Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04041

Experiment: ABB 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04039 and BACOVA_04040 are separated by 22 nucleotidesBACOVA_04040 and BACOVA_04041 are separated by 113 nucleotidesBACOVA_04041 and BACOVA_04042 are separated by 102 nucleotidesBACOVA_04042 and BACOVA_04043 are separated by 22 nucleotides BACOVA_04039: BACOVA_04039 - metallo-beta-lactamase domain protein, at 372,326 to 372,985 _04039 BACOVA_04040: BACOVA_04040 - 16S rRNA methyltransferase GidB, at 373,008 to 373,628 _04040 BACOVA_04041: BACOVA_04041 - hypothetical protein, at 373,742 to 374,635 _04041 BACOVA_04042: BACOVA_04042 - putative metal-binding protein, at 374,738 to 375,022 _04042 BACOVA_04043: BACOVA_04043 - Ser/Thr phosphatase family protein, at 375,045 to 376,130 _04043 Position (kb) 373 374 375Strain fitness (log2 ratio) -2 -1 0 1 2at 372.773 kb on - strand, within BACOVA_04039at 372.785 kb on + strand, within BACOVA_04039at 372.785 kb on + strand, within BACOVA_04039at 372.809 kb on + strand, within BACOVA_04039at 372.827 kb on - strand, within BACOVA_04039at 372.865 kb on - strand, within BACOVA_04039at 372.898 kb on + strand, within BACOVA_04039at 372.899 kb on - strand, within BACOVA_04039at 372.914 kb on + strand, within BACOVA_04039at 372.914 kb on + strand, within BACOVA_04039at 372.981 kb on - strandat 372.997 kb on + strandat 372.997 kb on + strandat 372.997 kb on + strandat 372.998 kb on - strandat 372.999 kb on + strandat 373.000 kb on - strandat 373.021 kb on + strandat 373.021 kb on + strandat 373.022 kb on - strandat 373.044 kb on + strandat 373.073 kb on + strand, within BACOVA_04040at 373.073 kb on + strand, within BACOVA_04040at 373.074 kb on - strand, within BACOVA_04040at 373.074 kb on - strand, within BACOVA_04040at 373.089 kb on - strand, within BACOVA_04040at 373.089 kb on - strand, within BACOVA_04040at 373.089 kb on - strand, within BACOVA_04040at 373.140 kb on - strand, within BACOVA_04040at 373.140 kb on - strand, within BACOVA_04040at 373.140 kb on - strand, within BACOVA_04040at 373.187 kb on + strand, within BACOVA_04040at 373.324 kb on - strand, within BACOVA_04040at 373.330 kb on - strand, within BACOVA_04040at 373.343 kb on + strand, within BACOVA_04040at 373.386 kb on + strand, within BACOVA_04040at 373.387 kb on - strand, within BACOVA_04040at 373.495 kb on + strand, within BACOVA_04040at 373.498 kb on - strand, within BACOVA_04040at 373.552 kb on + strand, within BACOVA_04040at 373.553 kb on - strand, within BACOVA_04040at 373.553 kb on - strand, within BACOVA_04040at 373.553 kb on - strand, within BACOVA_04040at 373.561 kb on + strand, within BACOVA_04040at 373.563 kb on + strand, within BACOVA_04040at 373.563 kb on + strand, within BACOVA_04040at 373.564 kb on - strand, within BACOVA_04040at 373.661 kb on + strandat 373.662 kb on - strandat 373.675 kb on + strandat 373.681 kb on - strandat 373.701 kb on + strandat 