Strain Fitness in Escherichia fergusonii Becca around EFB2_02583

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
2,732,235	-				+3.6
2,732,429	-				-0.5
2,732,458	+				-0.9
2,732,466	+				-0.3
2,732,559	+				+0.5
2,732,560	-				+2.1
2,732,648	-				+3.0
2,732,650	-				-1.1
2,732,725	+				-0.3
2,732,747	+				-1.9
2,732,748	-				+1.3
2,732,756	+				+0.7
2,732,796	+				-2.1
2,732,797	-				-0.0
2,732,797	-				-0.7
2,732,797	-				-0.5
2,732,804	+				+1.7
2,732,805	-				-1.5
2,732,854	+				-1.5
2,732,854	+				-3.0
2,732,907	+				+0.5
2,732,907	+				-2.1
2,732,907	+				-2.3
2,732,907	+				-0.2
2,732,907	+				+0.2
2,732,907	+				+2.4
2,732,908	-				-0.2
2,732,908	-				-0.0
2,732,908	-				-1.5
2,732,908	-				+3.7
2,732,935	+				-0.3
2,732,941	+				-2.4
2,732,941	+				+3.3
2,732,941	+				+0.1
2,732,941	+				+1.5
2,732,942	-				+2.3
2,732,942	-				-1.8
2,732,942	-				+4.0
2,732,970	-				-1.3
2,732,970	-				+3.4
2,732,995	-				-1.7
2,733,006	+				-1.8
2,733,006	+				-1.9
2,733,007	-				+2.1
2,733,015	+				-3.1
2,733,015	+				-2.7
2,733,015	+				-2.1
2,733,015	+				+2.1
2,733,015	+				+0.2
2,733,015	+				-0.5
2,733,015	+				+0.6
2,733,015	+				+1.8
2,733,015	+				+0.8
2,733,015	+				-1.2
2,733,015	+				-2.6
2,733,015	+				+1.0
2,733,015	+				-1.0
2,733,015	+				+0.7
2,733,016	-				+0.4
2,733,016	-				-1.0
2,733,016	-				+1.3
2,733,016	-				+2.0
2,733,016	-				-0.3
2,733,016	-				+3.3
2,733,060	+				-2.9
2,733,060	+				-0.6
2,733,060	+				-0.8
2,733,060	+				+2.1
2,733,060	+				-0.8
2,733,060	+				-1.2
2,733,060	+				+2.0
2,733,060	+				+2.0
2,733,060	+				-0.6
2,733,060	+				+0.3
2,733,060	+				+2.2
2,733,061	-				-0.2
2,733,061	-				+0.2
2,733,061	-				-1.8
2,733,061	-				+0.7
2,733,061	-				+0.4
2,733,062	+				-2.1
2,733,100	+				+0.7
2,733,100	+				-1.3
2,733,100	+				-1.0
2,733,101	-				+2.6
2,733,114	+				-0.7
2,733,114	+				+2.2
2,733,114	+				-0.2
2,733,114	+				+1.3
2,733,114	+				+2.9
2,733,114	+				-3.4
2,733,114	+				-2.9
2,733,115	-				+2.0
2,733,146	+				+1.2
2,733,146	+				+1.0
2,733,146	+				+1.2
2,733,147	-				+3.0
2,733,172	+				+1.4
2,733,172	+				-1.5
2,733,172	+				+0.3
2,733,172	+				-0.0
2,733,173	-				-1.0
2,733,173	-				-1.3
2,733,194	+				+3.0
2,733,195	-				-1.8
2,733,205	+				+0.8
2,733,262	+				-1.5
2,733,262	+				+1.6
2,733,262	+				+2.1
2,733,262	+				-1.9
2,733,327	+		EFB2_02583	0.11	+0.7
2,733,327	+		EFB2_02583	0.11	+2.8
2,733,327	+		EFB2_02583	0.11	+1.0
2,733,328	-		EFB2_02583	0.11	+3.2
2,733,328	-		EFB2_02583	0.11	+1.0
2,733,382	+		EFB2_02583	0.17	+0.5
2,733,382	+		EFB2_02583	0.17	+1.1
