Strain Fitness in Escherichia fergusonii Becca around EFB2_03446

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,597,928	+				-0.9
3,597,928	+				-3.1
3,597,928	+				-0.9
3,597,928	+				-3.5
3,597,928	+				-2.3
3,597,928	+				-0.2
3,597,928	+				-1.1
3,597,929	-				+1.2
3,597,929	-				-1.1
3,597,929	-				+1.3
3,597,929	-				+0.2
3,597,932	+				-0.1
3,597,932	+				+0.9
3,597,932	+				-1.4
3,597,932	+				+0.3
3,597,932	+				-1.0
3,597,932	+				-2.4
3,597,932	+				+0.4
3,597,933	-				-1.9
3,597,933	-				-1.2
3,597,933	-				-2.8
3,597,933	-				+0.3
3,597,933	-				-1.0
3,597,933	-				-1.8
3,597,933	-				-0.7
3,597,933	-				-0.1
3,597,972	+				-0.9
3,597,972	+				+1.0
3,597,972	+				+1.7
3,597,972	+				-1.5
3,597,972	+				+0.0
3,597,972	+				-0.7
3,597,973	-				+0.7
3,597,973	-				-1.9
3,597,973	-				-1.1
3,597,973	-				-0.2
3,597,976	+				+1.1
3,597,976	+				+1.5
3,597,976	+				-1.1
3,597,976	+				+3.5
3,597,976	+				-2.2
3,597,976	+				-2.2
3,597,976	+				-2.1
3,597,977	-				+2.9
3,597,977	-				-1.7
3,597,977	-				+0.1
3,597,977	-				+0.3
3,597,977	-				+0.4
3,597,977	-				+0.9
3,597,977	-				-2.9
3,597,990	+				-0.4
3,597,990	+				+1.6
3,597,990	+				+0.9
3,597,990	+				-0.9
3,597,990	+				-1.8
3,597,990	+				-0.4
3,597,990	+				+2.6
3,597,990	+				+2.8
3,597,990	+				-0.1
3,597,990	+				-1.5
3,597,990	+				-0.8
3,597,990	+				+2.1
3,597,990	+				+0.9
3,597,990	+				+0.4
3,597,990	+				-2.4
3,597,990	+				-1.0
3,597,991	-				-1.0
3,597,991	-				-0.4
3,597,991	-				-1.6
3,597,991	-				-1.0
3,597,991	-				-1.7
3,597,991	-				+1.2
3,597,992	+				-2.7
3,597,992	+				-0.9
3,597,992	+				+1.8
3,597,992	+				-0.4
3,597,992	+				+0.1
3,597,992	+				-3.3
3,597,992	+				-1.6
3,597,992	+				+1.1
3,597,992	+				-1.7
3,597,992	+				+0.7
3,597,992	+				+1.0
3,597,992	+				-3.1
3,597,992	+				-1.4
3,597,993	-				+1.5
3,597,993	-				-3.8
3,597,993	-				-2.7
3,597,993	-				-1.1
3,597,993	-				-0.1
3,597,993	-				+1.4
3,597,993	-				-1.0
3,598,033	+				-0.5
3,598,093	+				-0.3
3,598,093	+				+0.4
3,598,093	+				+2.5
3,598,094	-				+1.5
3,598,094	-				-0.2
3,598,099	+				+2.0
3,598,099	+				-2.7
3,598,099	+				+0.9
3,598,099	+				+0.4
3,598,099	+				-0.9
3,598,099	+				+1.3
3,598,099	+				-2.0
3,598,099	+				+0.0
3,598,099	+				-2.4
3,598,099	+				-2.4
3,598,099	+				+0.4
3,598,100	-				+1.8
3,598,100	-				+0.1
3,598,100	-				+2.0
3,598,100	-				-2.3
3,598,100	-				-0.5
3,598,100	-				+0.1
3,598,100	-				-0.0
3,598,100	-				-1.9
3,598,100	-				+0.8
3,598,100	-				-3.1
3,598,100	-				+1.3
3,598,100	-				-0.0
3,598,100	-				+2.2
3,598,100	-				-2.8
3,598,100	-				+0.7
3,598,100	-				+0.8
3,598,100	-				+0.2
3,598,100	-				+1.2
