Strain Fitness in Escherichia fergusonii Becca around EFB2_03350

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,505,812	-		EFB2_03349	0.16	-3.3
3,505,836	+		EFB2_03349	0.18	-0.8
3,505,837	-		EFB2_03349	0.18	-2.4
3,505,893	+		EFB2_03349	0.23	+1.2
3,505,893	+		EFB2_03349	0.23	+1.5
3,505,893	+		EFB2_03349	0.23	-0.7
3,505,893	+		EFB2_03349	0.23	+1.2
3,505,893	+		EFB2_03349	0.23	-1.6
3,505,893	+		EFB2_03349	0.23	-0.6
3,505,893	+		EFB2_03349	0.23	+1.7
3,505,893	+		EFB2_03349	0.23	+0.5
3,505,894	-		EFB2_03349	0.23	+0.2
3,505,894	-		EFB2_03349	0.23	+1.6
3,505,904	+		EFB2_03349	0.24	+1.2
3,505,904	+		EFB2_03349	0.24	-0.5
3,505,904	+		EFB2_03349	0.24	-0.1
3,505,904	+		EFB2_03349	0.24	-2.4
3,505,904	+		EFB2_03349	0.24	+1.4
3,505,905	-		EFB2_03349	0.24	+2.3
3,505,905	-		EFB2_03349	0.24	+1.9
3,505,908	+		EFB2_03349	0.25	+0.8
3,505,908	+		EFB2_03349	0.25	+2.3
3,505,908	+		EFB2_03349	0.25	-1.4
3,505,908	+		EFB2_03349	0.25	+1.4
3,505,908	+		EFB2_03349	0.25	-0.8
3,505,908	+		EFB2_03349	0.25	-2.5
3,505,908	+		EFB2_03349	0.25	-1.0
3,505,908	+		EFB2_03349	0.25	-2.0
3,505,908	+		EFB2_03349	0.25	-1.4
3,505,908	+		EFB2_03349	0.25	+1.1
3,505,908	+		EFB2_03349	0.25	-0.1
3,505,908	+		EFB2_03349	0.25	-0.6
3,505,908	+		EFB2_03349	0.25	+1.5
3,505,908	+		EFB2_03349	0.25	+0.6
3,505,908	+		EFB2_03349	0.25	+1.8
3,505,908	+		EFB2_03349	0.25	+0.5
3,505,908	+		EFB2_03349	0.25	-2.8
3,505,908	+		EFB2_03349	0.25	-2.4
3,505,908	+		EFB2_03349	0.25	-2.0
3,505,909	-		EFB2_03349	0.25	+2.9
3,505,909	-		EFB2_03349	0.25	-2.0
3,505,909	-		EFB2_03349	0.25	+0.5
3,505,909	-		EFB2_03349	0.25	-1.6
3,505,909	-		EFB2_03349	0.25	+2.0
3,505,909	-		EFB2_03349	0.25	+0.9
3,505,909	-		EFB2_03349	0.25	-2.1
3,505,909	-		EFB2_03349	0.25	-2.1
3,505,909	-		EFB2_03349	0.25	-1.5
3,505,909	-		EFB2_03349	0.25	+0.8
3,505,909	-		EFB2_03349	0.25	+1.0
3,505,909	-		EFB2_03349	0.25	-1.6
3,505,909	-		EFB2_03349	0.25	-0.0
3,505,944	-		EFB2_03349	0.28	-0.2
3,505,944	-		EFB2_03349	0.28	+1.6
3,506,005	+		EFB2_03349	0.33	+0.2
3,506,005	+		EFB2_03349	0.33	-1.0
3,506,005	+		EFB2_03349	0.33	+2.6
3,506,005	+		EFB2_03349	0.33	-2.4
3,506,006	-		EFB2_03349	0.33	+1.4
3,506,006	-		EFB2_03349	0.33	-0.2
3,506,045	-		EFB2_03349	0.36	-1.0
3,506,045	-		EFB2_03349	0.36	+1.7
3,506,058	+		EFB2_03349	0.38	+0.3
3,506,058	+		EFB2_03349	0.38	-1.0
3,506,058	+		EFB2_03349	0.38	+2.1
3,506,059	-		EFB2_03349	0.38	-1.7
3,506,093	+		EFB2_03349	0.41	-3.8
3,506,093	+		EFB2_03349	0.41	-2.6
3,506,094	-		EFB2_03349	0.41	+0.0
3,506,094	-		EFB2_03349	0.41	-1.3
3,506,122	+		EFB2_03349	0.43	+2.6
3,506,129	+		EFB2_03349	0.44	+0.5
3,506,129	+		EFB2_03349	0.44	+0.4
3,506,129	+		EFB2_03349	0.44	+2.2
