Strain Fitness in Escherichia fergusonii Becca around EFB2_01598

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
1,671,631	+		EFB2_01595	0.88	-1.7
1,671,631	+		EFB2_01595	0.88	+1.7
1,671,631	+		EFB2_01595	0.88	+0.5
1,671,631	+		EFB2_01595	0.88	+0.6
1,671,631	+		EFB2_01595	0.88	-0.5
1,671,632	-		EFB2_01595	0.88	+0.7
1,671,632	-		EFB2_01595	0.88	-1.5
1,671,632	-		EFB2_01595	0.88	-2.4
1,671,632	-		EFB2_01595	0.88	-1.5
1,671,632	-		EFB2_01595	0.88	-3.9
1,671,632	-		EFB2_01595	0.88	-1.4
1,671,632	-		EFB2_01595	0.88	-1.8
1,671,632	-		EFB2_01595	0.88	-0.6
1,671,672	+				+2.4
1,671,672	+				-1.9
1,671,673	-				-0.3
1,671,673	-				-0.0
1,671,673	-				+0.9
1,671,738	+				-0.9
1,671,762	-				+0.8
1,671,787	+				-0.9
1,671,787	+				-0.3
1,671,788	-				-1.0
1,671,788	-				+0.6
1,671,788	-				+1.2
1,671,788	-				+2.3
1,671,788	-				+0.0
1,671,791	+				-0.0
1,671,791	+				+2.3
1,671,792	-				-1.0
1,671,792	-				+2.0
1,671,792	-				-1.8
1,671,837	+				+0.7
1,671,838	-				-0.9
1,671,846	+				+0.5
1,671,847	-				-2.7
1,671,853	+				+0.4
1,671,931	+		EFB2_01596	0.12	+2.1
1,671,931	+		EFB2_01596	0.12	-0.3
1,671,932	-		EFB2_01596	0.12	-0.1
1,671,940	+		EFB2_01596	0.15	+0.2
1,671,940	+		EFB2_01596	0.15	+0.7
1,671,940	+		EFB2_01596	0.15	-0.6
1,671,941	-		EFB2_01596	0.16	+1.0
1,671,951	+		EFB2_01596	0.19	+0.1
1,671,951	+		EFB2_01596	0.19	+0.1
1,671,951	+		EFB2_01596	0.19	+0.2
1,671,951	+		EFB2_01596	0.19	+0.1
1,671,951	+		EFB2_01596	0.19	+0.7
1,671,951	+		EFB2_01596	0.19	+0.9
1,671,951	+		EFB2_01596	0.19	-0.5
1,671,951	+		EFB2_01596	0.19	-0.0
1,671,951	+		EFB2_01596	0.19	+1.1
1,671,951	+		EFB2_01596	0.19	-0.1
1,671,951	+		EFB2_01596	0.19	+1.5
1,671,951	+		EFB2_01596	0.19	-2.0
1,671,951	+		EFB2_01596	0.19	-2.1
1,671,951	+		EFB2_01596	0.19	+1.0
1,671,951	+		EFB2_01596	0.19	-0.6
1,671,951	+		EFB2_01596	0.19	+1.3
1,671,951	+		EFB2_01596	0.19	+2.3
1,671,951	+		EFB2_01596	0.19	-0.7
1,671,951	+		EFB2_01596	0.19	+0.4
1,671,951	+		EFB2_01596	0.19	+0.8
1,671,951	+		EFB2_01596	0.19	+2.1
1,671,951	+		EFB2_01596	0.19	-2.2
1,671,951	+		EFB2_01596	0.19	+0.7
1,671,951	+		EFB2_01596	0.19	-0.5
1,671,951	+		EFB2_01596	0.19	+2.3
1,671,951	+		EFB2_01596	0.19	-0.2
1,671,951	+		EFB2_01596	0.19	-0.9
1,671,951	+		EFB2_01596	0.19	+0.1
1,671,951	+		EFB2_01596	0.19	-0.6
1,671,951	+		EFB2_01596	0.19	+0.0
1,671,951	+		EFB2_01596	0.19	-0.9
1,671,951	+		EFB2_01596	0.19	-0.4
1,671,951	+		EFB2_01596	0.19	-1.1
1,671,951	+		EFB2_01596	0.19	-0.8
1,671,951	+		EFB2_01596	0.19	+0.4
1,671,951	+		EFB2_01596	0.19	+0.3
1,671,951	+		EFB2_01596	0.19	+1.5
1,671,951	+		EFB2_01596	0.19	+0.3
1,671,951	+		EFB2_01596	0.19	-2.1
1,671,951	+		EFB2_01596	0.19	+0.6