3,598,105	+				+1.6
3,598,105	+				+1.6
3,598,105	+				-1.6
3,598,105	+				+2.6
3,598,105	+				-0.8
3,598,105	+				-1.3
3,598,105	+				-1.3
3,598,105	+				+1.5
3,598,105	+				-0.1
3,598,105	+				+0.2
3,598,106	-				+0.2
3,598,106	-				+1.0
3,598,106	-				-2.2
3,598,106	-				-1.1
3,598,106	-				+0.3
3,598,106	-				-0.6
3,598,106	-				+0.9
3,598,106	-				-2.6
3,598,106	-				-1.7
3,598,106	-				-0.4
3,598,106	-				+2.1
3,598,106	-				-1.9
3,598,106	-				-1.4
3,598,107	+				+1.3
3,598,107	+				+0.8
3,598,107	+				-0.3
3,598,107	+				+1.4
3,598,107	+				-0.7
3,598,107	+				+1.5
3,598,107	+				-1.4
3,598,107	+				-3.3
3,598,107	+				+1.6
3,598,107	+				-2.5
3,598,107	+				+0.0
3,598,107	+				+0.5
3,598,107	+				+0.8
3,598,108	-				+1.4
3,598,108	-				-3.3
3,598,108	-				+0.2
3,598,108	-				+1.4
3,598,108	-				-1.0
3,598,108	-				-0.6
3,598,108	-				-1.8
3,598,108	-				+0.3
3,598,108	-				+0.1
3,598,108	-				-0.3
3,598,108	-				+1.4
3,598,160	+				-0.5
3,598,160	+				-3.8
3,598,160	+				-0.1
3,598,160	+				-2.9
3,598,160	+				-3.1
3,598,160	+				-2.1
3,598,160	+				-1.4
3,598,160	+				+0.2
3,598,160	+				-2.1
3,598,160	+				+2.8
3,598,160	+				-1.0
3,598,160	+				+1.0
3,598,160	+				+2.2
3,598,160	+				+0.5
3,598,160	+				-1.3
3,598,160	+				-2.3
3,598,160	+				-0.5
3,598,161	-				-1.6
3,598,161	-				+1.0
3,598,161	-				-2.3
3,598,161	-				+0.5
3,598,161	-				+2.8
3,598,161	-				+1.6
3,598,161	-				-0.7
3,598,161	-				-2.8
3,598,161	-				-1.2
3,598,161	-				-1.2
3,598,257	+		EFB2_03445	0.21	-2.9
3,598,257	+		EFB2_03445	0.21	+0.3
3,598,257	+		EFB2_03445	0.21	-0.2
3,598,257	+		EFB2_03445	0.21	-2.1
3,598,257	+		EFB2_03445	0.21	-0.9
3,598,257	+		EFB2_03445	0.21	-2.4
3,598,258	-		EFB2_03445	0.21	+1.8
3,598,258	-		EFB2_03445	0.21	+1.8
3,598,258	-		EFB2_03445	0.21	+2.4
3,598,258	-		EFB2_03445	0.21	+0.6
3,598,258	-		EFB2_03445	0.21	+0.8
3,598,258	-		EFB2_03445	0.21	+1.2
3,598,261	+		EFB2_03445	0.22	-4.1
3,598,262	-		EFB2_03445	0.22	+0.8
3,598,262	-		EFB2_03445	0.22	+0.0
3,598,262	-		EFB2_03445	0.22	+0.9
3,598,262	-		EFB2_03445	0.22	-0.4
3,598,294	+		EFB2_03445	0.26	-1.2
3,598,294	+		EFB2_03445	0.26	-0.1
3,598,301	+		EFB2_03445	0.27	+1.4
3,598,301	+		EFB2_03445	0.27	-3.3
3,598,301	+		EFB2_03445	0.27	-0.5
3,598,301	+		EFB2_03445	0.27	-1.0
3,598,301	+		EFB2_03445	0.27	-1.9
3,598,301	+		EFB2_03445	0.27	-2.3
3,598,301	+		EFB2_03445	0.27	-3.7
3,598,301	+		EFB2_03445	0.27	+1.1
3,598,301	+		EFB2_03445	0.27	+0.8
3,598,301	+		EFB2_03445	0.27	+1.0
3,598,301	+		EFB2_03445	0.27	+0.5
3,598,301	+		EFB2_03445	0.27	-1.4
3,598,301	+		EFB2_03445	0.27	+0.1
3,598,302	-		EFB2_03445	0.27	+1.0
3,598,302	-		EFB2_03445	0.27	-1.1
3,598,302	-		EFB2_03445	0.27	+1.3