373.712 kb on + strandat 373.734 kb on + strandat 373.781 kb on + strandat 373.782 kb on - strandat 373.782 kb on - strandat 373.811 kb on + strandat 373.829 kb on - strandat 373.834 kb on - strand, within BACOVA_04041at 373.849 kb on - strand, within BACOVA_04041at 373.850 kb on + strand, within BACOVA_04041at 373.850 kb on + strand, within BACOVA_04041at 373.850 kb on + strand, within BACOVA_04041at 373.851 kb on - strand, within BACOVA_04041at 373.856 kb on - strand, within BACOVA_04041at 373.856 kb on - strand, within BACOVA_04041at 373.856 kb on - strand, within BACOVA_04041at 373.858 kb on - strand, within BACOVA_04041at 373.861 kb on - strand, within BACOVA_04041at 374.013 kb on + strand, within BACOVA_04041at 374.068 kb on + strand, within BACOVA_04041at 374.076 kb on + strand, within BACOVA_04041at 374.076 kb on + strand, within BACOVA_04041at 374.088 kb on + strand, within BACOVA_04041at 374.112 kb on + strand, within BACOVA_04041at 374.113 kb on - strand, within BACOVA_04041at 374.113 kb on - strand, within BACOVA_04041at 374.122 kb on - strand, within BACOVA_04041at 374.122 kb on - strand, within BACOVA_04041at 374.135 kb on + strand, within BACOVA_04041at 374.142 kb on - strand, within BACOVA_04041at 374.142 kb on - strand, within BACOVA_04041at 374.149 kb on + strand, within BACOVA_04041at 374.154 kb on + strand, within BACOVA_04041at 374.154 kb on + strand, within BACOVA_04041at 374.155 kb on - strand, within BACOVA_04041at 374.194 kb on - strand, within BACOVA_04041at 374.194 kb on - strand, within BACOVA_04041at 374.245 kb on - strand, within BACOVA_04041at 374.245 kb on - strand, within BACOVA_04041at 374.245 kb on - strand, within BACOVA_04041at 374.245 kb on - strand, within BACOVA_04041at 374.249 kb on - strand, within BACOVA_04041at 374.249 kb on - strand, within BACOVA_04041at 374.281 kb on - strand, within BACOVA_04041at 374.290 kb on + strand, within BACOVA_04041at 374.293 kb on - strand, within BACOVA_04041at 374.300 kb on + strand, within BACOVA_04041at 374.300 kb on + strand, within BACOVA_04041at 374.301 kb on - strand, within BACOVA_04041at 374.359 kb on - strand, within BACOVA_04041at 374.383 kb on + strand, within BACOVA_04041at 374.422 kb on + strand, within BACOVA_04041at 374.471 kb on - strand, within BACOVA_04041at 374.495 kb on + strand, within BACOVA_04041at 374.637 kb on - strandat 374.648 kb on + strandat 374.648 kb on + strandat 374.649 kb on - strandat 374.696 kb on + strandat 374.696 kb on + strandat 374.729 kb on - strandat 374.761 kb on + strandat 374.762 kb on - strandat 374.762 kb on - strandat 374.766 kb on - strandat 374.827 kb on + strand, within BACOVA_04042at 374.827 kb on + strand, within BACOVA_04042at 374.827 kb on + strand, within BACOVA_04042at 374.828 kb on - strand, within BACOVA_04042at 374.859 kb on + strand, within BACOVA_04042at 374.924 kb on - strand, within BACOVA_04042at 374.961 kb on - strand, within BACOVA_04042at 375.017 