Experiment: ABB 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04957 and BACOVA_04958 are separated by 503 nucleotides BACOVA_04958 and BACOVA_04959 are separated by 128 nucleotides BACOVA_04959 and BACOVA_04960 overlap by 8 nucleotides
BACOVA_04957: BACOVA_04957 - TonB-linked outer membrane protein, SusC/RagA family, at 390,702 to 393,833
_04957
BACOVA_04958: BACOVA_04958 - site-specific recombinase, phage integrase family, at 394,337 to 395,650
_04958
BACOVA_04959: BACOVA_04959 - hypothetical protein, at 395,779 to 395,898
_04959
BACOVA_04960: BACOVA_04960 - hypothetical protein, at 395,891 to 396,928
_04960
Position (kb) 394
395
396 Strain fitness (log2 ratio) -2
-1
0
1 at 393.338 kb on + strand, within BACOVA_04957 at 393.339 kb on - strand, within BACOVA_04957 at 393.339 kb on - strand, within BACOVA_04957 at 393.339 kb on - strand, within BACOVA_04957 at 393.339 kb on - strand, within BACOVA_04957 at 393.345 kb on + strand, within BACOVA_04957 at 393.345 kb on + strand, within BACOVA_04957 at 393.345 kb on + strand, within BACOVA_04957 at 393.468 kb on + strand, within BACOVA_04957 at 393.477 kb on + strand, within BACOVA_04957 at 393.477 kb on + strand, within BACOVA_04957 at 393.478 kb on - strand, within BACOVA_04957 at 393.488 kb on - strand, within BACOVA_04957 at 393.518 kb on + strand, within BACOVA_04957 at 393.527 kb on + strand at 393.564 kb on + strand at 393.564 kb on + strand at 393.565 kb on - strand at 393.568 kb on + strand at 393.568 kb on + strand at 393.568 kb on + strand at 393.568 kb on + strand at 393.568 kb on + strand at 393.568 kb on + strand at 393.569 kb on - strand at 393.585 kb on - strand at 393.625 kb on - strand at 393.632 kb on + strand at 393.645 kb on - strand at 393.657 kb on - strand at 393.734 kb on - strand at 393.744 kb on + strand at 393.788 kb on + strand at 393.795 kb on - strand at 393.795 kb on - strand at 393.795 kb on - strand at 393.797 kb on - strand at 393.797 kb on - strand at 393.802 kb on + strand at 393.843 kb on - strand at 393.846 kb on - strand at 393.850 kb on + strand at 393.852 kb on + strand at 393.853 kb on - strand at 393.865 kb on - strand at 393.866 kb on + strand at 393.867 kb on - strand at 393.875 kb on + strand at 393.875 kb on + strand at 393.925 kb on + strand at 393.954 kb on + strand at 393.965 kb on - strand at 393.983 kb on - strand at 393.995 kb on + strand at 394.000 kb on - strand at 394.009 kb on - strand at 394.009 kb on - strand at 394.024 kb on - strand at 394.034 kb on + strand at 394.080 kb on + strand at 394.080 kb on + strand at 394.118 kb on + strand at 394.118 kb on + strand at 394.118 kb on + strand at 394.119 kb on - strand at 394.131 kb on - strand at 394.139 kb on + strand at 394.144 kb on - strand at 394.146 kb on + strand at 394.184 kb on + strand