3,598,302	-		EFB2_03445	0.27	+1.0
3,598,302	-		EFB2_03445	0.27	-2.4
3,598,302	-		EFB2_03445	0.27	-1.8
3,598,302	-		EFB2_03445	0.27	+2.6
3,598,302	-		EFB2_03445	0.27	-0.2
3,598,302	-		EFB2_03445	0.27	-4.0
3,598,302	-		EFB2_03445	0.27	+0.8
3,598,302	-		EFB2_03445	0.27	+1.0
3,598,302	-		EFB2_03445	0.27	+2.8
3,598,302	-		EFB2_03445	0.27	-0.8
3,598,302	-		EFB2_03445	0.27	+1.6
3,598,302	-		EFB2_03445	0.27	+0.7
3,598,302	-		EFB2_03445	0.27	-2.6
3,598,302	-		EFB2_03445	0.27	+0.4
3,598,302	-		EFB2_03445	0.27	+1.2
3,598,302	-		EFB2_03445	0.27	-1.6
3,598,302	-		EFB2_03445	0.27	-0.5
3,598,302	-		EFB2_03445	0.27	-1.4
3,598,302	-		EFB2_03445	0.27	-3.4
3,598,302	-		EFB2_03445	0.27	+1.8
3,598,302	-		EFB2_03445	0.27	-0.3
3,598,346	-		EFB2_03445	0.33	-1.1
3,598,346	-		EFB2_03445	0.33	-0.6
3,598,352	+		EFB2_03445	0.34	+1.1
3,598,352	+		EFB2_03445	0.34	-2.3
3,598,352	+		EFB2_03445	0.34	+0.4
3,598,352	+		EFB2_03445	0.34	+0.8
3,598,352	+		EFB2_03445	0.34	-2.3
3,598,352	+		EFB2_03445	0.34	+1.6
3,598,353	-		EFB2_03445	0.34	+1.5
3,598,420	+		EFB2_03445	0.43	+2.5
3,598,420	+		EFB2_03445	0.43	-1.3
3,598,420	+		EFB2_03445	0.43	+0.9
3,598,488	+		EFB2_03445	0.52	+0.8
3,598,488	+		EFB2_03445	0.52	+0.3
3,598,489	-		EFB2_03445	0.52	+0.6
3,598,489	-		EFB2_03445	0.52	-0.6
3,598,489	-		EFB2_03445	0.52	-0.2
3,598,489	-		EFB2_03445	0.52	-1.2
3,598,498	+		EFB2_03445	0.54	+0.9
3,598,498	+		EFB2_03445	0.54	-2.2
3,598,498	+		EFB2_03445	0.54	-0.4
3,598,498	+		EFB2_03445	0.54	-1.9
3,598,498	+		EFB2_03445	0.54	+2.6
3,598,498	+		EFB2_03445	0.54	-0.2
3,598,498	+		EFB2_03445	0.54	-3.8
3,598,498	+		EFB2_03445	0.54	-1.1
3,598,499	-		EFB2_03445	0.54	+1.5
3,598,499	-		EFB2_03445	0.54	+0.8
3,598,499	-		EFB2_03445	0.54	-0.3
3,598,499	-		EFB2_03445	0.54	-1.3
3,598,555	-		EFB2_03445	0.61	-0.9
3,598,571	+		EFB2_03445	0.64	+0.3
3,598,571	+		EFB2_03445	0.64	-2.8
3,598,571	+		EFB2_03445	0.64	+6.7
3,598,572	-		EFB2_03445	0.64	-0.5
3,598,575	+		EFB2_03445	0.64	-1.1
3,598,575	+		EFB2_03445	0.64	+1.7
3,598,575	+		EFB2_03445	0.64	+0.2
3,598,575	+		EFB2_03445	0.64	-0.0
3,598,575	+		EFB2_03445	0.64	-0.1
3,598,576	-		EFB2_03445	0.64	+0.1
3,598,576	-		EFB2_03445	0.64	-0.6
3,598,576	-		EFB2_03445	0.64	-1.3
3,598,576	-		EFB2_03445	0.64	-0.7
3,598,576	-		EFB2_03445	0.64	+0.8
3,598,576	-		EFB2_03445	0.64	-2.7
3,598,576	-		EFB2_03445	0.64	+0.9
3,598,576	-		EFB2_03445	0.64	-2.8
3,598,576	-		EFB2_03445	0.64	+1.6
3,598,576	-		EFB2_03445	0.64	-2.8
3,598,576	-		EFB2_03445	0.64	+1.6
3,598,585	+		EFB2_03445	0.65	+1.8
3,598,592	+		EFB2_03445	0.66	-0.1
3,598,679	-		EFB2_03445	0.78	+3.2
3,598,709	+		EFB2_03445	0.82	+0.6
3,598,710	-		EFB2_03445	0.82	-1.7
3,598,744	+		EFB2_03445	0.87	-3.2
