Strain Fitness in Escherichia fergusonii Becca around EFB2_03398

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,547,279	+		EFB2_03396	0.45	+0.8
3,547,279	+		EFB2_03396	0.45	+0.9
3,547,279	+		EFB2_03396	0.45	+0.8
3,547,282	+		EFB2_03396	0.46	+1.1
3,547,282	+		EFB2_03396	0.46	+0.3
3,547,282	+		EFB2_03396	0.46	+0.9
3,547,282	+		EFB2_03396	0.46	-3.0
3,547,282	+		EFB2_03396	0.46	+2.8
3,547,282	+		EFB2_03396	0.46	-0.0
3,547,282	+		EFB2_03396	0.46	-2.1
3,547,282	+		EFB2_03396	0.46	-0.3
3,547,282	+		EFB2_03396	0.46	+1.2
3,547,282	+		EFB2_03396	0.46	-0.2
3,547,282	+		EFB2_03396	0.46	+1.9
3,547,282	+		EFB2_03396	0.46	-1.7
3,547,282	+		EFB2_03396	0.46	-2.0
3,547,283	-		EFB2_03396	0.46	-0.8
3,547,283	-		EFB2_03396	0.46	-3.8
3,547,283	-		EFB2_03396	0.46	+2.5
3,547,283	-		EFB2_03396	0.46	-0.2
3,547,283	-		EFB2_03396	0.46	+1.4
3,547,283	-		EFB2_03396	0.46	+0.3
3,547,283	-		EFB2_03396	0.46	+0.1
3,547,283	-		EFB2_03396	0.46	+0.5
3,547,283	-		EFB2_03396	0.46	-2.3
3,547,283	-		EFB2_03396	0.46	+0.4
3,547,323	-		EFB2_03396	0.54	+1.1
3,547,344	+		EFB2_03396	0.58	+2.9
3,547,344	+		EFB2_03396	0.58	-0.4
3,547,344	+		EFB2_03396	0.58	-0.7
3,547,344	+		EFB2_03396	0.58	-0.6
3,547,344	+		EFB2_03396	0.58	-2.4
3,547,344	+		EFB2_03396	0.58	-1.6
3,547,344	+		EFB2_03396	0.58	+0.4
3,547,344	+		EFB2_03396	0.58	-2.0
3,547,345	-		EFB2_03396	0.58	+1.1
3,547,345	-		EFB2_03396	0.58	-1.6
3,547,345	-		EFB2_03396	0.58	+1.3
3,547,345	-		EFB2_03396	0.58	-1.6
3,547,345	-		EFB2_03396	0.58	-2.1
3,547,345	-		EFB2_03396	0.58	-1.3
3,547,345	-		EFB2_03396	0.58	-2.0
3,547,345	-		EFB2_03396	0.58	-0.6
3,547,345	-		EFB2_03396	0.58	+1.2
3,547,347	+		EFB2_03396	0.58	-0.7
3,547,347	+		EFB2_03396	0.58	-1.3
3,547,347	+		EFB2_03396	0.58	+0.3
3,547,348	-		EFB2_03396	0.59	-2.1
3,547,348	-		EFB2_03396	0.59	+0.3
3,547,348	-		EFB2_03396	0.59	+0.6
3,547,348	-		EFB2_03396	0.59	-3.8
3,547,348	-		EFB2_03396	0.59	+1.8
3,547,375	+		EFB2_03396	0.64	-1.0
3,547,375	+		EFB2_03396	0.64	-2.6
3,547,376	-		EFB2_03396	0.64	+0.4
3,547,376	-		EFB2_03396	0.64	-0.0
3,547,376	-		EFB2_03396	0.64	-1.3
3,547,376	-		EFB2_03396	0.64	+0.6
3,547,438	+		EFB2_03396	0.76	+0.2
3,547,438	+		EFB2_03396	0.76	+0.0
3,547,438	+		EFB2_03396	0.76	+1.9
3,547,438	+		EFB2_03396	0.76	+0.1
3,547,438	+		EFB2_03396	0.76	-2.6
3,547,439	-		EFB2_03396	0.76	+0.6
3,547,439	-		EFB2_03396	0.76	-0.4
3,547,439	-		EFB2_03396	0.76	+0.8
3,547,439	-		EFB2_03396	0.76	-0.1
3,547,439	-		EFB2_03396	0.76	+1.6
3,547,439	-		EFB2_03396	0.76	+0.5
3,547,440	+		EFB2_03396	0.77	+0.5
3,547,441	-		EFB2_03396	0.77	-2.5
3,547,452	+		EFB2_03396	0.79	+0.3
3,547,452	+		EFB2_03396	0.79	+0.3
3,547,476	-		EFB2_03396	0.84	+0.4
3,547,499	+		EFB2_03396	0.88	+0.7