3,506,130	-		EFB2_03349	0.44	-1.8
3,506,130	-		EFB2_03349	0.44	+1.6
3,506,130	-		EFB2_03349	0.44	+0.2
3,506,261	+		EFB2_03349	0.55	+1.7
3,506,261	+		EFB2_03349	0.55	-2.7
3,506,262	-		EFB2_03349	0.55	+1.2
3,506,273	+		EFB2_03349	0.56	+0.6
3,506,273	+		EFB2_03349	0.56	-2.0
3,506,274	-		EFB2_03349	0.56	+0.9
3,506,274	-		EFB2_03349	0.56	+0.9
3,506,274	-		EFB2_03349	0.56	+1.8
3,506,292	+		EFB2_03349	0.58	-0.0
3,506,292	+		EFB2_03349	0.58	+0.2
3,506,292	+		EFB2_03349	0.58	-0.1
3,506,293	-		EFB2_03349	0.58	+2.1
3,506,293	-		EFB2_03349	0.58	+0.8
3,506,293	-		EFB2_03349	0.58	+1.3
3,506,293	-		EFB2_03349	0.58	-1.8
3,506,492	+		EFB2_03349	0.75	+1.4
3,506,492	+		EFB2_03349	0.75	-0.1
3,506,492	+		EFB2_03349	0.75	+0.5
3,506,492	+		EFB2_03349	0.75	+1.8
3,506,493	-		EFB2_03349	0.75	-1.4
3,506,493	-		EFB2_03349	0.75	-1.9
3,506,493	-		EFB2_03349	0.75	-0.9
3,506,525	+		EFB2_03349	0.78	-1.0
3,506,525	+		EFB2_03349	0.78	+1.1
3,506,525	+		EFB2_03349	0.78	+0.6
3,506,526	-		EFB2_03349	0.78	+1.0
3,506,611	+		EFB2_03349	0.86	-3.6
3,506,611	+		EFB2_03349	0.86	+0.8
3,506,612	-		EFB2_03349	0.86	-0.2
3,506,703	+				-3.1
3,506,703	+				-0.5
3,506,703	+				-0.6
3,506,703	+				+2.6
3,506,720	+				-2.6
3,506,721	-				+0.4
3,506,721	-				-0.8
3,506,724	-				-1.5
3,506,736	+				+1.3
3,506,737	-				-2.0
3,506,744	+				+0.1
3,506,745	-				-2.0
3,506,820	+				-0.5
3,506,821	-				+1.5
3,506,847	+				+1.1
3,506,847	+				-0.6
3,506,848	-				+3.8
3,506,877	+		EFB2_03350	0.10	+4.6
3,506,878	-		EFB2_03350	0.11	-1.0
3,506,878	-		EFB2_03350	0.11	-2.5
3,506,878	-		EFB2_03350	0.11	-0.4
3,506,890	+		EFB2_03350	0.12	-1.3
3,506,951	+		EFB2_03350	0.18	-1.2
3,506,952	-		EFB2_03350	0.18	-1.2
3,506,952	-		EFB2_03350	0.18	-1.1
3,506,983	+		EFB2_03350	0.21	+1.4
3,506,983	+		EFB2_03350	0.21	-1.3
3,506,984	-		EFB2_03350	0.21	-2.2
3,506,984	-		EFB2_03350	0.21	-0.2
3,506,984	-		EFB2_03350	0.21	-2.0
3,506,984	-		EFB2_03350	0.21	-0.3
3,506,994	-		EFB2_03350	0.22	+1.6
3,507,013	+		EFB2_03350	0.24	-2.0
3,507,021	-		EFB2_03350	0.24	-0.8
3,507,022	+		EFB2_03350	0.24	-2.2
3,507,022	+		EFB2_03350	0.24	-0.9
3,507,022	+		EFB2_03350	0.24	-0.2
3,507,022	+		EFB2_03350	0.24	-0.3
3,507,022	+		EFB2_03350	0.24	-3.1
3,507,022	+		EFB2_03350	0.24	-1.2
3,507,022	+		EFB2_03350	0.24	+0.4
3,507,022	+		EFB2_03350	0.24	-2.3
3,507,022	+		EFB2_03350	0.24	-2.0
3,507,023	-		EFB2_03350	0.24	-2.4
3,507,023	-		EFB2_03350	0.24	+1.3
3,507,023	-		EFB2_03350	0.24	+1.1
3,507,023	-		EFB2_03350	0.24	-4.0
3,507,023	-		EFB2_03350	0.24	+1.3
3,507,023	-		EFB2_03350	0.24	-0.6
3,507,023	-		EFB2_03350	0.24	-1.9
3,507,023	-		EFB2_03350	0.24	-0.4
3,507,232	+		EFB2_03350	0.45	+2.1
3,507,232	+		EFB2_03350	0.45	+1.8