2,733,382	+		EFB2_02583	0.17	-0.6
2,733,382	+		EFB2_02583	0.17	-1.7
2,733,382	+		EFB2_02583	0.17	-0.4
2,733,382	+		EFB2_02583	0.17	-0.6
2,733,382	+		EFB2_02583	0.17	-0.5
2,733,382	+		EFB2_02583	0.17	+2.4
2,733,382	+		EFB2_02583	0.17	+0.4
2,733,382	+		EFB2_02583	0.17	-1.2
2,733,382	+		EFB2_02583	0.17	-0.8
2,733,382	+		EFB2_02583	0.17	+0.9
2,733,382	+		EFB2_02583	0.17	+1.4
2,733,382	+		EFB2_02583	0.17	-1.3
2,733,382	+		EFB2_02583	0.17	-1.5
2,733,382	+		EFB2_02583	0.17	+0.6
2,733,382	+		EFB2_02583	0.17	+1.9
2,733,382	+		EFB2_02583	0.17	-1.2
2,733,382	+		EFB2_02583	0.17	+0.9
2,733,382	+		EFB2_02583	0.17	-0.7
2,733,382	+		EFB2_02583	0.17	+1.3
2,733,382	+		EFB2_02583	0.17	-3.5
2,733,383	-		EFB2_02583	0.17	-1.7
2,733,383	-		EFB2_02583	0.17	+1.2
2,733,383	-		EFB2_02583	0.17	+0.1
2,733,383	-		EFB2_02583	0.17	-1.0
2,733,383	-		EFB2_02583	0.17	+1.1
2,733,383	-		EFB2_02583	0.17	-0.0
2,733,383	-		EFB2_02583	0.17	-1.4
2,733,383	-		EFB2_02583	0.17	-1.3
2,733,383	-		EFB2_02583	0.17	-2.3
2,733,383	-		EFB2_02583	0.17	-1.1
2,733,383	-		EFB2_02583	0.17	-1.8
2,733,384	+		EFB2_02583	0.17	-3.2
2,733,384	+		EFB2_02583	0.17	+3.2
2,733,384	+		EFB2_02583	0.17	+0.4
2,733,384	+		EFB2_02583	0.17	-1.4
2,733,384	+		EFB2_02583	0.17	-0.2
2,733,384	+		EFB2_02583	0.17	+2.2
2,733,384	+		EFB2_02583	0.17	+1.1
2,733,384	+		EFB2_02583	0.17	+0.8
2,733,385	-		EFB2_02583	0.17	-1.7
2,733,385	-		EFB2_02583	0.17	-1.5
2,733,385	-		EFB2_02583	0.17	+2.1
2,733,385	-		EFB2_02583	0.17	-1.6
2,733,385	-		EFB2_02583	0.17	-0.5
2,733,499	+		EFB2_02583	0.29	+1.7
2,733,499	+		EFB2_02583	0.29	-1.0
2,733,499	+		EFB2_02583	0.29	+1.5
2,733,499	+		EFB2_02583	0.29	+1.7
2,733,500	-		EFB2_02583	0.29	+1.0
2,733,500	-		EFB2_02583	0.29	+0.9
2,733,523	+		EFB2_02583	0.32	-2.2
2,733,523	+		EFB2_02583	0.32	+1.2
2,733,524	-		EFB2_02583	0.32	-1.0
2,733,547	+		EFB2_02583	0.34	-0.3
2,733,547	+		EFB2_02583	0.34	+1.2
2,733,547	+		EFB2_02583	0.34	-2.9
2,733,547	+		EFB2_02583	0.34	-2.4
2,733,547	+		EFB2_02583	0.34	-1.5
2,733,547	+		EFB2_02583	0.34	+0.3
2,733,547	+		EFB2_02583	0.34	-1.6
2,733,547	+		EFB2_02583	0.34	+0.4
2,733,547	+		EFB2_02583	0.34	-1.7
2,733,547	+		EFB2_02583	0.34	-0.6
2,733,547	+		EFB2_02583	0.34	-1.2
2,733,547	+		EFB2_02583	0.34	+1.0
2,733,547	+		EFB2_02583	0.34	+2.0
2,733,547	+		EFB2_02583	0.34	+1.8
2,733,547	+		EFB2_02583	0.34	+0.1
2,733,547	+		EFB2_02583	0.34	+1.4
2,733,548	-		EFB2_02583	0.34	+2.1
2,733,548	-		EFB2_02583	0.34	+0.2
2,733,548	-		EFB2_02583	0.34	-0.5
2,733,548	-		EFB2_02583	0.34	-1.1
2,733,548	-		EFB2_02583	0.34	-0.3
2,733,548	-		EFB2_02583	0.34	-0.0
