Strain Fitness in Escherichia fergusonii Becca around EFB2_03210

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,368,421	+				-1.2
3,368,436	+				+1.3
3,368,436	+				-2.0
3,368,457	+				+3.5
3,368,457	+				+0.2
3,368,458	-				-0.4
3,368,467	+				-0.2
3,368,468	-				+0.2
3,368,529	-		EFB2_03209	0.10	+1.1
3,368,581	+		EFB2_03209	0.16	-0.4
3,368,581	+		EFB2_03209	0.16	+2.2
3,368,582	-		EFB2_03209	0.16	+1.8
3,368,594	-		EFB2_03209	0.18	+0.2
3,368,637	-		EFB2_03209	0.22	-1.2
3,368,665	+		EFB2_03209	0.25	-3.0
3,368,747	+		EFB2_03209	0.35	-1.5
3,368,747	+		EFB2_03209	0.35	-2.2
3,368,747	+		EFB2_03209	0.35	+1.8
3,368,747	+		EFB2_03209	0.35	-2.9
3,368,747	+		EFB2_03209	0.35	+2.6
3,368,747	+		EFB2_03209	0.35	+1.4
3,368,748	-		EFB2_03209	0.35	-0.7
3,368,748	-		EFB2_03209	0.35	-0.9
3,368,748	-		EFB2_03209	0.35	+1.5
3,368,800	+		EFB2_03209	0.40	+1.6
3,368,800	+		EFB2_03209	0.40	-2.1
3,368,800	+		EFB2_03209	0.40	-0.4
3,368,800	+		EFB2_03209	0.40	-1.1
3,368,800	+		EFB2_03209	0.40	+1.8
3,368,800	+		EFB2_03209	0.40	-2.0
3,368,800	+		EFB2_03209	0.40	+0.7
3,368,800	+		EFB2_03209	0.40	-0.6
3,368,801	-		EFB2_03209	0.41	+2.6
3,368,801	-		EFB2_03209	0.41	+0.9
3,368,801	-		EFB2_03209	0.41	-0.2
3,368,801	-		EFB2_03209	0.41	-0.6
3,368,801	-		EFB2_03209	0.41	-0.5
3,368,801	-		EFB2_03209	0.41	-0.1
3,368,801	-		EFB2_03209	0.41	+1.0
3,368,801	-		EFB2_03209	0.41	+0.3
3,368,802	+		EFB2_03209	0.41	-1.6
3,368,802	+		EFB2_03209	0.41	+0.8
3,368,802	+		EFB2_03209	0.41	-0.6
3,368,802	+		EFB2_03209	0.41	-0.7
3,368,802	+		EFB2_03209	0.41	+1.3
3,368,802	+		EFB2_03209	0.41	-0.5
3,368,802	+		EFB2_03209	0.41	-2.2
3,368,802	+		EFB2_03209	0.41	+1.5
3,368,802	+		EFB2_03209	0.41	+2.1
3,368,803	-		EFB2_03209	0.41	-1.9
3,368,803	-		EFB2_03209	0.41	+0.2
3,368,803	-		EFB2_03209	0.41	+0.6
3,368,803	-		EFB2_03209	0.41	-0.9
3,368,803	-		EFB2_03209	0.41	+2.8
3,368,803	-		EFB2_03209	0.41	-1.1
3,368,803	-		EFB2_03209	0.41	-3.5
3,368,803	-		EFB2_03209	0.41	+2.4
3,368,803	-		EFB2_03209	0.41	-0.7
3,368,803	-		EFB2_03209	0.41	-2.4
3,368,803	-		EFB2_03209	0.41	-2.5
3,368,818	+		EFB2_03209	0.42	+2.6
3,368,818	+		EFB2_03209	0.42	-0.7
3,368,818	+		EFB2_03209	0.42	-2.1
3,368,818	+		EFB2_03209	0.42	-3.1
3,368,818	+		EFB2_03209	0.42	-2.7
3,368,818	+		EFB2_03209	0.42	-1.0
3,368,819	-		EFB2_03209	0.43	+1.6
3,368,819	-		EFB2_03209	0.43	+2.8
3,368,819	-		EFB2_03209	0.43	+1.3
3,368,819	-		EFB2_03209	0.43	+0.6
3,368,952	-		EFB2_03209	0.57	-1.3
3,368,962	+		EFB2_03209	0.58	+0.5
3,369,081	+		EFB2_03209	0.72	+2.8
3,369,082	-		EFB2_03209	0.72	-0.8
3,369,123	+		EFB2_03209	0.76	-1.5
3,369,123	+		EFB2_03209	0.76	-0.7
3,369,124	-		EFB2_03209	0.76	-1.0