3,507,232	+		EFB2_03350	0.45	+0.8
3,507,232	+		EFB2_03350	0.45	+1.7
3,507,232	+		EFB2_03350	0.45	-1.0
3,507,232	+		EFB2_03350	0.45	-0.4
3,507,232	+		EFB2_03350	0.45	+0.3
3,507,232	+		EFB2_03350	0.45	+2.0
3,507,232	+		EFB2_03350	0.45	+1.2
3,507,232	+		EFB2_03350	0.45	+1.8
3,507,232	+		EFB2_03350	0.45	+0.4
3,507,233	-		EFB2_03350	0.45	-3.2
3,507,233	-		EFB2_03350	0.45	-1.9
3,507,233	-		EFB2_03350	0.45	-0.6
3,507,233	-		EFB2_03350	0.45	-0.2
3,507,233	-		EFB2_03350	0.45	+0.0
3,507,233	-		EFB2_03350	0.45	+0.8
3,507,233	-		EFB2_03350	0.45	+0.6
3,507,241	+		EFB2_03350	0.45	+1.2
3,507,241	+		EFB2_03350	0.45	+1.5
3,507,241	+		EFB2_03350	0.45	-1.2
3,507,241	+		EFB2_03350	0.45	+0.3
3,507,241	+		EFB2_03350	0.45	+0.2
3,507,241	+		EFB2_03350	0.45	-3.7
3,507,241	+		EFB2_03350	0.45	-0.8
3,507,242	-		EFB2_03350	0.46	-0.8
3,507,242	-		EFB2_03350	0.46	+0.2
3,507,242	-		EFB2_03350	0.46	-1.8
3,507,242	-		EFB2_03350	0.46	+1.2
3,507,242	-		EFB2_03350	0.46	-0.9
3,507,242	-		EFB2_03350	0.46	-1.6
3,507,242	-		EFB2_03350	0.46	-3.1
3,507,242	-		EFB2_03350	0.46	+0.4
3,507,242	-		EFB2_03350	0.46	-2.7
3,507,242	-		EFB2_03350	0.46	-0.1
3,507,242	-		EFB2_03350	0.46	+2.2
3,507,242	-		EFB2_03350	0.46	+1.6
3,507,242	-		EFB2_03350	0.46	-2.0
3,507,245	+		EFB2_03350	0.46	+2.0
3,507,245	+		EFB2_03350	0.46	-1.3
3,507,246	-		EFB2_03350	0.46	+2.0
3,507,262	+		EFB2_03350	0.47	+1.3
3,507,262	+		EFB2_03350	0.47	+2.2
3,507,262	+		EFB2_03350	0.47	+1.5
3,507,263	-		EFB2_03350	0.48	+2.5
3,507,280	+		EFB2_03350	0.49	-0.5
3,507,280	+		EFB2_03350	0.49	-1.0
3,507,280	+		EFB2_03350	0.49	-2.2
3,507,280	+		EFB2_03350	0.49	+1.3
3,507,280	+		EFB2_03350	0.49	+0.4
3,507,280	+		EFB2_03350	0.49	-0.9
3,507,280	+		EFB2_03350	0.49	-0.1
3,507,281	-		EFB2_03350	0.49	-1.5
3,507,281	-		EFB2_03350	0.49	+2.1
3,507,281	-		EFB2_03350	0.49	+2.2
3,507,281	-		EFB2_03350	0.49	+1.3
3,507,281	-		EFB2_03350	0.49	-1.8
3,507,281	-		EFB2_03350	0.49	-2.1
3,507,286	+		EFB2_03350	0.50	-1.1
3,507,286	+		EFB2_03350	0.50	-1.9
3,507,286	+		EFB2_03350	0.50	-0.5
3,507,286	+		EFB2_03350	0.50	+1.5
3,507,286	+		EFB2_03350	0.50	-0.2
3,507,286	+		EFB2_03350	0.50	-1.9
3,507,287	-		EFB2_03350	0.50	-0.5
3,507,287	-		EFB2_03350	0.50	-2.3
3,507,296	+		EFB2_03350	0.51	-0.5
3,507,296	+		EFB2_03350	0.51	-3.1
3,507,296	+		EFB2_03350	0.51	-0.8
3,507,296	+		EFB2_03350	0.51	-1.1
3,507,297	-		EFB2_03350	0.51	+1.5
3,507,362	+		EFB2_03350	0.57	-2.5
3,507,362	+		EFB2_03350	0.57	+0.2
3,507,362	+		EFB2_03350	0.57	-1.8
3,507,362	+		EFB2_03350	0.57	+1.3
3,507,362	+		EFB2_03350	0.57	-2.9
3,507,363	-		EFB2_03350	0.57	-3.2
3,507,363	-		EFB2_03350	0.57	-1.5
3,507,363	-		EFB2_03350	0.57	+1.6
3,507,497	+		EFB2_03350	0.70	+1.8
