1.6
2,723,454	-		EFB2_02576	0.21	+0.9
2,723,454	-		EFB2_02576	0.21	+3.9
2,723,454	-		EFB2_02576	0.21	+0.3
2,723,454	-		EFB2_02576	0.21	+2.5
2,723,454	-		EFB2_02576	0.21	+0.4
2,723,454	-		EFB2_02576	0.21	-0.1
2,723,455	+		EFB2_02576	0.21	+1.7
2,723,455	+		EFB2_02576	0.21	-2.5
2,723,455	+		EFB2_02576	0.21	-1.4
2,723,456	-		EFB2_02576	0.22	-2.7
2,723,456	-		EFB2_02576	0.22	-1.5
2,723,456	-		EFB2_02576	0.22	-2.3
2,723,523	+		EFB2_02576	0.28	+0.9
2,723,523	+		EFB2_02576	0.28	-1.4
2,723,523	+		EFB2_02576	0.28	-1.1
2,723,524	-		EFB2_02576	0.28	+0.6
2,723,524	-		EFB2_02576	0.28	-0.8
2,723,524	-		EFB2_02576	0.28	-0.5
2,723,540	+		EFB2_02576	0.30	+1.6
2,723,540	+		EFB2_02576	0.30	+1.4
2,723,540	+		EFB2_02576	0.30	-3.3
2,723,541	-		EFB2_02576	0.30	-1.3
2,723,541	-		EFB2_02576	0.30	+2.0
2,723,541	-		EFB2_02576	0.30	+1.6
2,723,541	-		EFB2_02576	0.30	-1.1
2,723,575	+		EFB2_02576	0.34	-1.0
2,723,612	+		EFB2_02576	0.37	+2.3
2,723,612	+		EFB2_02576	0.37	+0.5
2,723,612	+		EFB2_02576	0.37	+1.2
2,723,633	-		EFB2_02576	0.39	+1.1
2,723,633	-		EFB2_02576	0.39	+2.3
2,723,633	-		EFB2_02576	0.39	+1.4
2,723,662	+		EFB2_02576	0.42	-1.7
2,723,662	+		EFB2_02576	0.42	+0.8
2,723,662	+		EFB2_02576	0.42	+0.1
2,723,662	+		EFB2_02576	0.42	-1.9
2,723,662	+		EFB2_02576	0.42	-2.9
2,723,663	-		EFB2_02576	0.42	-0.0
2,723,663	-		EFB2_02576	0.42	-1.8
2,723,665	+		EFB2_02576	0.43	-0.0
2,723,665	+		EFB2_02576	0.43	-0.7
2,723,665	+		EFB2_02576	0.43	-2.1
2,723,665	+		EFB2_02576	0.43	-1.1
2,723,665	+		EFB2_02576	0.43	-0.1
2,723,665	+		EFB2_02576	0.43	+0.0
2,723,665	+		EFB2_02576	0.43	-0.8
2,723,665	+		EFB2_02576	0.43	-3.0
2,723,665	+		EFB2_02576	0.43	+2.6
2,723,665	+		EFB2_02576	0.43	-2.2
2,723,665	+		EFB2_02576	0.43	+0.6
2,723,665	+		EFB2_02576	0.43	-2.3
2,723,665	+		EFB2_02576	0.43	-0.1
2,723,665	+		EFB2_02576	0.43	-0.4
2,723,665	+		EFB2_02576	0.43	+0.7
2,723,665	+		EFB2_02576	0.43	-0.4
2,723,665	+		EFB2_02576	0.43	-0.3
2,723,665	+		EFB2_02576	0.43	-1.4
2,723,665	+		EFB2_02576	0.43	+0.0
2,723,665	+		EFB2_02576	0.43	+1.0
2,723,665	+		EFB2_02576	0.43	-0.3
2,723,665	+		EFB2_02576	0.43	-0.3
2,723,665	+		EFB2_02576	0.43	-0.0
2,723,665	+		EFB2_02576	0.43	-4.0
2,723,665	+		EFB2_02576	0.43	+0.3
2,723,665	+		EFB2_02576	0.43	-1.1
2,723,665	+		EFB2_02576	0.43	+0.8
2,723,665	+		EFB2_02576	0.43	+0.7