3,369,130	+		EFB2_03209	0.77	-1.2
3,369,130	+		EFB2_03209	0.77	+0.3
3,369,145	+		EFB2_03209	0.79	+2.3
3,369,173	+		EFB2_03209	0.82	-0.3
3,369,189	+		EFB2_03209	0.83	+1.1
3,369,189	+		EFB2_03209	0.83	-1.0
3,369,189	+		EFB2_03209	0.83	-0.2
3,369,189	+		EFB2_03209	0.83	-0.6
3,369,189	+		EFB2_03209	0.83	-0.6
3,369,190	-		EFB2_03209	0.84	-0.0
3,369,196	+		EFB2_03209	0.84	+2.3
3,369,196	+		EFB2_03209	0.84	+1.1
3,369,196	+		EFB2_03209	0.84	+0.3
3,369,196	+		EFB2_03209	0.84	-1.3
3,369,196	+		EFB2_03209	0.84	+0.6
3,369,197	-		EFB2_03209	0.84	-0.0
3,369,197	-		EFB2_03209	0.84	-2.9
3,369,197	-		EFB2_03209	0.84	+0.9
3,369,197	-		EFB2_03209	0.84	+1.0
3,369,197	-		EFB2_03209	0.84	-0.6
3,369,197	-		EFB2_03209	0.84	-0.4
3,369,197	-		EFB2_03209	0.84	+0.3
3,369,197	-		EFB2_03209	0.84	+1.1
3,369,197	-		EFB2_03209	0.84	+1.8
3,369,197	-		EFB2_03209	0.84	+0.1
3,369,197	-		EFB2_03209	0.84	+0.1
3,369,215	+		EFB2_03209	0.86	-0.4
3,369,215	+		EFB2_03209	0.86	-1.3
3,369,215	+		EFB2_03209	0.86	-0.6
3,369,215	+		EFB2_03209	0.86	+0.3
3,369,215	+		EFB2_03209	0.86	+3.5
3,369,215	+		EFB2_03209	0.86	-0.7
3,369,216	-		EFB2_03209	0.86	-3.8
3,369,216	-		EFB2_03209	0.86	+2.1
3,369,216	-		EFB2_03209	0.86	-2.7
3,369,216	-		EFB2_03209	0.86	+0.2
3,369,216	-		EFB2_03209	0.86	+2.4
3,369,216	-		EFB2_03209	0.86	-0.7
3,369,216	-		EFB2_03209	0.86	-1.4
3,369,216	-		EFB2_03209	0.86	+1.6
3,369,225	+		EFB2_03209	0.87	-2.2
3,369,225	+		EFB2_03209	0.87	+0.3
3,369,225	+		EFB2_03209	0.87	+0.2
3,369,225	+		EFB2_03209	0.87	+0.1
3,369,225	+		EFB2_03209	0.87	-0.8
3,369,225	+		EFB2_03209	0.87	-0.7
3,369,225	+		EFB2_03209	0.87	-0.8
3,369,225	+		EFB2_03209	0.87	-2.8
3,369,225	+		EFB2_03209	0.87	-1.3
3,369,225	+		EFB2_03209	0.87	-0.5
3,369,226	-		EFB2_03209	0.88	-2.1
3,369,226	-		EFB2_03209	0.88	-1.1
3,369,226	-		EFB2_03209	0.88	+1.3
3,369,226	-		EFB2_03209	0.88	+0.9
3,369,226	-		EFB2_03209	0.88	-0.1
3,369,226	-		EFB2_03209	0.88	-1.8
3,369,226	-		EFB2_03209	0.88	-3.2
3,369,226	-		EFB2_03209	0.88	-2.8
3,369,226	-		EFB2_03209	0.88	-3.3
3,369,226	-		EFB2_03209	0.88	-1.1
3,369,269	+				-2.3
3,369,269	+				+2.2
3,369,269	+				+1.4
3,369,269	+				-4.4
3,369,269	+				-0.0
3,369,269	+				+1.7
3,369,269	+				+0.7
3,369,270	-				-1.4
3,369,270	-				+1.0
3,369,270	-				-1.2
3,369,270	-				+1.2
3,369,270	-				-2.2
3,369,270	-				+1.9
3,369,270	-				+1.2
3,369,270	-				-1.0
3,369,270	-				-1.4
3,369,270	-				+0.3
3,369,270	-				-1.7
3,369,270	-				+1.3
3,369,270	-				-3.1
3,369,270	-				+1.1
3,369,272	-				-2.3
3,369,292	+				-2.3
3,369,292	+				-2.2
3,369,293	-				+2.2
3,369,300	+				-3.3
3,369,300	+				-1.1
3,369,300	+				-0.6
3,369,301	-				+1.0
