Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05031

Experiment: ABB 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05030 and BACOVA_05031 are separated by 65 nucleotidesBACOVA_05031 and BACOVA_05032 are separated by 264 nucleotidesBACOVA_05032 and BACOVA_05033 overlap by 4 nucleotides BACOVA_05030: BACOVA_05030 - response regulator receiver domain protein, at 499,443 to 503,729 _05030 BACOVA_05031: BACOVA_05031 - glycosyl hydrolase, family 88, at 503,795 to 504,934 _05031 BACOVA_05032: BACOVA_05032 - nucleotidyltransferase domain protein, at 505,199 to 505,522 _05032 BACOVA_05033: BACOVA_05033 - HEPN domain protein, at 505,519 to 505,920 _05033 Position (kb) 503 504 505Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 502.801 kb on + strand, within BACOVA_05030at 502.805 kb on + strand, within BACOVA_05030at 502.811 kb on - strand, within BACOVA_05030at 502.814 kb on + strand, within BACOVA_05030at 502.815 kb on - strand, within BACOVA_05030at 502.972 kb on + strand, within BACOVA_05030at 502.973 kb on - strand, within BACOVA_05030at 503.025 kb on - strand, within BACOVA_05030at 503.031 kb on + strand, within BACOVA_05030at 503.032 kb on - strand, within BACOVA_05030at 503.041 kb on + strand, within BACOVA_05030at 503.041 kb on + strand, within BACOVA_05030at 503.041 kb on + strand, within BACOVA_05030at 503.041 kb on + strand, within BACOVA_05030at 503.116 kb on + strand, within BACOVA_05030at 503.116 kb on + strand, within BACOVA_05030at 503.116 kb on + strand, within BACOVA_05030at 503.117 kb on - strand, within BACOVA_05030at 503.189 kb on + strand, within BACOVA_05030at 503.192 kb on + strand, within BACOVA_05030at 503.193 kb on - strand, within BACOVA_05030at 503.260 kb on - strand, within BACOVA_05030at 503.282 kb on + strand, within BACOVA_05030at 503.332 kb on + strandat 503.377 kb on + strandat 503.449 kb on - strandat 503.449 kb on - strandat 503.449 kb on - strandat 503.515 kb on + strandat 503.626 kb on - strandat 503.687 kb on - strandat 503.730 kb on + strandat 503.732 kb on + strandat 503.732 kb on + strandat 503.734 kb on + strandat 503.734 kb on + strandat 503.735 kb on - strandat 503.735 kb on - strandat 503.780 kb on - strandat 503.780 kb on - strandat 503.780 kb on - strandat 503.784 kb on - strandat 503.800 kb on + strandat 503.931 kb on + strand, within BACOVA_05031at 503.932 kb on - strand, within BACOVA_05031at 503.932 kb on - strand, within BACOVA_05031at 503.988 kb on - strand, within BACOVA_05031at 503.988 kb on - strand, within BACOVA_05031at 503.994 kb on - strand, within BACOVA_05031at 504.003 kb on + strand, within BACOVA_05031at 504.003 kb on + strand, within BACOVA_05031at 504.004 kb on - strand, within BACOVA_05031at 504.021 kb on - strand, within BACOVA_05031at 504.046 kb on + strand, within BACOVA_05031at 504.051 kb on + strand, within BACOVA_05031at 504.054 kb on - strand, within BACOVA_05031at 504.054 kb on - strand, within BACOVA_05031at 504.163 kb on + strand, within BACOVA_05031at 504.169 kb on + strand, within BACOVA_05031at 504.170 kb on - strand, within BACOVA_05031at 504.286 kb on + strand, within BACOVA_05031at 504.287 kb on - strand, within BACOVA_05031at 504.298 kb on - strand, within BACOVA_05031at 504.313 kb on + strand, within BACOVA_05031at 