1,671,951	+		EFB2_01596	0.19	-1.2
1,671,951	+		EFB2_01596	0.19	-2.9
1,671,951	+		EFB2_01596	0.19	-1.0
1,671,951	+		EFB2_01596	0.19	-3.9
1,671,951	+		EFB2_01596	0.19	+1.0
1,671,951	+		EFB2_01596	0.19	+0.7
1,671,951	+		EFB2_01596	0.19	+0.2
1,671,951	+		EFB2_01596	0.19	+0.7
1,671,951	+		EFB2_01596	0.19	+0.6
1,671,951	+		EFB2_01596	0.19	-1.3
1,671,951	+		EFB2_01596	0.19	-0.9
1,671,951	+		EFB2_01596	0.19	-0.9
1,671,951	+		EFB2_01596	0.19	-0.6
1,671,951	+		EFB2_01596	0.19	-0.6
1,671,951	+		EFB2_01596	0.19	+0.2
1,671,952	-		EFB2_01596	0.20	+2.6
1,671,952	-		EFB2_01596	0.20	-2.5
1,671,952	-		EFB2_01596	0.20	+1.8
1,671,952	-		EFB2_01596	0.20	-1.5
1,671,952	-		EFB2_01596	0.20	+2.0
1,671,952	-		EFB2_01596	0.20	+3.3
1,671,952	-		EFB2_01596	0.20	-0.6
1,671,952	-		EFB2_01596	0.20	+1.5
1,671,952	-		EFB2_01596	0.20	-2.2
1,671,952	-		EFB2_01596	0.20	+0.5
1,671,952	-		EFB2_01596	0.20	-1.0
1,671,952	-		EFB2_01596	0.20	+5.0
1,671,952	-		EFB2_01596	0.20	+1.6
1,671,952	-		EFB2_01596	0.20	+1.5
1,671,952	-		EFB2_01596	0.20	+1.6
1,671,952	-		EFB2_01596	0.20	-2.1
1,671,952	-		EFB2_01596	0.20	+0.9
1,671,952	-		EFB2_01596	0.20	+0.1
1,671,952	-		EFB2_01596	0.20	-0.4
1,671,952	-		EFB2_01596	0.20	-0.2
1,671,952	-		EFB2_01596	0.20	-0.5
1,671,952	-		EFB2_01596	0.20	+2.0
1,671,952	-		EFB2_01596	0.20	-0.3
1,671,952	-		EFB2_01596	0.20	-1.8
1,671,952	-		EFB2_01596	0.20	-2.8
1,671,952	-		EFB2_01596	0.20	+1.0
1,671,952	-		EFB2_01596	0.20	+1.8
1,671,952	-		EFB2_01596	0.20	-2.9
1,671,952	-		EFB2_01596	0.20	+0.3
1,671,952	-		EFB2_01596	0.20	+0.3
1,671,952	-		EFB2_01596	0.20	-1.4
1,671,952	-		EFB2_01596	0.20	+1.5
1,671,952	-		EFB2_01596	0.20	-0.7
1,671,952	-		EFB2_01596	0.20	-2.0
1,671,952	-		EFB2_01596	0.20	-0.9
1,671,952	-		EFB2_01596	0.20	-2.9
1,671,952	-		EFB2_01596	0.20	-1.3
1,671,952	-		EFB2_01596	0.20	+0.6
1,671,952	-		EFB2_01596	0.20	+1.3
1,671,952	-		EFB2_01596	0.20	-0.6
1,671,952	-		EFB2_01596	0.20	-1.3
1,671,955	+		EFB2_01596	0.21	-1.1
1,671,955	+		EFB2_01596	0.21	+0.4
1,671,955	+		EFB2_01596	0.21	-3.4
1,671,955	+		EFB2_01596	0.21	-3.5
1,671,955	+		EFB2_01596	0.21	-2.0
1,671,955	+		EFB2_01596	0.21	+0.1
1,671,955	+		EFB2_01596	0.21	+1.9
1,671,955	+		EFB2_01596	0.21	+0.8
1,671,955	+		EFB2_01596	0.21	-1.3
1,671,956	-		EFB2_01596	0.21	+0.6
1,671,956	-		EFB2_01596	0.21	-2.4
1,671,956	-		EFB2_01596	0.21	-1.3
1,671,956	-		EFB2_01596	0.21	+0.9
1,671,956	-		EFB2_01596	0.21	+1.4
1,671,956	-		EFB2_01596	0.21	-1.2
1,671,956	-		EFB2_01596	0.21	-3.7
1,671,956	-		EFB2_01596	0.21	-1.9
1,671,956	-		EFB2_01596	0.21	-0.5
1,671,956	-		EFB2_01596	0.21	+0.5
1,671,956	-		EFB2_01596	0.21	+2.2
1,671,956	-		EFB2_01596	0.21	+0.7
1,671,956	-		EFB2_01596	0.21	-0.0