2,723,665	+		EFB2_02576	0.43	+0.4
2,723,665	+		EFB2_02576	0.43	-2.0
2,723,665	+		EFB2_02576	0.43	-0.6
2,723,666	-		EFB2_02576	0.43	+0.2
2,723,666	-		EFB2_02576	0.43	+3.3
2,723,666	-		EFB2_02576	0.43	+0.2
2,723,666	-		EFB2_02576	0.43	+0.2
2,723,666	-		EFB2_02576	0.43	-1.3
2,723,666	-		EFB2_02576	0.43	-0.2
2,723,666	-		EFB2_02576	0.43	+2.3
2,723,666	-		EFB2_02576	0.43	-1.4
2,723,666	-		EFB2_02576	0.43	-0.4
2,723,666	-		EFB2_02576	0.43	-0.8
2,723,666	-		EFB2_02576	0.43	+1.7
2,723,666	-		EFB2_02576	0.43	+1.4
2,723,666	-		EFB2_02576	0.43	-0.4
2,723,666	-		EFB2_02576	0.43	+1.5
2,723,666	-		EFB2_02576	0.43	-0.4
2,723,666	-		EFB2_02576	0.43	+0.5
2,723,666	-		EFB2_02576	0.43	-2.0
2,723,666	-		EFB2_02576	0.43	+0.4
2,723,666	-		EFB2_02576	0.43	-0.3
2,723,666	-		EFB2_02576	0.43	+1.6
2,723,666	-		EFB2_02576	0.43	-0.6
2,723,666	-		EFB2_02576	0.43	+0.5
2,723,669	+		EFB2_02576	0.43	+1.7
2,723,669	+		EFB2_02576	0.43	-0.9
2,723,669	+		EFB2_02576	0.43	-2.1
2,723,669	+		EFB2_02576	0.43	-0.0
2,723,669	+		EFB2_02576	0.43	+1.5
2,723,669	+		EFB2_02576	0.43	+0.6
2,723,669	+		EFB2_02576	0.43	-0.9
2,723,669	+		EFB2_02576	0.43	+2.0
2,723,669	+		EFB2_02576	0.43	-0.9
2,723,669	+		EFB2_02576	0.43	+1.3
2,723,669	+		EFB2_02576	0.43	-1.4
2,723,669	+		EFB2_02576	0.43	+1.6
2,723,669	+		EFB2_02576	0.43	-0.1
2,723,669	+		EFB2_02576	0.43	+0.5
2,723,670	-		EFB2_02576	0.43	-0.3
2,723,670	-		EFB2_02576	0.43	-2.1
2,723,670	-		EFB2_02576	0.43	+0.2
2,723,670	-		EFB2_02576	0.43	-1.4
2,723,670	-		EFB2_02576	0.43	-0.0
2,723,670	-		EFB2_02576	0.43	-1.8
2,723,670	-		EFB2_02576	0.43	+0.4
2,723,670	-		EFB2_02576	0.43	-1.1
2,723,670	-		EFB2_02576	0.43	+1.6
2,723,670	-		EFB2_02576	0.43	-0.6
2,723,670	-		EFB2_02576	0.43	-0.8
2,723,670	-		EFB2_02576	0.43	+1.1
2,723,670	-		EFB2_02576	0.43	-2.9
2,723,670	-		EFB2_02576	0.43	+0.2
2,723,670	-		EFB2_02576	0.43	-1.1
2,723,670	-		EFB2_02576	0.43	+2.4
2,723,701	+		EFB2_02576	0.46	-2.5
2,723,702	-		EFB2_02576	0.46	+2.6
2,723,804	+		EFB2_02576	0.57	+0.0
2,723,804	+		EFB2_02576	0.57	+0.7
2,723,804	+		EFB2_02576	0.57	-0.0
2,723,804	+		EFB2_02576	0.57	+0.5
2,723,804	+		EFB2_02576	0.57	+3.0
2,723,804	+		EFB2_02576	0.57	-0.9
2,723,805	-		EFB2_02576	0.57	-1.8
2,723,805	-		EFB2_02576	0.57	+1.2
2,723,842	+		EFB2_02576	0.61	-0.8
2,723,842	+		EFB2_02576	0.61	+0.1