at 394.186 kb on + strand at 394.186 kb on + strand at 394.187 kb on - strand at 394.187 kb on - strand at 394.190 kb on + strand at 394.190 kb on + strand at 394.208 kb on + strand at 394.208 kb on + strand at 394.208 kb on + strand at 394.208 kb on + strand at 394.228 kb on + strand at 394.228 kb on + strand at 394.228 kb on + strand at 394.229 kb on - strand at 394.230 kb on + strand at 394.235 kb on + strand at 394.236 kb on - strand at 394.250 kb on + strand at 394.250 kb on + strand at 394.251 kb on - strand at 394.253 kb on - strand at 394.333 kb on + strand at 394.333 kb on + strand at 394.333 kb on + strand at 394.333 kb on + strand at 394.334 kb on - strand at 394.334 kb on - strand at 394.335 kb on + strand at 394.338 kb on + strand at 394.341 kb on - strand at 394.355 kb on + strand at 394.391 kb on - strand at 394.396 kb on + strand at 394.399 kb on + strand at 394.400 kb on - strand at 394.401 kb on + strand at 394.402 kb on - strand at 394.406 kb on - strand at 394.411 kb on + strand at 394.411 kb on + strand at 394.446 kb on + strand at 394.447 kb on + strand at 394.447 kb on - strand at 394.479 kb on + strand, within BACOVA_04958 at 394.515 kb on + strand, within BACOVA_04958 at 394.516 kb on - strand, within BACOVA_04958 at 394.516 kb on - strand, within BACOVA_04958 at 394.516 kb on - strand, within BACOVA_04958 at 394.551 kb on - strand, within BACOVA_04958 at 394.556 kb on - strand, within BACOVA_04958 at 394.559 kb on + strand, within BACOVA_04958 at 394.559 kb on + strand, within BACOVA_04958 at 394.560 kb on - strand, within BACOVA_04958 at 394.560 kb on - strand, within BACOVA_04958 at 394.560 kb on - strand, within BACOVA_04958 at 394.560 kb on - strand, within BACOVA_04958 at 394.560 kb on - strand, within BACOVA_04958 at 394.560 kb on - strand, within BACOVA_04958 at 394.560 kb on - strand, within BACOVA_04958 at 394.561 kb on + strand, within BACOVA_04958 at 394.579 kb on + strand, within BACOVA_04958 at 394.579 kb on + strand, within BACOVA_04958 at 394.583 kb on + strand, within BACOVA_04958 at 394.584 kb on - strand, within BACOVA_04958 at 394.591 kb on + strand, within BACOVA_04958 at 394.592 kb on - strand, within BACOVA_04958 at 394.603 kb on - strand, within BACOVA_04958 at 394.603 kb on - strand, within BACOVA_04958 at 394.636 kb on + strand, within BACOVA_04958 at 394.637 kb on - strand, within BACOVA_04958 at 394.638 kb on + strand, within BACOVA_04958 at 394.638 kb on + strand, within BACOVA_04958 at 394.646 kb on + strand, within BACOVA_04958 at 394.705 kb on + strand, within BACOVA_04958 at 394.706 kb on - strand, within BACOVA_04958 at 394.706 kb on - strand, within BACOVA_04958 at 394.708 kb on + strand, within BACOVA_04958 at 394.709 kb on - strand, within BACOVA_04958 at 394.728 kb on + strand, within