1,672,032	+		EFB2_01596	0.50	+0.7
1,672,032	+		EFB2_01596	0.50	+1.6
1,672,033	-		EFB2_01596	0.50	-2.5
1,672,033	-		EFB2_01596	0.50	-0.9
1,672,058	+		EFB2_01596	0.60	+1.6
1,672,058	+		EFB2_01596	0.60	+1.1
1,672,058	+		EFB2_01596	0.60	+0.9
1,672,058	+		EFB2_01596	0.60	+0.5
1,672,058	+		EFB2_01596	0.60	-0.4
1,672,059	-		EFB2_01596	0.60	-1.3
1,672,063	+		EFB2_01596	0.61	-0.6
1,672,063	+		EFB2_01596	0.61	+0.1
1,672,063	+		EFB2_01596	0.61	+2.3
1,672,063	+		EFB2_01596	0.61	+0.2
1,672,064	-		EFB2_01596	0.62	+0.3
1,672,064	-		EFB2_01596	0.62	-1.3
1,672,064	-		EFB2_01596	0.62	-0.5
1,672,064	-		EFB2_01596	0.62	-0.2
1,672,064	-		EFB2_01596	0.62	-1.9
1,672,064	-		EFB2_01596	0.62	-2.0
1,672,064	-		EFB2_01596	0.62	-0.9
1,672,066	+		EFB2_01596	0.63	+0.1
1,672,066	+		EFB2_01596	0.63	+0.8
1,672,066	+		EFB2_01596	0.63	+1.2
1,672,112	+		EFB2_01596	0.80	+0.8
1,672,112	+		EFB2_01596	0.80	+2.3
1,672,112	+		EFB2_01596	0.80	-0.3
1,672,112	+		EFB2_01596	0.80	-0.7
1,672,114	+		EFB2_01596	0.81	+1.5
1,672,115	-		EFB2_01596	0.81	-0.1
1,672,115	-		EFB2_01596	0.81	-0.1
1,672,115	-		EFB2_01596	0.81	+1.7
1,672,115	-		EFB2_01596	0.81	+1.5
1,672,141	+				+0.9
1,672,141	+				-0.9
1,672,141	+				-2.3
1,672,141	+				-3.0
1,672,142	-				-2.2
1,672,209	+		EFB2_01597	0.13	-3.1
1,672,209	+		EFB2_01597	0.13	+1.3
1,672,209	+		EFB2_01597	0.13	-1.6
1,672,209	+		EFB2_01597	0.13	+0.6
1,672,209	+		EFB2_01597	0.13	-3.0
1,672,209	+		EFB2_01597	0.13	+0.3
1,672,209	+		EFB2_01597	0.13	+2.8
1,672,210	-		EFB2_01597	0.13	+0.7
1,672,210	-		EFB2_01597	0.13	+1.3
1,672,210	-		EFB2_01597	0.13	+0.6
1,672,210	-		EFB2_01597	0.13	+1.0
1,672,212	+		EFB2_01597	0.14	+2.5
1,672,212	+		EFB2_01597	0.14	-1.9
1,672,213	-		EFB2_01597	0.14	+0.1
1,672,213	-		EFB2_01597	0.14	-2.4
1,672,213	-		EFB2_01597	0.14	+1.3
1,672,213	-		EFB2_01597	0.14	+0.4
1,672,213	-		EFB2_01597	0.14	+2.0
1,672,213	-		EFB2_01597	0.14	+0.6
1,672,219	+		EFB2_01597	0.16	+1.8
1,672,219	+		EFB2_01597	0.16	-0.3
1,672,219	+		EFB2_01597	0.16	+0.7
1,672,228	+		EFB2_01597	0.18	-0.5
1,672,267	+		EFB2_01597	0.28	-1.2
1,672,267	+		EFB2_01597	0.28	+1.1
1,672,267	+		EFB2_01597	0.28	+1.8
1,672,268	-		EFB2_01597	0.28	-1.4
1,672,268	-		EFB2_01597	0.28	+0.8
1,672,268	-		EFB2_01597	0.28	-1.0
1,672,268	-		EFB2_01597	0.28	+2.2
1,672,268	-		EFB2_01597	0.28	+0.2
1,672,268	-		EFB2_01597	0.28	+0.6
1,672,268	-		EFB2_01597	0.28	+1.2
1,672,268	-		EFB2_01597	0.28	-1.3
1,672,285	+		EFB2_01597	0.33	-1.3
1,672,286	-		EFB2_01597	0.33	-1.3
1,672,295	+		EFB2_01597	0.35	-2.9
1,672,295	+		EFB2_01597	0.35	-1.2
1,672,295	+		EFB2_01597	0.35	-0.9
1,672,295	+		EFB2_01597	0.35	+0.0
1,672,295	+		EFB2_01597	0.35	-0.0
1,672,295	+		EFB2_01597	0.35	-0.9