3,547,499	+		EFB2_03396	0.88	+1.6
3,547,499	+		EFB2_03396	0.88	-0.8
3,547,500	-		EFB2_03396	0.88	-1.3
3,547,500	-		EFB2_03396	0.88	+0.8
3,547,500	-		EFB2_03396	0.88	-2.9
3,547,559	+				-1.3
3,547,559	+				-3.8
3,547,559	+				+0.0
3,547,559	+				+1.3
3,547,560	-				-0.3
3,547,560	-				+2.4
3,547,578	-				+0.8
3,547,585	+				+0.0
3,547,585	+				-1.5
3,547,585	+				-0.2
3,547,585	+				-1.5
3,547,585	+				-1.6
3,547,585	+				+0.5
3,547,585	+				-0.7
3,547,585	+				-3.1
3,547,585	+				-0.6
3,547,585	+				+0.9
3,547,585	+				-0.2
3,547,585	+				-0.9
3,547,586	-				+0.5
3,547,586	-				+0.1
3,547,586	-				+1.0
3,547,586	-				+0.8
3,547,586	-				-1.7
3,547,586	-				+0.4
3,547,586	-				-2.0
3,547,591	+				-0.3
3,547,591	+				+0.8
3,547,591	+				-0.4
3,547,591	+				+1.5
3,547,591	+				+0.6
3,547,591	+				+0.8
3,547,592	-				+0.4
3,547,592	-				+1.9
3,547,640	+				+0.9
3,547,741	+		EFB2_03397	0.40	-0.1
3,547,741	+		EFB2_03397	0.40	-2.5
3,547,741	+		EFB2_03397	0.40	-0.5
3,547,741	+		EFB2_03397	0.40	-2.1
3,547,741	+		EFB2_03397	0.40	-3.0
3,547,741	+		EFB2_03397	0.40	-0.1
3,547,741	+		EFB2_03397	0.40	-3.3
3,547,741	+		EFB2_03397	0.40	-0.6
3,547,741	+		EFB2_03397	0.40	+0.7
3,547,741	+		EFB2_03397	0.40	+2.2
3,547,741	+		EFB2_03397	0.40	+1.7
3,547,741	+		EFB2_03397	0.40	-1.2
3,547,742	-		EFB2_03397	0.40	-3.2
3,547,742	-		EFB2_03397	0.40	+0.8
3,547,742	-		EFB2_03397	0.40	-2.3
3,547,742	-		EFB2_03397	0.40	+1.2
3,547,742	-		EFB2_03397	0.40	+0.4
3,547,742	-		EFB2_03397	0.40	-2.0
3,547,742	-		EFB2_03397	0.40	-2.4
3,547,742	-		EFB2_03397	0.40	-0.9
3,547,742	-		EFB2_03397	0.40	+0.2
3,547,742	-		EFB2_03397	0.40	-0.4
3,547,742	-		EFB2_03397	0.40	+1.8
3,547,742	-		EFB2_03397	0.40	+0.2
3,547,742	-		EFB2_03397	0.40	-0.1
3,547,742	-		EFB2_03397	0.40	+0.3
3,547,742	-		EFB2_03397	0.40	+0.7
3,547,742	-		EFB2_03397	0.40	-4.1
3,547,745	+		EFB2_03397	0.42	-1.6
3,547,745	+		EFB2_03397	0.42	-0.6
3,547,745	+		EFB2_03397	0.42	-0.5
3,547,746	-		EFB2_03397	0.42	-0.8
3,547,747	+		EFB2_03397	0.43	+0.3
3,547,747	+		EFB2_03397	0.43	+0.6
3,547,747	+		EFB2_03397	0.43	-2.0
3,547,747	+		EFB2_03397	0.43	+2.4
3,547,747	+		EFB2_03397	0.43	-0.1
3,547,748	-		EFB2_03397	0.43	-2.6
3,547,748	-		EFB2_03397	0.43	+0.7
3,547,748	-		EFB2_03397	0.43	-3.2
3,547,817	+		EFB2_03397	0.76	-1.4
3,547,818	-		EFB2_03397	0.77	-4.1
3,547,818	-		EFB2_03397	0.77	+1.9
3,547,818	-		EFB2_03397	0.77	-2.9
3,547,818	-		EFB2_03397	0.77	-1.3
3,547,832	+		EFB2_03397	0.84	-3.5
3,547,832	+		EFB2_03397	0.84	+1.9
3,547,832	+		EFB2_03397	0.84	-0.8
3,547,832	+		EFB2_03397	0.84	-0.7
3,547,847	-				-0.8
3,547,847	-				+0.7
3,547,847	-				-2.0
3,547,847	-				+0.8
3,547,847	-				+0.1