3,507,497	+		EFB2_03350	0.70	-3.6
3,507,498	-		EFB2_03350	0.70	-2.9
3,507,498	-		EFB2_03350	0.70	+0.9
3,507,498	-		EFB2_03350	0.70	-2.3
3,507,498	-		EFB2_03350	0.70	-2.3
3,507,516	+		EFB2_03350	0.72	-1.6
3,507,590	+		EFB2_03350	0.79	+0.1
3,507,590	+		EFB2_03350	0.79	+1.6
3,507,590	+		EFB2_03350	0.79	-1.6
3,507,591	-		EFB2_03350	0.79	+1.7
3,507,591	-		EFB2_03350	0.79	+0.6
3,507,617	+		EFB2_03350	0.82	-2.1
3,507,665	+		EFB2_03350	0.86	+0.1
3,507,665	+		EFB2_03350	0.86	-3.0
3,507,665	+		EFB2_03350	0.86	+0.9
3,507,666	-		EFB2_03350	0.86	-0.8
3,507,666	-		EFB2_03350	0.86	-0.1
3,507,666	-		EFB2_03350	0.86	+0.6
3,507,666	-		EFB2_03350	0.86	+1.9
3,507,770	+				-3.2
3,507,770	+				-0.8
3,507,770	+				-2.7
3,507,770	+				-3.1
3,507,770	+				+1.7
3,507,771	-				+0.2
3,507,771	-				-2.7
3,507,788	+				+0.1
3,507,788	+				-0.8
3,507,789	-				+0.1
3,507,796	+				-0.6
3,507,796	+				-3.1
3,507,797	-				-2.3
3,507,797	-				-1.2
3,507,797	-				-3.5
3,507,806	+				-0.4
3,507,806	+				+0.9
3,507,807	-				+0.6
3,507,812	+				+0.1
3,507,812	+				-1.3
3,507,812	+				-0.2
3,507,835	-				-1.2
3,507,835	-				-0.1
3,507,842	+				-0.1
3,507,842	+				-0.2
3,507,842	+				-0.6
3,507,842	+				-2.0
3,507,842	+				-0.9
3,507,842	+				-2.3
3,507,842	+				-3.4
3,507,842	+				+0.4
3,507,842	+				-3.2
3,507,842	+				-0.9
3,507,843	-				-2.1
3,507,843	-				-3.1
3,507,843	-				+1.6
3,507,843	-				-1.1
3,507,843	-				-0.2
3,507,843	-				-1.9
3,507,843	-				-3.5
3,507,843	-				-0.5
3,507,843	-				+2.3
3,507,843	-				-0.0
3,507,843	-				-0.3
3,507,843	-				-0.4
3,507,843	-				-2.8
3,507,843	-				-0.1
3,507,843	-				+0.4
3,507,872	+				-0.2
3,507,872	+				+1.0
3,507,872	+				-1.6
3,507,872	+				+0.9
3,507,873	-				+1.2
3,507,873	-				-0.4
3,507,873	-				-1.1
3,507,886	+				-1.2
3,507,887	-				-0.9
3,507,887	-				-0.9
3,507,901	+				+0.6
3,507,901	+				-0.6
3,507,901	+				-2.6
3,507,901	+				+0.8
3,507,902	-				-2.3
3,507,902	-				-0.4
3,507,915	-				+1.3
3,507,915	-				-3.0
3,507,929	+				+3.9
3,507,935	+				-1.2
3,507,936	-				+0.7
3,507,936	-				+0.2
3,507,936	-				-1.1
3,507,936	-				-2.0
3,507,964	+				+0.2
3,507,965	-				-0.6
3,507,976	+				+0.8
3,507,977	-				+1.6
3,507,985	+				-3.7
3,507,985	+				+0.3
3,507,985	+				-0.0
3,507,985	+				+0.6
3,508,004	+				+0.7
3,508,004	+				-0.1
3,508,004	+				+1.4
3,508,004	+				-1.7
3,508,004	+				-3.6
3,508,004	+				-0.8
3,508,004	+				-0.4
3,508,004	+				-0.8
3,508,004	+				+0.8
3,508,004	+				+0.1
3,508,004	+				-0.0
3,508,004	+				+1.8
3,508,004	+				-0.4
3,508,004	+				+0.6
3,508,004	+				+3.6
3,508,004	+				-4.1
3,508,004	+				+3.2
3,508,004	+				-2.8
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