BACOVA_04958 at 394.728 kb on + strand, within BACOVA_04958 at 394.729 kb on - strand, within BACOVA_04958 at 394.745 kb on - strand, within BACOVA_04958 at 394.760 kb on + strand, within BACOVA_04958 at 394.760 kb on + strand, within BACOVA_04958 at 394.760 kb on + strand, within BACOVA_04958 at 394.761 kb on - strand, within BACOVA_04958 at 394.763 kb on + strand, within BACOVA_04958 at 394.795 kb on - strand, within BACOVA_04958 at 394.801 kb on + strand, within BACOVA_04958 at 394.802 kb on - strand, within BACOVA_04958 at 394.802 kb on - strand, within BACOVA_04958 at 394.807 kb on + strand, within BACOVA_04958 at 394.903 kb on + strand, within BACOVA_04958 at 394.945 kb on - strand, within BACOVA_04958 at 394.949 kb on + strand, within BACOVA_04958 at 394.949 kb on + strand, within BACOVA_04958 at 394.953 kb on + strand, within BACOVA_04958 at 394.953 kb on + strand, within BACOVA_04958 at 394.954 kb on - strand, within BACOVA_04958 at 394.954 kb on - strand, within BACOVA_04958 at 394.963 kb on + strand, within BACOVA_04958 at 394.971 kb on + strand, within BACOVA_04958 at 394.976 kb on + strand, within BACOVA_04958 at 394.976 kb on + strand, within BACOVA_04958 at 394.989 kb on - strand, within BACOVA_04958 at 395.011 kb on + strand, within BACOVA_04958 at 395.017 kb on + strand, within BACOVA_04958 at 395.017 kb on + strand, within BACOVA_04958 at 395.063 kb on - strand, within BACOVA_04958 at 395.066 kb on + strand, within BACOVA_04958 at 395.066 kb on + strand, within BACOVA_04958 at 395.066 kb on + strand, within BACOVA_04958 at 395.067 kb on - strand, within BACOVA_04958 at 395.067 kb on - strand, within BACOVA_04958 at 395.136 kb on + strand, within BACOVA_04958 at 395.184 kb on + strand, within BACOVA_04958 at 395.184 kb on + strand, within BACOVA_04958 at 395.184 kb on + strand, within BACOVA_04958 at 395.185 kb on - strand, within BACOVA_04958 at 395.210 kb on + strand, within BACOVA_04958 at 395.236 kb on + strand, within BACOVA_04958 at 395.248 kb on + strand, within BACOVA_04958 at 395.315 kb on + strand, within BACOVA_04958 at 395.414 kb on + strand, within BACOVA_04958 at 395.416 kb on + strand, within BACOVA_04958 at 395.416 kb on + strand, within BACOVA_04958 at 395.416 kb on + strand, within BACOVA_04958 at 395.417 kb on - strand, within BACOVA_04958 at 395.417 kb on - strand, within BACOVA_04958 at 395.417 kb on - strand, within BACOVA_04958 at 395.417 kb on - strand, within BACOVA_04958 at 395.417 kb on - strand, within BACOVA_04958 at 395.441 kb on + strand, within BACOVA_04958 at 395.453 kb on + strand, within BACOVA_04958 at 395.530 kb on + strand at 395.555 kb on - strand at 395.560 kb on - strand at 395.577 kb on + strand at 395.577 kb on + strand at 395.672 kb on + strand at 395.681 kb on + strand at 395.690 kb on - strand at 