504.371 kb on - strand, within BACOVA_05031at 504.371 kb on - strand, within BACOVA_05031at 504.381 kb on + strand, within BACOVA_05031at 504.382 kb on - strand, within BACOVA_05031at 504.391 kb on + strand, within BACOVA_05031at 504.392 kb on - strand, within BACOVA_05031at 504.392 kb on - strand, within BACOVA_05031at 504.428 kb on - strand, within BACOVA_05031at 504.449 kb on + strand, within BACOVA_05031at 504.452 kb on - strand, within BACOVA_05031at 504.476 kb on + strand, within BACOVA_05031at 504.494 kb on + strand, within BACOVA_05031at 504.494 kb on + strand, within BACOVA_05031at 504.505 kb on + strand, within BACOVA_05031at 504.506 kb on - strand, within BACOVA_05031at 504.506 kb on - strand, within BACOVA_05031at 504.571 kb on - strand, within BACOVA_05031at 504.582 kb on + strand, within BACOVA_05031at 504.605 kb on - strand, within BACOVA_05031at 504.678 kb on + strand, within BACOVA_05031at 504.678 kb on + strand, within BACOVA_05031at 504.679 kb on - strand, within BACOVA_05031at 504.681 kb on + strand, within BACOVA_05031at 504.682 kb on - strand, within BACOVA_05031at 504.716 kb on + strand, within BACOVA_05031at 504.726 kb on + strand, within BACOVA_05031at 504.726 kb on + strand, within BACOVA_05031at 504.727 kb on - strand, within BACOVA_05031at 504.732 kb on - strand, within BACOVA_05031at 504.748 kb on + strand, within BACOVA_05031at 504.749 kb on - strand, within BACOVA_05031at 504.749 kb on - strand, within BACOVA_05031at 504.765 kb on - strand, within BACOVA_05031at 504.802 kb on - strand, within BACOVA_05031at 504.817 kb on - strand, within BACOVA_05031at 504.837 kb on - strandat 504.878 kb on + strandat 504.878 kb on + strandat 504.899 kb on + strandat 504.900 kb on - strandat 504.918 kb on - strandat 504.919 kb on + strandat 504.919 kb on + strandat 504.920 kb on - strandat 504.920 kb on - strandat 504.920 kb on - strandat 504.943 kb on - strandat 504.943 kb on - strandat 504.947 kb on + strandat 504.953 kb on - strandat 504.953 kb on - strandat 504.956 kb on - strandat 504.956 kb on - strandat 504.956 kb on - strandat 505.058 kb on + strandat 505.062 kb on - strandat 505.072 kb on - strandat 505.085 kb on - strandat 505.097 kb on + strandat 505.108 kb on + strandat 505.114 kb on + strandat 505.154 kb on - strandat 505.164 kb on - strandat 505.168 kb on + strandat 505.169 kb on - strandat 505.199 kb on - strandat 505.217 kb on - strandat 505.222 kb on - strandat 505.222 kb on - strandat 505.232 kb on - strand, within BACOVA_05032at 505.258 kb on - strand, within BACOVA_05032at 505.349 kb on - strand, within BACOVA_05032at 505.374 kb on - strand, within BACOVA_05032at 505.379 kb on - strand, within BACOVA_05032at 505.384 kb on - strand, within BACOVA_05032at 505.400 kb on - strand, within BACOVA_05032at 505.400 kb on - strand, within BACOVA_05032at 505.430 kb on - strand, within BACOVA_05032at 505.443 kb on - strand, within BACOVA_05032at 505.443 kb on - strand, within BACOVA_05032at 505.472 kb on - strand, within BACOVA_05032at 505.472 kb on - strand, within BACOVA_05032at 505.475 kb on - strand, within BACOVA_05032at 505.515 kb on + strandat 505.559 kb on + strandat 505.618 kb on + strand, within BACOVA_05033at 505.619 kb on - strand, within BACOVA_05033at 505.627 kb on - strand, within BACOVA_05033at 505.638 kb on + strand, within BACOVA_05033at 505.639 kb on - strand, within BACOVA_05033at 505.639 kb on - strand, within BACOVA_05033at 505.639 kb on - strand, within BACOVA_05033at 505.643 kb on - strand, within BACOVA_05033at 505.645 kb on + strand, within BACOVA_05033at 505.646 kb on - strand, within BACOVA_05033at 505.646 kb on - strand, within BACOVA_05033at 505.648 kb on + strand, within BACOVA_05033at 505.648 kb on + strand, within BACOVA_05033at 505.648 kb on + strand, within BACOVA_05033at 505.694 kb on + strand, within BACOVA_05033at 505.694 kb on + strand, within BACOVA_05033at 505.695 kb on - strand, within BACOVA_05033at 505.701 kb on + strand, within BACOVA_05033at 505.762 kb on - strand, within BACOVA_05033at 505.792 kb on - strand, within BACOVA_05033at 505.802 kb on + strand, within BACOVA_05033at 505.821 kb on + strand, within BACOVA_05033at 505.821 kb on + strand, within BACOVA_05033at 505.822 kb on - strand, within BACOVA_05033at 505.822 kb on - strand, within BACOVA_05033at 505.822 kb on - strand, within BACOVA_05033at 505.832 kb on - strand, within BACOVA_05033at 505.862 kb on + strand, within BACOVA_05033at 505.884 kb on + strandat 505.885 kb on - strandat 505.894 kb on - strandat 505.918 kb on + strandat 505.922 kb on + strandat 505.922 kb on + strandat 505.922 kb on + strandat 505.923 kb on - strandat 505.931 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ABB 1 x (C) complex media
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502,801 + BACOVA_05030 0.78 -0.7
502,805 + BACOVA_05030 0.78 +1.0
502,811 - BACOVA_05030 0.79 +1.3
502,814 + BACOVA_05030 0.79 -0.2
502,815 - BACOVA_05030 0.79 +0.2
502,972 + BACOVA_05030 0.82 +0.3
502,973 - BACOVA_05030 0.82 +0.2
503,025 - BACOVA_05030 0.84 -0.5
503,031 + BACOVA_05030 0.84 -0.3
503,032 - BACOVA_05030 0.84 -1.2
503,041 + BACOVA_05030 0.84 -1.1
503,041 + BACOVA_05030 0.84 +0.4
503,041 + BACOVA_05030 0.84 +2.1
503,041 + BACOVA_05030 0.84 +0.5
503,116 + BACOVA_05030 0.86 -0.7
503,116 + BACOVA_05030 0.86 -0.5
503,116 + BACOVA_05030 0.86 -0.6
503,117 - BACOVA_05030 0.86 +0.5
503,189 + BACOVA_05030 0.87 -0.3
503,192 + BACOVA_05030 0.87 -1.0
503,193 - BACOVA_05030 0.87 -0.7
503,260 - BACOVA_05030 0.89 +0.3
503,282 + BACOVA_05030 0.90 +0.8
503,332 + +0.6
503,377 + -2.6
503,449 - +0.2
503,449 - +0.7
503,449 - -0.8
503,515 + -0.1
503,626 - +0.5
503,687 - +0.3
503,730 + -0.2
503,732 + -0.5
503,732 + -1.0
503,734 + -0.7
503,734 + +0.3
503,735 - +1.1
503,735 - +1.1
503,780 - +0.1
503,780 - -1.0
503,780 - +0.9
503,784 - -0.1
503,800 + +0.6
503,931 + BACOVA_05031 0.12 -0.6
503,932 - BACOVA_05031 0.12 -0.0
503,932 - BACOVA_05031 0.12 +0.1
503,988 - BACOVA_05031 0.17 -1.2
503,988 - BACOVA_05031 0.17 -0.4
503,994 - BACOVA_05031 0.17 +1.0
504,003 + BACOVA_05031 0.18 -0.7
504,003 + BACOVA_05031 0.18 -0.2
504,004 - BACOVA_05031 0.18 -0.1
504,021 - BACOVA_05031 0.20 +1.7
504,046 + BACOVA_05031 0.22 -0.1
504,051 + BACOVA_05031 0.22 +0.4
504,054 - BACOVA_05031 0.23 -0.0
504,054 - BACOVA_05031 0.23 -0.5
504,163 + BACOVA_05031 0.32 -0.3
504,169 + BACOVA_05031 0.33 -0.5
504,170 - BACOVA_05031 0.33 +0.7
504,286 + BACOVA_05031 0.43 +0.9
504,287 - BACOVA_05031 0.43 -0.7
504,298 - BACOVA_05031 0.44 -1.3
504,313 + BACOVA_05031 0.45 +0.8