kb on + strandat 375.022 kb on + strandat 375.022 kb on + strandat 375.022 kb on + strandat 375.022 kb on + strandat 375.023 kb on - strandat 375.023 kb on - strandat 375.040 kb on - strandat 375.042 kb on + strandat 375.042 kb on + strandat 375.124 kb on - strandat 375.127 kb on + strandat 375.128 kb on - strandat 375.174 kb on + strand, within BACOVA_04043at 375.175 kb on - strand, within BACOVA_04043at 375.176 kb on + strand, within BACOVA_04043at 375.176 kb on + strand, within BACOVA_04043at 375.177 kb on - strand, within BACOVA_04043at 375.311 kb on + strand, within BACOVA_04043at 375.328 kb on - strand, within BACOVA_04043at 375.385 kb on - strand, within BACOVA_04043at 375.385 kb on - strand, within BACOVA_04043at 375.444 kb on - strand, within BACOVA_04043at 375.476 kb on - strand, within BACOVA_04043at 375.498 kb on - strand, within BACOVA_04043at 375.499 kb on + strand, within BACOVA_04043at 375.499 kb on + strand, within BACOVA_04043at 375.500 kb on - strand, within BACOVA_04043at 375.500 kb on - strand, within BACOVA_04043at 375.500 kb on - strand, within BACOVA_04043at 375.510 kb on - strand, within BACOVA_04043at 375.562 kb on - strand, within BACOVA_04043at 375.579 kb on + strand, within BACOVA_04043at 375.580 kb on - strand, within BACOVA_04043

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Per-strain Table

Position Strand Gene LocusTag Fraction ABB 1 x (C) complex media
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372,773 - BACOVA_04039 0.68 +2.4
372,785 + BACOVA_04039 0.70 +0.5
372,785 + BACOVA_04039 0.70 +0.5
372,809 + BACOVA_04039 0.73 -1.0
372,827 - BACOVA_04039 0.76 +0.6
372,865 - BACOVA_04039 0.82 -2.3
372,898 + BACOVA_04039 0.87 -2.2
372,899 - BACOVA_04039 0.87 +0.9
372,914 + BACOVA_04039 0.89 -0.3
372,914 + BACOVA_04039 0.89 +0.8
372,981 - -0.0
372,997 + +0.3
372,997 + +0.4
372,997 + -0.7
372,998 - +0.4
372,999 + +0.4
373,000 - +0.4
373,021 + +0.9
373,021 + -1.7
373,022 - -0.6
373,044 + +0.1
373,073 + BACOVA_04040 0.10 -1.7
373,073 + BACOVA_04040 0.10 -0.2
373,074 - BACOVA_04040 0.11 -1.0
373,074 - BACOVA_04040 0.11 +0.6
373,089 - BACOVA_04040 0.13 -0.2
373,089 - BACOVA_04040 0.13 -0.7
373,089 - BACOVA_04040 0.13 -0.5
373,140 - BACOVA_04040 0.21 -1.1
373,140 - BACOVA_04040 0.21 -1.7
373,140 - BACOVA_04040 0.21 -1.5
373,187 + BACOVA_04040 0.29 +0.5
373,324 - BACOVA_04040 0.51 -0.8
373,330 - BACOVA_04040 0.52 -0.9
373,343 + BACOVA_04040 0.54 +0.1
373,386 + BACOVA_04040 0.61 -1.0
373,387 - BACOVA_04040 0.61 +0.6
373,495 + BACOVA_04040 0.78 -0.3
373,498 - BACOVA_04040 0.79 -1.9
373,552 + BACOVA_04040 0.88 +0.3
373,553 - BACOVA_04040 0.88 -1.4
373,553 - BACOVA_04040 0.88 +1.5
373,553 - BACOVA_04040 0.88 +0.1
373,561 + BACOVA_04040 0.89 +0.8
373,563 + BACOVA_04040 0.89 -1.4
373,563 + BACOVA_04040 0.89 -0.8
373,564 - BACOVA_04040 0.90 -0.3
373,661 + -1.3
373,662 - -0.5
373,675 + +0.8
373,681 - +0.1
373,701 + -0.9
373,712 + +0.3
373,734 + +1.0
373,781 + -0.1