2,733,548	-		EFB2_02583	0.34	-1.6
2,733,548	-		EFB2_02583	0.34	-0.7
2,733,548	-		EFB2_02583	0.34	+1.8
2,733,548	-		EFB2_02583	0.34	-0.2
2,733,548	-		EFB2_02583	0.34	+2.2
2,733,548	-		EFB2_02583	0.34	+1.0
2,733,548	-		EFB2_02583	0.34	+1.8
2,733,704	+		EFB2_02583	0.51	+1.6
2,733,704	+		EFB2_02583	0.51	-1.3
2,733,704	+		EFB2_02583	0.51	+2.5
2,733,704	+		EFB2_02583	0.51	+1.6
2,733,704	+		EFB2_02583	0.51	-0.5
2,733,704	+		EFB2_02583	0.51	+2.1
2,733,705	-		EFB2_02583	0.51	-1.8
2,733,708	+		EFB2_02583	0.51	+1.5
2,733,708	+		EFB2_02583	0.51	+0.1
2,733,708	+		EFB2_02583	0.51	-2.4
2,733,708	+		EFB2_02583	0.51	+1.2
2,733,709	-		EFB2_02583	0.52	+1.8
2,733,709	-		EFB2_02583	0.52	-1.7
2,733,709	-		EFB2_02583	0.52	-1.8
2,733,709	-		EFB2_02583	0.52	+1.0
2,733,709	-		EFB2_02583	0.52	+1.4
2,733,709	-		EFB2_02583	0.52	-1.2
2,733,715	+		EFB2_02583	0.52	+0.9
2,733,715	+		EFB2_02583	0.52	+1.7
2,733,715	+		EFB2_02583	0.52	-0.8
2,733,715	+		EFB2_02583	0.52	+1.1
2,733,715	+		EFB2_02583	0.52	-1.5
2,733,715	+		EFB2_02583	0.52	+0.5
2,733,715	+		EFB2_02583	0.52	-1.0
2,733,715	+		EFB2_02583	0.52	-1.5
2,733,715	+		EFB2_02583	0.52	+0.7
2,733,715	+		EFB2_02583	0.52	+3.0
2,733,715	+		EFB2_02583	0.52	+1.3
2,733,715	+		EFB2_02583	0.52	-1.7
2,733,716	-		EFB2_02583	0.52	-0.8
2,733,716	-		EFB2_02583	0.52	-1.1
2,733,716	-		EFB2_02583	0.52	+1.4
2,733,735	+		EFB2_02583	0.54	+1.6
2,733,735	+		EFB2_02583	0.54	+0.9
2,733,735	+		EFB2_02583	0.54	-0.5
2,733,735	+		EFB2_02583	0.54	+1.5
2,733,735	+		EFB2_02583	0.54	-1.7
2,733,735	+		EFB2_02583	0.54	-0.7
2,733,735	+		EFB2_02583	0.54	+0.3
2,733,735	+		EFB2_02583	0.54	-2.6
2,733,736	-		EFB2_02583	0.54	-2.2
2,733,736	-		EFB2_02583	0.54	-0.7
2,733,736	-		EFB2_02583	0.54	-1.9
2,733,736	-		EFB2_02583	0.54	-0.5
2,733,771	+		EFB2_02583	0.58	+1.4
2,733,771	+		EFB2_02583	0.58	-2.1
2,733,771	+		EFB2_02583	0.58	+1.1
2,733,771	+		EFB2_02583	0.58	+0.7
2,733,772	-		EFB2_02583	0.58	+1.1
2,733,793	+		EFB2_02583	0.61	+3.4
2,733,793	+		EFB2_02583	0.61	+1.9
2,733,793	+		EFB2_02583	0.61	-2.1
2,733,810	+		EFB2_02583	0.62	+0.9
2,733,876	+		EFB2_02583	0.69	+2.3
2,733,876	+		EFB2_02583	0.69	+0.3
2,733,876	+		EFB2_02583	0.69	+2.2
2,733,877	-		EFB2_02583	0.70	-0.8
2,733,921	+		EFB2_02583	0.74	+0.4
2,733,921	+		EFB2_02583	0.74	-1.0
2,734,020	+		EFB2_02583	0.85	-1.4
2,734,082	+				-3.0
2,734,082	+				+1.6
2,734,082	+				+1.0
2,734,082	+				-1.5
2,734,083	-				-0.2
2,734,083	-				+0.2
2,734,133	+				+1.4
2,734,133	+				-0.5
2,734,134	-				-0.3
2,734,159	+				+0.7
2,734,159	+				+0.6
2,734,159	+				-0.9
2,734,159	+				-0.3
2,734,159	+				+2.2