504,371 - BACOVA_05031 0.51 +0.7
504,371 - BACOVA_05031 0.51 +1.1
504,381 + BACOVA_05031 0.51 -0.3
504,382 - BACOVA_05031 0.51 -1.4
504,391 + BACOVA_05031 0.52 -0.2
504,392 - BACOVA_05031 0.52 +0.6
504,392 - BACOVA_05031 0.52 -0.4
504,428 - BACOVA_05031 0.56 -0.1
504,449 + BACOVA_05031 0.57 -0.6
504,452 - BACOVA_05031 0.58 -0.1
504,476 + BACOVA_05031 0.60 -0.3
504,494 + BACOVA_05031 0.61 +0.4
504,494 + BACOVA_05031 0.61 +0.9
504,505 + BACOVA_05031 0.62 +0.1
504,506 - BACOVA_05031 0.62 -1.5
504,506 - BACOVA_05031 0.62 +0.5
504,571 - BACOVA_05031 0.68 +0.5
504,582 + BACOVA_05031 0.69 +0.7
504,605 - BACOVA_05031 0.71 -0.4
504,678 + BACOVA_05031 0.77 -1.3
504,678 + BACOVA_05031 0.77 -0.3
504,679 - BACOVA_05031 0.78 +0.2
504,681 + BACOVA_05031 0.78 -0.2
504,682 - BACOVA_05031 0.78 -0.4
504,716 + BACOVA_05031 0.81 -0.2
504,726 + BACOVA_05031 0.82 -0.4
504,726 + BACOVA_05031 0.82 -1.6
504,727 - BACOVA_05031 0.82 +0.7
504,732 - BACOVA_05031 0.82 +1.5
504,748 + BACOVA_05031 0.84 +0.1
504,749 - BACOVA_05031 0.84 +0.3
504,749 - BACOVA_05031 0.84 -1.0
504,765 - BACOVA_05031 0.85 -1.9
504,802 - BACOVA_05031 0.88 +0.4
504,817 - BACOVA_05031 0.90 +0.4
504,837 - -1.1
504,878 + -1.9
504,878 + +0.1
504,899 + -1.9
504,900 - -0.6
504,918 - +0.8
504,919 + +1.2
504,919 + +0.6
504,920 - -1.1
504,920 - +0.3
504,920 - -0.9
504,943 - -2.7
504,943 - +0.1
504,947 + +0.1
504,953 - +1.1
504,953 - +0.4
504,956 - +0.9
504,956 - -0.3
504,956 - +0.6
505,058 + -0.3
505,062 - +0.2
505,072 - +0.1
505,085 - -0.8
505,097 + -0.0
505,108 + +0.3
505,114 + +0.1
505,154 - -0.6
505,164 - +0.1
505,168 + -1.8
505,169 - -0.0
505,199 - -2.4
505,217 - +0.1
505,222 - -0.9
505,222 - +1.5
505,232 - BACOVA_05032 0.10 -1.3
505,258 - BACOVA_05032 0.18 -0.7
505,349 - BACOVA_05032 0.46 -0.0
505,374 - BACOVA_05032 0.54 +0.5
505,379 - BACOVA_05032 0.56 +0.1
505,384 - BACOVA_05032 0.57 +0.0
505,400 - BACOVA_05032 0.62 -0.9
505,400 - BACOVA_05032 0.62 +0.1
505,430 - BACOVA_05032 0.71 +0.9
505,443 - BACOVA_05032 0.75 +0.0
505,443 - BACOVA_05032 0.75 -0.8
505,472 - BACOVA_05032 0.84 +0.2
505,472 - BACOVA_05032 0.84 -1.2
505,475 - BACOVA_05032 0.85 +0.6
505,515 + -0.3
505,559 + -0.2
505,618 + BACOVA_05033 0.25 -0.8
505,619 - BACOVA_05033 0.25 -0.0
505,627 - BACOVA_05033 0.27 +0.6
505,638 + BACOVA_05033 0.30 -0.6
505,639 - BACOVA_05033 0.30 -0.0
505,639 - BACOVA_05033 0.30 +0.5
505,639 - BACOVA_05033 0.30 -0.1
505,643 - BACOVA_05033 0.31 +0.1
505,645 + BACOVA_05033 0.31 +0.3
505,646 - BACOVA_05033 0.32 +0.3
505,646 - BACOVA_05033 0.32 -2.9
505,648 + BACOVA_05033 0.32 +0.4
505,648 + BACOVA_05033 0.32 -0.4
505,648 + BACOVA_05033 0.32 +0.4
505,694 + BACOVA_05033 0.44 +0.9
505,694 + BACOVA_05033 0.44 -0.1
505,695 - BACOVA_05033 0.44 -2.0
505,701 + BACOVA_05033 0.45 +0.5
505,762 - BACOVA_05033 0.60 +0.7
505,792 - BACOVA_05033 0.68 -1.6
505,802 + BACOVA_05033 0.70 +0.7
505,821 + BACOVA_05033 0.75 -0.1
505,821 + BACOVA_05033 0.75 +0.1
505,822 - BACOVA_05033 0.75 +0.3
505,822 - BACOVA_05033 0.75 +0.7
505,822 - BACOVA_05033 0.75 +0.4
505,832 - BACOVA_05033 0.78 -0.2
505,862 + BACOVA_05033 0.85 +0.1
505,884 + -0.5
505,885 - +0.9
505,894 - -2.5
505,918 + -0.2
505,922 + -0.5
505,922 + -0.8
505,922 + +0.7
505,923 - +0.4
505,931 - -1.2

Or see this region's nucleotide sequence