2,723,842	+		EFB2_02576	0.61	+0.6
2,723,842	+		EFB2_02576	0.61	-0.2
2,723,842	+		EFB2_02576	0.61	+0.3
2,723,843	-		EFB2_02576	0.61	+0.4
2,723,876	+		EFB2_02576	0.64	+0.3
2,723,876	+		EFB2_02576	0.64	+1.4
2,723,876	+		EFB2_02576	0.64	+0.6
2,723,876	+		EFB2_02576	0.64	+0.7
2,723,876	+		EFB2_02576	0.64	-0.9
2,723,877	-		EFB2_02576	0.64	-0.4
2,723,877	-		EFB2_02576	0.64	+0.8
2,723,877	-		EFB2_02576	0.64	-2.1
2,723,935	+		EFB2_02576	0.70	-1.1
2,723,935	+		EFB2_02576	0.70	+1.1
2,723,935	+		EFB2_02576	0.70	+0.7
2,723,936	-		EFB2_02576	0.70	+0.4
2,724,020	+		EFB2_02576	0.78	-3.4
2,724,020	+		EFB2_02576	0.78	+1.2
2,724,020	+		EFB2_02576	0.78	+1.8
2,724,020	+		EFB2_02576	0.78	+0.3
2,724,020	+		EFB2_02576	0.78	-0.4
2,724,020	+		EFB2_02576	0.78	-0.3
2,724,020	+		EFB2_02576	0.78	+1.1
2,724,021	-		EFB2_02576	0.79	-1.8
2,724,021	-		EFB2_02576	0.79	+0.0
2,724,052	+		EFB2_02576	0.82	-2.4
2,724,052	+		EFB2_02576	0.82	-0.8
2,724,052	+		EFB2_02576	0.82	-0.0
2,724,052	+		EFB2_02576	0.82	+0.4
2,724,052	+		EFB2_02576	0.82	-1.4
2,724,081	+		EFB2_02576	0.85	-0.1
2,724,081	+		EFB2_02576	0.85	+2.6
2,724,081	+		EFB2_02576	0.85	-2.7
2,724,081	+		EFB2_02576	0.85	-0.7
2,724,081	+		EFB2_02576	0.85	+0.7
2,724,081	+		EFB2_02576	0.85	+1.6
2,724,082	-		EFB2_02576	0.85	-2.1
2,724,160	+				+0.5
2,724,160	+				-1.0
2,724,160	+				+0.4
2,724,160	+				+1.9
2,724,161	-				-1.9
2,724,161	-				-1.9
2,724,172	+				-2.5
2,724,172	+				+0.3
2,724,172	+				+2.7
2,724,172	+				+0.3
2,724,172	+				+0.4
2,724,172	+				+2.8
2,724,172	+				-0.7
2,724,173	-				-0.3
2,724,173	-				+1.4
2,724,186	+				-0.7
2,724,230	+				-1.5
2,724,230	+				+1.1
2,724,231	-				+1.7
2,724,264	+				-0.5
2,724,264	+				-2.6
2,724,264	+				+0.2
2,724,265	-				+1.6
2,724,265	-				-0.2
2,724,265	-				+0.4
2,724,272	+				+3.0
2,724,272	+				-0.4
2,724,272	+				-2.6
2,724,297	+				-0.4
2,724,297	+				+3.6
2,724,297	+				+1.0
2,724,297	+				-2.3
2,724,298	-				-1.8
2,724,298	-				-1.4
2,724,298	-				-0.6
2,724,309	-				-0.8
2,724,309	-				-0.4
2,724,328	+				+2.6
2,724,328	+				-0.9
2,724,328	+				-1.0
2,724,328	+				-1.4
2,724,329	-				+0.1
2,724,329	-				+0.7
2,724,329	-				+0.4
2,724,329	-				-0.4
2,724,353	+				-0.4
2,724,371	+				-2.0
2,724,395	+		EFB2_02577	0.12	+0.0
2,724,395	+		EFB2_02577	0.12	+3.0