3,598,754	+		EFB2_03445	0.88	+1.4
3,598,754	+		EFB2_03445	0.88	-2.1
3,598,754	+		EFB2_03445	0.88	-2.4
3,598,754	+		EFB2_03445	0.88	-1.1
3,598,754	+		EFB2_03445	0.88	-0.3
3,598,754	+		EFB2_03445	0.88	-2.0
3,598,754	+		EFB2_03445	0.88	-2.2
3,598,754	+		EFB2_03445	0.88	-2.0
3,598,754	+		EFB2_03445	0.88	-2.8
3,598,754	+		EFB2_03445	0.88	-2.8
3,598,754	+		EFB2_03445	0.88	-1.4
3,598,754	+		EFB2_03445	0.88	-1.5
3,598,754	+		EFB2_03445	0.88	+0.0
3,598,754	+		EFB2_03445	0.88	-0.6
3,598,754	+		EFB2_03445	0.88	-2.7
3,598,754	+		EFB2_03445	0.88	-0.6
3,598,754	+		EFB2_03445	0.88	-2.5
3,598,754	+		EFB2_03445	0.88	+0.8
3,598,754	+		EFB2_03445	0.88	-1.8
3,598,754	+		EFB2_03445	0.88	+0.7
3,598,754	+		EFB2_03445	0.88	-3.5
3,598,754	+		EFB2_03445	0.88	-2.2
3,598,754	+		EFB2_03445	0.88	-0.4
3,598,755	-		EFB2_03445	0.88	+0.0
3,598,755	-		EFB2_03445	0.88	-2.8
3,598,755	-		EFB2_03445	0.88	+0.2
3,598,755	-		EFB2_03445	0.88	+0.7
3,598,755	-		EFB2_03445	0.88	+0.9
3,598,755	-		EFB2_03445	0.88	+0.3
3,598,755	-		EFB2_03445	0.88	-2.2
3,598,755	-		EFB2_03445	0.88	-0.6
3,598,755	-		EFB2_03445	0.88	-1.9
3,598,755	-		EFB2_03445	0.88	+0.6
3,598,755	-		EFB2_03445	0.88	-0.7
3,598,755	-		EFB2_03445	0.88	+0.7
3,598,755	-		EFB2_03445	0.88	-0.1
3,598,755	-		EFB2_03445	0.88	+0.4
3,598,755	-		EFB2_03445	0.88	+2.0
3,598,755	-		EFB2_03445	0.88	-1.4
3,598,755	-		EFB2_03445	0.88	-0.3
3,598,758	+		EFB2_03445	0.89	-1.8
3,598,758	+		EFB2_03445	0.89	-1.8
3,598,758	+		EFB2_03445	0.89	+1.2
3,598,758	+		EFB2_03445	0.89	+0.7
3,598,758	+		EFB2_03445	0.89	-2.5
3,598,759	-		EFB2_03445	0.89	-2.2
3,598,759	-		EFB2_03445	0.89	+0.2
3,598,759	-		EFB2_03445	0.89	-0.0
3,598,759	-		EFB2_03445	0.89	-0.7
3,598,759	-		EFB2_03445	0.89	-0.0
3,598,759	-		EFB2_03445	0.89	-1.9
3,598,759	-		EFB2_03445	0.89	+0.5
3,598,759	-		EFB2_03445	0.89	+2.2
3,598,759	-		EFB2_03445	0.89	+1.2
3,598,759	-		EFB2_03445	0.89	-2.2
3,598,759	-		EFB2_03445	0.89	-0.7
3,598,759	-		EFB2_03445	0.89	-2.4
3,598,759	-		EFB2_03445	0.89	-1.3
3,598,759	-		EFB2_03445	0.89	+2.7
3,598,759	-		EFB2_03445	0.89	-2.7
3,598,774	+				+0.7
3,598,774	+				-1.7
3,598,774	+				-0.2
3,598,774	+				+0.0
3,598,774	+				-0.6
3,598,774	+				-3.0
3,598,774	+				+1.7
3,598,775	-				+1.0
3,598,775	-				+1.3
3,598,775	-				+0.9
3,598,775	-				+0.5
3,598,804	+				+0.4
3,598,804	+				+1.2
3,598,805	-				+0.5
3,598,805	-				+0.1
3,598,805	-				-4.3
3,598,838	+				+0.8
3,598,838	+				-0.6
3,598,838	+				-1.2
3,598,838	+				-1.1
3,598,838	+				+1.0
3,598,838	+				+0.8
3,598,838	+				-2.4
3,598,838	+				-0.1
3,598,838	+				+0.5
3,598,838	+				-1.1
3,598,838	+				-3.0
3,598,838	+				+0.3
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