395.774 kb on - strand at 395.778 kb on - strand at 395.778 kb on - strand at 395.778 kb on - strand at 395.778 kb on - strand at 395.814 kb on + strand, within BACOVA_04959 at 395.815 kb on - strand, within BACOVA_04959 at 395.896 kb on + strand at 395.928 kb on - strand at 395.958 kb on + strand at 395.959 kb on - strand at 395.959 kb on - strand at 395.978 kb on - strand at 395.993 kb on - strand at 396.039 kb on + strand, within BACOVA_04960 at 396.043 kb on - strand, within BACOVA_04960 at 396.043 kb on - strand, within BACOVA_04960 at 396.070 kb on + strand, within BACOVA_04960 at 396.070 kb on + strand, within BACOVA_04960 at 396.210 kb on + strand, within BACOVA_04960 at 396.213 kb on + strand, within BACOVA_04960 at 396.214 kb on - strand, within BACOVA_04960 at 396.214 kb on - strand, within BACOVA_04960 at 396.228 kb on - strand, within BACOVA_04960 at 396.285 kb on + strand, within BACOVA_04960 at 396.286 kb on - strand, within BACOVA_04960 at 396.286 kb on - strand, within BACOVA_04960 at 396.286 kb on - strand, within BACOVA_04960 at 396.295 kb on + strand, within BACOVA_04960 at 396.296 kb on - strand, within BACOVA_04960 at 396.302 kb on - strand, within BACOVA_04960 at 396.367 kb on + strand, within BACOVA_04960 at 396.368 kb on - strand, within BACOVA_04960 at 396.393 kb on + strand, within BACOVA_04960 at 396.464 kb on - strand, within BACOVA_04960 at 396.479 kb on - strand, within BACOVA_04960 at 396.487 kb on + strand, within BACOVA_04960 at 396.511 kb on + strand, within BACOVA_04960 at 396.596 kb on + strand, within BACOVA_04960 at 396.603 kb on + strand, within BACOVA_04960 at 396.603 kb on + strand, within BACOVA_04960 at 396.604 kb on - strand, within BACOVA_04960 at 396.642 kb on + strand, within BACOVA_04960 at 396.643 kb on - strand, within BACOVA_04960 at 396.647 kb on - strand, within BACOVA_04960 at 396.647 kb on - strand, within BACOVA_04960
Per-strain Table
Position Strand Gene LocusTag Fraction ABB 1 x (C) complex media remove 393,338 + BACOVA_04957 0.84 -0.0 393,339 - BACOVA_04957 0.84 -0.1 393,339 - BACOVA_04957 0.84 +0.7 393,339 - BACOVA_04957 0.84 +0.6 393,339 - BACOVA_04957 0.84 +0.6 393,345 + BACOVA_04957 0.84 -0.8 393,345 + BACOVA_04957 0.84 -0.5 393,345 + BACOVA_04957 0.84 -0.1 393,468 + BACOVA_04957 0.88 +0.3 393,477 + BACOVA_04957 0.89 -1.0 393,477 + BACOVA_04957 0.89 +0.5 393,478 - BACOVA_04957 0.89 +1.0 393,488 - BACOVA_04957 0.89 +0.1 393,518 + BACOVA_04957 0.90 -0.3 393,527 + -0.0 393,564 + -0.1 393,564 + +0.3 393,565 - +0.5 393,568 + +0.7 393,568 + +0.2 393,568 + -0.0 393,568 + +0.2 393,568 + -0.1 393,568 + +0.3 393,569 - +0.0 393,585 - +0.7 393,625 - +0.1 393,632 + -0.2 393,645 - -0.8 393,657 - -1.1 393,734 - +0.8 393,744 + -0.3 393,788 + -0.6 393,795 - -1.5 393,795 - -0.1 393,795 - +0.2 393,797 - -1.3 