2,724,395	+		EFB2_02577	0.12	-0.3
2,724,395	+		EFB2_02577	0.12	+0.9
2,724,395	+		EFB2_02577	0.12	+0.1
2,724,395	+		EFB2_02577	0.12	+0.9
2,724,395	+		EFB2_02577	0.12	+2.9
2,724,395	+		EFB2_02577	0.12	-2.4
2,724,395	+		EFB2_02577	0.12	-0.4
2,724,395	+		EFB2_02577	0.12	-0.4
2,724,395	+		EFB2_02577	0.12	-0.6
2,724,396	-		EFB2_02577	0.13	-0.0
2,724,396	-		EFB2_02577	0.13	-0.1
2,724,396	-		EFB2_02577	0.13	-1.8
2,724,396	-		EFB2_02577	0.13	+1.0
2,724,396	-		EFB2_02577	0.13	-1.4
2,724,396	-		EFB2_02577	0.13	+0.5
2,724,396	-		EFB2_02577	0.13	-2.4
2,724,396	-		EFB2_02577	0.13	+3.7
2,724,396	-		EFB2_02577	0.13	-0.4
2,724,396	-		EFB2_02577	0.13	-0.8
2,724,396	-		EFB2_02577	0.13	-0.8
2,724,396	-		EFB2_02577	0.13	-2.0
2,724,399	+		EFB2_02577	0.13	+1.0
2,724,399	+		EFB2_02577	0.13	+2.0
2,724,399	+		EFB2_02577	0.13	-2.1
2,724,399	+		EFB2_02577	0.13	-0.6
2,724,400	-		EFB2_02577	0.13	-2.0
2,724,400	-		EFB2_02577	0.13	+1.3
2,724,400	-		EFB2_02577	0.13	+1.8
2,724,416	+		EFB2_02577	0.17	-0.6
2,724,417	-		EFB2_02577	0.17	+1.0
2,724,431	+		EFB2_02577	0.21	-1.0
2,724,431	+		EFB2_02577	0.21	+0.1
2,724,431	+		EFB2_02577	0.21	+1.5
2,724,431	+		EFB2_02577	0.21	-0.3
2,724,431	+		EFB2_02577	0.21	-1.0
2,724,431	+		EFB2_02577	0.21	-1.4
2,724,431	+		EFB2_02577	0.21	+3.5
2,724,431	+		EFB2_02577	0.21	+2.3
2,724,432	-		EFB2_02577	0.21	-1.5
2,724,432	-		EFB2_02577	0.21	+1.7
2,724,432	-		EFB2_02577	0.21	+0.5
2,724,461	+		EFB2_02577	0.28	-2.1
2,724,461	+		EFB2_02577	0.28	+3.1
2,724,461	+		EFB2_02577	0.28	-1.4
2,724,469	-		EFB2_02577	0.30	+1.0
2,724,552	+		EFB2_02577	0.49	+0.5
2,724,553	-		EFB2_02577	0.50	+0.6
2,724,573	+		EFB2_02577	0.54	+2.3
2,724,612	+		EFB2_02577	0.64	-2.7
2,724,613	-		EFB2_02577	0.64	+0.5
2,724,613	-		EFB2_02577	0.64	-0.5
2,724,613	-		EFB2_02577	0.64	-1.7
2,724,636	+		EFB2_02577	0.69	+3.3
2,724,636	+		EFB2_02577	0.69	+0.1
2,724,636	+		EFB2_02577	0.69	+1.0
2,724,636	+		EFB2_02577	0.69	-0.8
2,724,636	+		EFB2_02577	0.69	-1.4
2,724,637	-		EFB2_02577	0.70	+0.7
2,724,637	-		EFB2_02577	0.70	+0.8
2,724,734	+				+0.8
2,724,734	+				+0.4
2,724,734	+				-0.0
2,724,734	+				-2.9
2,724,734	+				-1.6
2,724,735	-				-0.4
2,724,735	-				-0.2
2,724,735	-				-2.4
2,724,735	-				-1.0
2,724,735	-				-1.1
2,724,739	+				-1.3
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