373,782 - -0.2
373,782 - +0.5
373,811 + -0.6
373,829 - +0.6
373,834 - BACOVA_04041 0.10 +0.5
373,849 - BACOVA_04041 0.12 +0.3
373,850 + BACOVA_04041 0.12 -0.8
373,850 + BACOVA_04041 0.12 -1.5
373,850 + BACOVA_04041 0.12 +0.2
373,851 - BACOVA_04041 0.12 +1.3
373,856 - BACOVA_04041 0.13 -0.7
373,856 - BACOVA_04041 0.13 +1.1
373,856 - BACOVA_04041 0.13 +0.6
373,858 - BACOVA_04041 0.13 +0.0
373,861 - BACOVA_04041 0.13 +0.4
374,013 + BACOVA_04041 0.30 -0.7
374,068 + BACOVA_04041 0.36 -0.5
374,076 + BACOVA_04041 0.37 -2.4
374,076 + BACOVA_04041 0.37 -0.1
374,088 + BACOVA_04041 0.39 -0.5
374,112 + BACOVA_04041 0.41 +1.0
374,113 - BACOVA_04041 0.41 -0.4
374,113 - BACOVA_04041 0.41 +0.8
374,122 - BACOVA_04041 0.43 +1.0
374,122 - BACOVA_04041 0.43 +1.0
374,135 + BACOVA_04041 0.44 -0.7
374,142 - BACOVA_04041 0.45 +0.8
374,142 - BACOVA_04041 0.45 -0.1
374,149 + BACOVA_04041 0.46 -2.4
374,154 + BACOVA_04041 0.46 +0.3
374,154 + BACOVA_04041 0.46 +0.5
374,155 - BACOVA_04041 0.46 -0.3
374,194 - BACOVA_04041 0.51 -0.0
374,194 - BACOVA_04041 0.51 -1.3
374,245 - BACOVA_04041 0.56 +0.2
374,245 - BACOVA_04041 0.56 +0.2
374,245 - BACOVA_04041 0.56 +0.1
374,245 - BACOVA_04041 0.56 +1.2
374,249 - BACOVA_04041 0.57 -1.0
374,249 - BACOVA_04041 0.57 +0.9
374,281 - BACOVA_04041 0.60 +0.1
374,290 + BACOVA_04041 0.61 +0.5
374,293 - BACOVA_04041 0.62 -0.0
374,300 + BACOVA_04041 0.62 +0.3
374,300 + BACOVA_04041 0.62 +0.0
374,301 - BACOVA_04041 0.63 -1.1
374,359 - BACOVA_04041 0.69 +0.0
374,383 + BACOVA_04041 0.72 +0.0
374,422 + BACOVA_04041 0.76 +0.2
374,471 - BACOVA_04041 0.82 -0.3
374,495 + BACOVA_04041 0.84 -0.2
374,637 - -0.4
374,648 + +1.0
374,648 + +0.2
374,649 - +1.4
374,696 + -2.0
374,696 + +0.9
374,729 - +0.1
374,761 + -1.5
374,762 - -0.2
374,762 - +0.9
374,766 - -0.8
374,827 + BACOVA_04042 0.31 +0.3
374,827 + BACOVA_04042 0.31 -1.1
374,827 + BACOVA_04042 0.31 +1.2
374,828 - BACOVA_04042 0.32 -1.6
374,859 + BACOVA_04042 0.42 +0.4
374,924 - BACOVA_04042 0.65 +0.5
374,961 - BACOVA_04042 0.78 +0.8
375,017 + +0.7
375,022 + -0.5
375,022 + +0.4
375,022 + -0.8
375,022 + -0.6
375,023 - -1.4
375,023 - +0.3
375,040 - +0.2
375,042 + -0.5
375,042 + +0.2
375,124 - +1.1
375,127 + -0.8
375,128 - +0.0
375,174 + BACOVA_04043 0.12 +1.1
375,175 - BACOVA_04043 0.12 -0.6
375,176 + BACOVA_04043 0.12 +0.2
375,176 + BACOVA_04043 0.12 -0.7
375,177 - BACOVA_04043 0.12 -0.5
375,311 + BACOVA_04043 0.24 -0.1
375,328 - BACOVA_04043 0.26 -0.1
375,385 - BACOVA_04043 0.31 +0.7
375,385 - BACOVA_04043 0.31 -1.4
375,444 - BACOVA_04043 0.37 -0.7
375,476 - BACOVA_04043 0.40 +0.6
375,498 - BACOVA_04043 0.42 -0.3
375,499 + BACOVA_04043 0.42 -0.1
375,499 + BACOVA_04043 0.42 -0.6
375,500 - BACOVA_04043 0.42 +0.4
375,500 - BACOVA_04043 0.42 +0.6
375,500 - BACOVA_04043 0.42 -1.1
375,510 - BACOVA_04043 0.43 +0.8
375,562 - BACOVA_04043 0.48 -0.2
375,579 + BACOVA_04043 0.49 +0.7
375,580 - BACOVA_04043 0.49 +0.5

Or see this region's nucleotide sequence