3,547,855	+				-0.0
3,547,855	+				-0.4
3,547,856	-				-2.4
3,547,866	-				+1.0
3,547,866	-				+0.6
3,547,884	+				-2.2
3,547,885	-				+0.3
3,547,888	+				-2.3
3,547,888	+				-0.2
3,547,889	-				-0.7
3,547,900	-				+0.1
3,547,923	+				-0.8
3,547,936	+				-0.0
3,547,936	+				-1.0
3,547,936	+				-4.4
3,547,936	+				-0.4
3,547,937	-				-0.3
3,547,937	-				-0.6
3,547,937	-				-3.7
3,547,940	-				+0.3
3,547,953	+				-1.5
3,547,960	-				-3.8
3,547,963	-				-1.5
3,547,978	+				+1.2
3,547,979	-				+0.2
3,547,988	+				+0.6
3,547,988	+				+0.8
3,547,988	+				-1.3
3,547,988	+				-0.8
3,547,989	-				+1.3
3,547,989	-				+1.4
3,547,989	-				+2.4
3,547,999	+				+1.8
3,547,999	+				-1.8
3,547,999	+				+1.9
3,547,999	+				-0.1
3,547,999	+				+0.7
3,547,999	+				+1.9
3,548,000	-				-2.3
3,548,000	-				+0.8
3,548,003	+				+0.4
3,548,003	+				+1.4
3,548,004	-				+0.6
3,548,004	-				+0.4
3,548,004	-				+0.2
3,548,004	-				+3.2
3,548,042	-				-0.4
3,548,055	-				-0.4
3,548,084	-				-1.9
3,548,093	-				-1.3
3,548,138	+				-0.5
3,548,159	-				-2.5
3,548,159	-				+2.3
3,548,159	-				+2.5
3,548,229	+				-1.7
3,548,229	+				-0.4
3,548,238	+				-0.4
3,548,238	+				-3.4
3,548,238	+				+0.9
3,548,238	+				+0.6
3,548,239	-				+0.9
3,548,286	+				+0.2
3,548,287	-				+1.4
3,548,305	-				-2.9
3,548,310	+				-3.2
3,548,310	+				+0.8
3,548,310	+				+0.5
3,548,310	+				+1.2
3,548,310	+				-1.9
3,548,310	+				+0.3
3,548,310	+				+1.0
3,548,311	-				-3.7
3,548,311	-				-0.9
3,548,311	-				-0.2
3,548,311	-				+0.9
3,548,313	+				+0.7
3,548,313	+				+5.2
3,548,313	+				-2.9
3,548,313	+				-1.8
3,548,313	+				+1.5
3,548,313	+				+0.9
3,548,314	-				+1.5
3,548,314	-				+1.0
3,548,314	-				-2.1
3,548,334	+				-0.3
3,548,334	+				+1.0
3,548,334	+				-2.8
3,548,335	-				-2.0
3,548,335	-				+0.7
3,548,335	-				-0.6
3,548,338	+				+0.1
3,548,359	+				-3.5
3,548,360	-				-3.4
3,548,360	-				+1.6
3,548,365	+				+0.9
3,548,365	+				+1.6
3,548,365	+				-2.2
3,548,365	+				-1.8
3,548,365	+				+0.7
3,548,365	+				+0.8
3,548,365	+				+0.2
3,548,365	+				-2.2
3,548,365	+				+0.9
3,548,365	+				+1.6
3,548,365	+				+1.3
3,548,366	-				+0.4
3,548,366	-				+1.0
3,548,366	-				-2.3
3,548,366	-				+2.0
3,548,366	-				-0.1
3,548,366	-				+0.8
3,548,366	-				-0.9
3,548,367	+				+1.8
3,548,367	+				+1.0
3,548,367	+				-0.2
3,548,367	+				-3.8
3,548,367	+				-0.6
3,548,367	+				+0.5
3,548,367	+				-1.2
3,548,367	+				+0.4
3,548,367	+				+0.5
3,548,367	+				-1.2
3,548,367	+				-1.0
3,548,367	+				-4.0
3,548,367	+				-1.1
3,548,367	+				-2.8
3,548,367	+				+1.8
3,548,367	+				+1.4
3,548,367	+				-1.6
3,548,367	+				-1.6
3,548,367	+				-3.8
3,548,367	+				-0.3
3,548,367	+				-0.0