1,672,295	+		EFB2_01597	0.35	+1.9
1,672,295	+		EFB2_01597	0.35	-0.7
1,672,295	+		EFB2_01597	0.35	+0.8
1,672,295	+		EFB2_01597	0.35	+1.4
1,672,295	+		EFB2_01597	0.35	-2.4
1,672,295	+		EFB2_01597	0.35	-0.5
1,672,295	+		EFB2_01597	0.35	+1.1
1,672,295	+		EFB2_01597	0.35	-2.9
1,672,296	-		EFB2_01597	0.35	-1.6
1,672,296	-		EFB2_01597	0.35	+0.3
1,672,296	-		EFB2_01597	0.35	-1.2
1,672,296	-		EFB2_01597	0.35	-1.0
1,672,296	-		EFB2_01597	0.35	+0.9
1,672,296	-		EFB2_01597	0.35	-0.9
1,672,296	-		EFB2_01597	0.35	+0.0
1,672,296	-		EFB2_01597	0.35	-4.0
1,672,296	-		EFB2_01597	0.35	+0.3
1,672,296	-		EFB2_01597	0.35	-2.2
1,672,296	-		EFB2_01597	0.35	-2.4
1,672,296	-		EFB2_01597	0.35	-0.3
1,672,296	-		EFB2_01597	0.35	+0.1
1,672,296	-		EFB2_01597	0.35	+0.6
1,672,296	-		EFB2_01597	0.35	+1.0
1,672,296	-		EFB2_01597	0.35	+0.6
1,672,302	+		EFB2_01597	0.37	-0.2
1,672,303	-		EFB2_01597	0.37	+0.0
1,672,303	-		EFB2_01597	0.37	+0.1
1,672,303	-		EFB2_01597	0.37	+1.0
1,672,303	-		EFB2_01597	0.37	+0.3
1,672,303	-		EFB2_01597	0.37	-1.5
1,672,303	-		EFB2_01597	0.37	-1.2
1,672,316	+		EFB2_01597	0.41	-0.1
1,672,316	+		EFB2_01597	0.41	-1.5
1,672,316	+		EFB2_01597	0.41	-2.4
1,672,316	+		EFB2_01597	0.41	+0.8
1,672,316	+		EFB2_01597	0.41	-2.5
1,672,316	+		EFB2_01597	0.41	+0.5
1,672,317	-		EFB2_01597	0.41	-0.1
1,672,317	-		EFB2_01597	0.41	-0.7
1,672,317	-		EFB2_01597	0.41	+0.1
1,672,317	-		EFB2_01597	0.41	-1.9
1,672,317	-		EFB2_01597	0.41	+0.6
1,672,317	-		EFB2_01597	0.41	-2.6
1,672,317	-		EFB2_01597	0.41	-2.2
1,672,317	-		EFB2_01597	0.41	+1.6
1,672,317	-		EFB2_01597	0.41	-0.5
1,672,317	-		EFB2_01597	0.41	+2.2
1,672,327	+		EFB2_01597	0.43	+0.5
1,672,328	-		EFB2_01597	0.44	-0.2
1,672,338	+		EFB2_01597	0.46	+0.4
1,672,338	+		EFB2_01597	0.46	+0.2
1,672,338	+		EFB2_01597	0.46	-0.8
1,672,338	+		EFB2_01597	0.46	+0.8
1,672,338	+		EFB2_01597	0.46	+0.8
1,672,338	+		EFB2_01597	0.46	-2.2
1,672,338	+		EFB2_01597	0.46	+1.5
1,672,339	-		EFB2_01597	0.47	-0.0
1,672,339	-		EFB2_01597	0.47	-0.3
1,672,339	-		EFB2_01597	0.47	+0.1
1,672,339	-		EFB2_01597	0.47	-1.6
1,672,339	-		EFB2_01597	0.47	-1.4
1,672,339	-		EFB2_01597	0.47	+1.0
1,672,339	-		EFB2_01597	0.47	-1.0
1,672,342	+		EFB2_01597	0.47	+1.6
1,672,342	+		EFB2_01597	0.47	+0.6
1,672,342	+		EFB2_01597	0.47	-0.8
1,672,342	+		EFB2_01597	0.47	-0.1
1,672,342	+		EFB2_01597	0.47	+2.5
1,672,342	+		EFB2_01597	0.47	-1.2
1,672,342	+		EFB2_01597	0.47	-3.1
1,672,342	+		EFB2_01597	0.47	-1.8
1,672,342	+		EFB2_01597	0.47	-2.9
1,672,343	-		EFB2_01597	0.48	-0.5
1,672,343	-		EFB2_01597	0.48	-0.1
1,672,343	-		EFB2_01597	0.48	-3.2
1,672,343	-		EFB2_01597	0.48	-0.5
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