3,369,301	-				+0.7
3,369,323	+				-1.4
3,369,324	-				+0.5
3,369,375	+				-3.8
3,369,375	+				+1.8
3,369,375	+				-0.1
3,369,375	+				-0.6
3,369,376	-				+0.3
3,369,376	-				-3.8
3,369,376	-				+1.0
3,369,380	+				-1.7
3,369,380	+				+0.6
3,369,380	+				-1.9
3,369,380	+				-2.3
3,369,380	+				+1.0
3,369,380	+				-0.5
3,369,380	+				+0.5
3,369,380	+				-1.9
3,369,380	+				+0.8
3,369,380	+				-0.1
3,369,380	+				+1.1
3,369,381	-				+0.1
3,369,381	-				+0.8
3,369,381	-				-0.5
3,369,381	-				+1.0
3,369,381	-				-0.3
3,369,381	-				-0.9
3,369,400	-				-1.2
3,369,400	-				+1.0
3,369,429	+				-2.9
3,369,429	+				+1.0
3,369,430	-				+0.0
3,369,430	-				+0.2
3,369,430	-				+1.4
3,369,430	-				+0.8
3,369,430	-				-0.2
3,369,430	-				+1.9
3,369,439	+				-1.1
3,369,439	+				-2.1
3,369,439	+				+1.5
3,369,440	-				+2.8
3,369,440	-				+0.4
3,369,440	-				+0.2
3,369,440	-				+1.9
3,369,440	-				+0.3
3,369,476	-		EFB2_03210	0.11	-0.5
3,369,476	-		EFB2_03210	0.11	+2.5
3,369,476	-		EFB2_03210	0.11	-2.7
3,369,503	-		EFB2_03210	0.15	-1.1
3,369,522	+		EFB2_03210	0.17	+1.5
3,369,522	+		EFB2_03210	0.17	+0.2
3,369,522	+		EFB2_03210	0.17	+2.1
3,369,523	-		EFB2_03210	0.17	-0.0
3,369,523	-		EFB2_03210	0.17	+0.1
3,369,523	-		EFB2_03210	0.17	+1.1
3,369,523	-		EFB2_03210	0.17	-0.7
3,369,523	-		EFB2_03210	0.17	-0.0
3,369,523	-		EFB2_03210	0.17	+1.5
3,369,523	-		EFB2_03210	0.17	+0.3
3,369,523	-		EFB2_03210	0.17	+1.3
3,369,525	+		EFB2_03210	0.18	+2.6
3,369,525	+		EFB2_03210	0.18	-1.7
3,369,525	+		EFB2_03210	0.18	+0.3
3,369,526	-		EFB2_03210	0.18	+1.8
3,369,547	-		EFB2_03210	0.21	-1.0
3,369,547	-		EFB2_03210	0.21	-0.7
3,369,579	+		EFB2_03210	0.25	-0.1
3,369,579	+		EFB2_03210	0.25	-2.5
3,369,579	+		EFB2_03210	0.25	-0.1
3,369,579	+		EFB2_03210	0.25	+1.0
3,369,579	+		EFB2_03210	0.25	-1.1
3,369,579	+		EFB2_03210	0.25	-0.9
3,369,579	+		EFB2_03210	0.25	+2.1
3,369,579	+		EFB2_03210	0.25	+1.1
3,369,579	+		EFB2_03210	0.25	+0.5
3,369,580	-		EFB2_03210	0.25	-2.5
3,369,580	-		EFB2_03210	0.25	-1.0
3,369,580	-		EFB2_03210	0.25	+0.3
3,369,622	+		EFB2_03210	0.31	+1.0
3,369,623	-		EFB2_03210	0.31	+0.0
3,369,623	-		EFB2_03210	0.31	-3.8
3,369,623	-		EFB2_03210	0.31	+1.3
3,369,623	-		EFB2_03210	0.31	+1.4
3,369,623	-		EFB2_03210	0.31	+0.2
3,369,623	-		EFB2_03210	0.31	-3.5
3,369,715	+		EFB2_03210	0.44	-1.9
3,369,716	-		EFB2_03210	0.44	+0.5
3,369,716	-		EFB2_03210	0.44	-0.3
3,369,716	-		EFB2_03210	0.44	-1.6
3,369,716	-		EFB2_03210	0.44	-1.2
3,369,719	-		EFB2_03210	0.44	+0.1
3,369,736	+		EFB2_03210	0.47	+0.9
3,369,736	+		EFB2_03210	0.47	-1.1
3,369,736	+		EFB2_03210	0.47	-0.7
3,369,736	+		EFB2_03210	0.47	-1.0