2,734,159	+				+4.0
2,734,169	-				-1.6
2,734,188	+				+2.0
2,734,197	-				+1.8
2,734,202	+				+0.1
2,734,202	+				-1.0
2,734,202	+				+1.4
2,734,202	+				-1.7
2,734,202	+				+1.0
2,734,260	+				+0.9
2,734,261	-				+2.7
2,734,261	-				+2.2
2,734,261	-				+2.7
2,734,291	+				+1.9
2,734,291	+				-0.6
2,734,297	-				-2.4
2,734,297	-				+1.6
2,734,297	-				-0.2
2,734,297	-				+0.2
2,734,325	+				-0.9
2,734,325	+				+0.8
2,734,325	+				-1.6
2,734,326	-				-2.5
2,734,341	+				+0.4
2,734,341	+				+1.0
2,734,342	-				+0.5
2,734,342	-				+0.9
2,734,342	-				-1.2
2,734,342	-				-0.7
2,734,342	-				+2.8
2,734,358	+				-0.7
2,734,359	-				-1.4
2,734,359	-				-2.0
2,734,387	+				+0.4
2,734,387	+				-2.6
2,734,387	+				-1.5
2,734,388	-				-0.9
2,734,388	-				-0.9
2,734,388	-				-0.2
2,734,421	+				-1.5
2,734,421	+				-0.2
2,734,422	-				-2.9
2,734,422	-				-3.1
2,734,461	+		EFB2_02584	0.12	-2.6
2,734,461	+		EFB2_02584	0.12	+0.4
2,734,461	+		EFB2_02584	0.12	-0.7
2,734,461	+		EFB2_02584	0.12	+0.1
2,734,461	+		EFB2_02584	0.12	-0.8
2,734,461	+		EFB2_02584	0.12	+0.9
2,734,461	+		EFB2_02584	0.12	-0.2
2,734,462	-		EFB2_02584	0.13	-2.2
2,734,462	-		EFB2_02584	0.13	-0.2
2,734,462	-		EFB2_02584	0.13	+1.8
2,734,462	-		EFB2_02584	0.13	-1.7
2,734,462	-		EFB2_02584	0.13	+0.3
2,734,462	-		EFB2_02584	0.13	+1.4
2,734,462	-		EFB2_02584	0.13	+0.3
2,734,462	-		EFB2_02584	0.13	+0.1
2,734,462	-		EFB2_02584	0.13	+0.8
2,734,462	-		EFB2_02584	0.13	+0.5
2,734,462	-		EFB2_02584	0.13	-0.8
2,734,464	+		EFB2_02584	0.13	-1.5
2,734,464	+		EFB2_02584	0.13	+3.2
2,734,464	+		EFB2_02584	0.13	+0.4
2,734,464	+		EFB2_02584	0.13	-0.3
2,734,464	+		EFB2_02584	0.13	+0.5
2,734,464	+		EFB2_02584	0.13	-0.0
2,734,464	+		EFB2_02584	0.13	-1.2
2,734,464	+		EFB2_02584	0.13	+1.7
2,734,464	+		EFB2_02584	0.13	-0.9
2,734,464	+		EFB2_02584	0.13	-1.1
2,734,464	+		EFB2_02584	0.13	-0.2
2,734,465	-		EFB2_02584	0.13	+3.1
2,734,465	-		EFB2_02584	0.13	-1.5
2,734,465	-		EFB2_02584	0.13	-0.6
2,734,465	-		EFB2_02584	0.13	-0.7
2,734,465	-		EFB2_02584	0.13	+0.2
2,734,465	-		EFB2_02584	0.13	-0.5
2,734,465	-		EFB2_02584	0.13	-0.7
2,734,465	-		EFB2_02584	0.13	+2.2
2,734,465	-		EFB2_02584	0.13	-3.0
2,734,465	-		EFB2_02584	0.13	+0.2
2,734,465	-		EFB2_02584	0.13	+0.6
2,734,465	-		EFB2_02584	0.13	+1.5
2,734,465	-		EFB2_02584	0.13	+2.5
2,734,465	-		EFB2_02584	0.13	-1.3
2,734,465	-		EFB2_02584	0.13	+0.5
2,734,465	-		EFB2_02584	0.13	-2.1
2,734,465	-		EFB2_02584	0.13	+0.7
2,734,465	-		EFB2_02584	0.13	-0.7
2,734,465	-		EFB2_02584	0.13	+1.1
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