3,548,367	+				+0.0
3,548,368	-				+0.7
3,548,368	-				+0.4
3,548,368	-				-0.9
3,548,368	-				+0.8
3,548,368	-				+0.2
3,548,368	-				-0.7
3,548,368	-				-2.3
3,548,368	-				+0.9
3,548,368	-				-0.4
3,548,368	-				+1.1
3,548,368	-				-0.0
3,548,368	-				-2.5
3,548,368	-				-0.0
3,548,368	-				-3.0
3,548,368	-				-0.5
3,548,368	-				-1.8
3,548,368	-				-1.0
3,548,368	-				+0.0
3,548,368	-				+1.8
3,548,368	-				-2.4
3,548,368	-				-1.5
3,548,368	-				+0.6
3,548,368	-				-1.0
3,548,368	-				+0.1
3,548,380	+				+0.1
3,548,381	-				+1.2
3,548,401	-				-0.3
3,548,450	+		EFB2_03398	0.11	+0.1
3,548,450	+		EFB2_03398	0.11	+1.8
3,548,450	+		EFB2_03398	0.11	-1.6
3,548,450	+		EFB2_03398	0.11	-1.9
3,548,450	+		EFB2_03398	0.11	-3.4
3,548,451	-		EFB2_03398	0.11	-2.7
3,548,451	-		EFB2_03398	0.11	-1.1
3,548,451	-		EFB2_03398	0.11	-0.0
3,548,451	-		EFB2_03398	0.11	-0.6
3,548,451	-		EFB2_03398	0.11	-0.6
3,548,451	-		EFB2_03398	0.11	-2.5
3,548,451	-		EFB2_03398	0.11	-2.2
3,548,476	+		EFB2_03398	0.12	-0.3
3,548,476	+		EFB2_03398	0.12	-1.7
3,548,476	+		EFB2_03398	0.12	-2.3
3,548,476	+		EFB2_03398	0.12	-1.5
3,548,476	+		EFB2_03398	0.12	-0.0
3,548,476	+		EFB2_03398	0.12	-1.9
3,548,476	+		EFB2_03398	0.12	+0.5
3,548,476	+		EFB2_03398	0.12	-0.3
3,548,477	-		EFB2_03398	0.13	+0.9
3,548,477	-		EFB2_03398	0.13	-1.3
3,548,477	-		EFB2_03398	0.13	+0.4
3,548,477	-		EFB2_03398	0.13	+0.4
3,548,477	-		EFB2_03398	0.13	+1.8
3,548,477	-		EFB2_03398	0.13	+1.0
3,548,477	-		EFB2_03398	0.13	+1.9
3,548,478	+		EFB2_03398	0.13	-3.6
3,548,478	+		EFB2_03398	0.13	-0.4
3,548,478	+		EFB2_03398	0.13	+0.5
3,548,478	+		EFB2_03398	0.13	+1.1
3,548,478	+		EFB2_03398	0.13	-0.2
3,548,478	+		EFB2_03398	0.13	-1.3
3,548,478	+		EFB2_03398	0.13	-0.5
3,548,478	+		EFB2_03398	0.13	-2.3
3,548,478	+		EFB2_03398	0.13	+2.3
3,548,478	+		EFB2_03398	0.13	+1.8
3,548,479	-		EFB2_03398	0.13	-1.6
3,548,479	-		EFB2_03398	0.13	-0.3
3,548,479	-		EFB2_03398	0.13	+0.8
3,548,479	-		EFB2_03398	0.13	-1.0
3,548,479	-		EFB2_03398	0.13	+0.6
3,548,479	-		EFB2_03398	0.13	+3.7
3,548,503	+		EFB2_03398	0.14	+1.5
3,548,503	+		EFB2_03398	0.14	-0.9
3,548,504	-		EFB2_03398	0.14	-2.0
3,548,504	-		EFB2_03398	0.14	+2.5
3,548,522	+		EFB2_03398	0.15	+1.6
3,548,522	+		EFB2_03398	0.15	+1.0
3,548,522	+		EFB2_03398	0.15	-0.9
3,548,522	+		EFB2_03398	0.15	+0.3
3,548,522	+		EFB2_03398	0.15	-1.3
3,548,523	-		EFB2_03398	0.15	+1.4
3,548,523	-		EFB2_03398	0.15	-1.3
3,548,523	-		EFB2_03398	0.15	+2.9
3,548,523	-		EFB2_03398	0.15	-0.4
3,548,523	-		EFB2_03398	0.15	-1.2
3,548,523	-		EFB2_03398	0.15	+1.6
3,548,523	-		EFB2_03398	0.15	+0.3
3,548,534	-		EFB2_03398	0.16	+0.8
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