3,369,736	+		EFB2_03210	0.47	+1.2
3,369,736	+		EFB2_03210	0.47	-1.7
3,369,736	+		EFB2_03210	0.47	+2.7
3,369,736	+		EFB2_03210	0.47	+1.0
3,369,736	+		EFB2_03210	0.47	-0.5
3,369,737	-		EFB2_03210	0.47	-0.2
3,369,737	-		EFB2_03210	0.47	+0.6
3,369,737	-		EFB2_03210	0.47	+1.5
3,369,737	-		EFB2_03210	0.47	+1.2
3,369,737	-		EFB2_03210	0.47	+0.2
3,369,738	+		EFB2_03210	0.47	+0.2
3,369,738	+		EFB2_03210	0.47	+1.1
3,369,738	+		EFB2_03210	0.47	+2.3
3,369,738	+		EFB2_03210	0.47	-1.1
3,369,738	+		EFB2_03210	0.47	-3.2
3,369,738	+		EFB2_03210	0.47	+0.6
3,369,738	+		EFB2_03210	0.47	+0.6
3,369,738	+		EFB2_03210	0.47	-1.7
3,369,738	+		EFB2_03210	0.47	+3.0
3,369,738	+		EFB2_03210	0.47	+1.5
3,369,738	+		EFB2_03210	0.47	-0.9
3,369,738	+		EFB2_03210	0.47	-0.9
3,369,738	+		EFB2_03210	0.47	+2.1
3,369,738	+		EFB2_03210	0.47	+1.1
3,369,738	+		EFB2_03210	0.47	+0.8
3,369,738	+		EFB2_03210	0.47	-0.3
3,369,738	+		EFB2_03210	0.47	+0.3
3,369,738	+		EFB2_03210	0.47	-1.5
3,369,738	+		EFB2_03210	0.47	-0.5
3,369,738	+		EFB2_03210	0.47	+1.4
3,369,738	+		EFB2_03210	0.47	-2.2
3,369,738	+		EFB2_03210	0.47	+0.6
3,369,738	+		EFB2_03210	0.47	-0.9
3,369,739	-		EFB2_03210	0.47	+1.1
3,369,739	-		EFB2_03210	0.47	-0.0
3,369,739	-		EFB2_03210	0.47	-1.7
3,369,739	-		EFB2_03210	0.47	-3.2
3,369,739	-		EFB2_03210	0.47	+1.7
3,369,739	-		EFB2_03210	0.47	-3.6
3,369,739	-		EFB2_03210	0.47	+0.6
3,369,739	-		EFB2_03210	0.47	-1.3
3,369,739	-		EFB2_03210	0.47	+0.6
3,369,739	-		EFB2_03210	0.47	+1.3
3,369,739	-		EFB2_03210	0.47	-0.5
3,369,739	-		EFB2_03210	0.47	-0.7
3,369,739	-		EFB2_03210	0.47	-0.7
3,369,739	-		EFB2_03210	0.47	+2.8
3,369,739	-		EFB2_03210	0.47	-3.4
3,369,739	-		EFB2_03210	0.47	+0.5
3,369,739	-		EFB2_03210	0.47	-3.3
3,369,739	-		EFB2_03210	0.47	-0.3
3,369,739	-		EFB2_03210	0.47	-1.8
3,369,739	-		EFB2_03210	0.47	+2.0
3,369,739	-		EFB2_03210	0.47	-0.7
3,369,739	-		EFB2_03210	0.47	-2.0
3,369,739	-		EFB2_03210	0.47	-2.2
3,369,739	-		EFB2_03210	0.47	+0.1
3,369,739	-		EFB2_03210	0.47	+3.3
3,369,739	-		EFB2_03210	0.47	+0.6
3,369,739	-		EFB2_03210	0.47	-1.7
3,369,739	-		EFB2_03210	0.47	+0.4
3,369,739	-		EFB2_03210	0.47	+1.8
3,369,739	-		EFB2_03210	0.47	+2.1
3,369,739	-		EFB2_03210	0.47	-0.4
3,369,739	-		EFB2_03210	0.47	-1.0
3,369,739	-		EFB2_03210	0.47	-2.9
3,369,739	-		EFB2_03210	0.47	-2.1
3,369,739	-		EFB2_03210	0.47	+1.9
3,369,739	-		EFB2_03210	0.47	-2.3
3,369,740	+		EFB2_03210	0.47	-0.4
3,369,740	+		EFB2_03210	0.47	-0.6
3,369,740	+		EFB2_03210	0.47	+0.5
3,369,740	+		EFB2_03210	0.47	+0.0
3,369,740	+		EFB2_03210	0.47	-0.0
3,369,741	-		EFB2_03210	0.47	-0.3
3,369,741	-		EFB2_03210	0.47	+0.5
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