393,797 - +0.0 393,802 + -0.1 393,843 - -0.8 393,846 - -0.3 393,850 + +0.4 393,852 + +1.0 393,853 - +1.2 393,865 - -0.1 393,866 + -0.0 393,867 - +0.2 393,875 + +0.1 393,875 + -0.5 393,925 + +0.4 393,954 + -0.7 393,965 - -0.8 393,983 - +0.2 393,995 + -1.1 394,000 - +0.2 394,009 - +0.2 394,009 - -0.4 394,024 - +0.3 394,034 + -0.1 394,080 + -0.6 394,080 + -1.2 394,118 + +0.4 394,118 + -0.0 394,118 + -0.1 394,119 - -0.4 394,131 - +0.4 394,139 + -0.6 394,144 - -0.1 394,146 + +0.4 394,184 + +0.7 394,186 + +0.1 394,186 + +1.3 394,187 - -0.3 394,187 - -1.0 394,190 + -0.3 394,190 + -0.7 394,208 + -0.5 394,208 + +0.2 394,208 + -0.6 394,208 + -0.1 394,228 + +0.9 394,228 + -1.4 394,228 + -0.2 394,229 - -1.4 394,230 + +0.1 394,235 + +0.0 394,236 - -0.5 394,250 + +0.3 394,250 + -0.1 394,251 - -0.8 394,253 - -0.7 394,333 + -0.2 394,333 + -0.5 394,333 + -1.2 394,333 + -0.5 394,334 - -0.7 394,334 - -0.6 394,335 + +0.0 394,338 + -1.3 394,341 - -0.0 394,355 + -0.5 394,391 - -1.1 394,396 + -0.9 394,399 + +0.9 394,400 - -1.3 394,401 + +0.3 394,402 - -0.3 394,406 - +0.0 394,411 + -1.7 394,411 + +0.5 394,446 + +0.3 394,447 + +0.4 394,447 - +0.1 394,479 + BACOVA_04958 0.11 +0.3 394,515 + BACOVA_04958 0.14 +0.3 394,516 - BACOVA_04958 0.14 -0.9 394,516 - BACOVA_04958 0.14 -0.7 394,516 - BACOVA_04958 0.14 -0.0 394,551 - BACOVA_04958 0.16 -0.7 394,556 - BACOVA_04958 0.17 -1.5 394,559 + BACOVA_04958 0.17 -0.7 394,559 + BACOVA_04958 0.17 -0.5 394,560 - BACOVA_04958 0.17 -1.3 394,560 - BACOVA_04958 0.17 -0.6 394,560 - BACOVA_04958 0.17 -0.2 394,560 - BACOVA_04958 0.17 -0.9 394,560 - BACOVA_04958 0.17 +1.6 394,560 - BACOVA_04958 0.17 +0.9 394,560 - BACOVA_04958 0.17 +0.4 394,561 + BACOVA_04958 0.17 -0.4 394,579 + BACOVA_04958 0.18 +0.3 394,579 + BACOVA_04958 0.18 +0.0 394,583 + BACOVA_04958 0.19 -0.3 394,584 - BACOVA_04958 0.19 -0.1 394,591 + BACOVA_04958 0.19 -0.3 394,592 - BACOVA_04958 0.19 +0.2 394,603 - BACOVA_04958 0.20 -0.6 394,603 - BACOVA_04958 0.20 +0.3 394,636 + BACOVA_04958 0.23 -0.1 394,637 - BACOVA_04958 0.23 -0.1 394,638 + BACOVA_04958 0.23 -0.3 394,638 + BACOVA_04958 0.23 +1.1 394,646 + BACOVA_04958 0.24 -0.1 394,705 + BACOVA_04958 0.28 -0.9 394,706 - BACOVA_04958 0.28 +0.0 394,706 - BACOVA_04958 0.28 -0.6 394,708 + BACOVA_04958 0.28 -1.3 394,709 - BACOVA_04958 0.28 -0.3 394,728 + BACOVA_04958 0.30 +0.7 394,728 + BACOVA_04958 0.30 +0.1 394,729 - BACOVA_04958 0.30 +0.1 394,745 - BACOVA_04958 0.31 +0.2 394,760 + BACOVA_04958 0.32 -0.6 394,760 + BACOVA_04958 0.32 +0.4 394,760 + BACOVA_04958 0.32 -0.3 394,761 - BACOVA_04958 0.32 +0.9 394,763 + BACOVA_04958 0.32 -0.6 394,795 - BACOVA_04958 0.35 +0.2 394,801 + BACOVA_04958 0.35 +0.5 394,802 - BACOVA_04958 0.35 -0.0 394,802 - BACOVA_04958 0.35 -0.5 394,807 + BACOVA_04958 0.36 +0.2 394,903 + BACOVA_04958 0.43 +1.1 394,945 - BACOVA_04958 0.46 -0.4 394,949 + BACOVA_04958 0.47 -0.1 394,949 + BACOVA_04958 0.47 -1.5 394,953 + BACOVA_04958 0.47 -0.1 394,953 + BACOVA_04958 0.47 -0.5 394,954 - BACOVA_04958 0.47 -0.5 394,954 - BACOVA_04958 0.47 -1.3 394,963 + BACOVA_04958 0.48 -0.6 394,971 + BACOVA_04958 0.48 -0.3 394,976 + BACOVA_04958 0.49 +0.2 394,976 + BACOVA_04958 0.49 -0.3 394,989 - BACOVA_04958 0.50 +0.3 395,011 + BACOVA_04958 0.51 -1.6 395,017 + BACOVA_04958 0.52 -0.8 395,017 + BACOVA_04958 0.52 -0.5 395,063 - BACOVA_04958 0.55 -1.0 395,066 + BACOVA_04958 0.55 +0.4 395,066 + BACOVA_04958 0.55 -0.3 395,066 + BACOVA_04958 0.55 +0.0 395,067 - BACOVA_04958 0.56 -0.9 395,067 - BACOVA_04958 0.56 -1.5 395,136 + BACOVA_04958 0.61 -0.6 395,184 + BACOVA_04958 0.64 +0.8 395,184 + BACOVA_04958 0.64 +0.3 395,184 + BACOVA_04958 0.64 -1.4 395,185 - BACOVA_04958 0.65 +1.1 395,210 + BACOVA_04958 0.66 +0.1 395,236 + BACOVA_04958 0.68 -0.7 395,248 + BACOVA_04958 0.69 -0.1 395,315 + BACOVA_04958 0.74 -0.4 395,414 + BACOVA_04958 0.82 -1.4 395,416 + BACOVA_04958 0.82 -1.6 395,416 + BACOVA_04958 0.82 -0.7 395,416 + BACOVA_04958 0.82 -0.1 395,417 - BACOVA_04958 0.82 -0.1 395,417 - BACOVA_04958 0.82 -0.7 395,417 - BACOVA_04958 0.82 +0.6 395,417 - BACOVA_04958 0.82 -1.4 395,417 - BACOVA_04958 0.82 -0.8 395,441 + BACOVA_04958 0.84 +1.6 395,453 + BACOVA_04958 0.85 +0.7 395,530 + -0.8 395,555 - -0.6 395,560 - -1.4 395,577 + -1.4 395,577 + -0.6 395,672 + -1.0 395,681 + -0.8 395,690 - -0.4 395,774 - -0.6 395,778 - -0.0 395,778 - -1.0 395,778 - +0.0 395,778 - +0.4 395,814 + BACOVA_04959 0.29 +0.7 395,815 - BACOVA_04959 0.30 -0.9 395,896 + +0.8 395,928 - -0.6 395,958 + -0.6 395,959 - +0.2 395,959 - +0.5 395,978 - -0.7 395,993 - -0.4 396,039 + BACOVA_04960 0.14 -0.6 396,043 - BACOVA_04960 0.15 -1.2 396,043 - BACOVA_04960 0.15 +1.4 396,070 + BACOVA_04960 0.17 -1.0 396,070 + BACOVA_04960 0.17 -0.6 396,210 + BACOVA_04960 0.31 -0.8 396,213 + BACOVA_04960 0.31 -0.1 396,214 - BACOVA_04960 0.31 +0.4 396,214 - BACOVA_04960 0.31 -0.1 396,228 - BACOVA_04960 0.32 -1.3 396,285 + BACOVA_04960 0.38 +1.2 396,286 - BACOVA_04960 0.38 +1.1 396,286 - BACOVA_04960 0.38 -0.5 396,286 - BACOVA_04960 0.38 -1.3 396,295 + BACOVA_04960 0.39 -1.8 396,296 - BACOVA_04960 0.39 +0.1 396,302 - BACOVA_04960 0.40 +0.1 396,367 + BACOVA_04960 0.46 -1.1 396,368 - BACOVA_04960 0.46 +0.1 396,393 + BACOVA_04960 0.48 +0.4 396,464 - BACOVA_04960 0.55 -0.0 396,479 - BACOVA_04960 0.57 +0.7 396,487 + BACOVA_04960 0.57 -1.1 396,511 + BACOVA_04960 0.60 +0.2 396,596 + BACOVA_04960 0.68 +1.0 396,603 + BACOVA_04960 0.69 +0.2 396,603 + BACOVA_04960 0.69 +0.5 396,604 - BACOVA_04960 0.69 +0.2 396,642 + BACOVA_04960 0.72 +1.6 396,643 - BACOVA_04960 0.72 +0.4 396,647 - BACOVA_04960 0.73 +0.3 396,647 - BACOVA_04960 0.73 +0.5
Or see this region's nucleotide sequence