Strain Fitness in Escherichia fergusonii Becca around EFB2_02534

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
2,668,119	+		EFB2_02533	0.41	-1.0
2,668,119	+		EFB2_02533	0.41	+2.3
2,668,185	+		EFB2_02533	0.46	-0.8
2,668,185	+		EFB2_02533	0.46	+1.4
2,668,185	+		EFB2_02533	0.46	-0.4
2,668,185	+		EFB2_02533	0.46	+1.2
2,668,185	+		EFB2_02533	0.46	-2.0
2,668,186	-		EFB2_02533	0.46	+0.4
2,668,219	+		EFB2_02533	0.48	+1.4
2,668,237	+		EFB2_02533	0.49	+1.0
2,668,237	+		EFB2_02533	0.49	-2.1
2,668,237	+		EFB2_02533	0.49	+0.9
2,668,238	-		EFB2_02533	0.49	+1.5
2,668,238	-		EFB2_02533	0.49	+1.8
2,668,238	-		EFB2_02533	0.49	+1.1
2,668,238	-		EFB2_02533	0.49	-1.7
2,668,238	-		EFB2_02533	0.49	-0.3
2,668,262	-		EFB2_02533	0.51	-1.4
2,668,302	-		EFB2_02533	0.53	+2.0
2,668,327	+		EFB2_02533	0.55	+0.9
2,668,327	+		EFB2_02533	0.55	-1.8
2,668,327	+		EFB2_02533	0.55	-0.1
2,668,327	+		EFB2_02533	0.55	-1.0
2,668,328	-		EFB2_02533	0.55	-0.7
2,668,328	-		EFB2_02533	0.55	-0.7
2,668,328	-		EFB2_02533	0.55	-0.5
2,668,328	-		EFB2_02533	0.55	-0.5
2,668,328	-		EFB2_02533	0.55	-1.8
2,668,328	-		EFB2_02533	0.55	-1.3
2,668,332	+		EFB2_02533	0.55	-1.5
2,668,332	+		EFB2_02533	0.55	+0.0
2,668,333	-		EFB2_02533	0.56	-1.7
2,668,333	-		EFB2_02533	0.56	-0.3
2,668,333	-		EFB2_02533	0.56	-0.9
2,668,349	+		EFB2_02533	0.57	-1.5
2,668,349	+		EFB2_02533	0.57	-0.4
2,668,403	+		EFB2_02533	0.60	-1.4
2,668,403	+		EFB2_02533	0.60	-2.1
2,668,403	+		EFB2_02533	0.60	+0.5
2,668,404	-		EFB2_02533	0.60	+3.6
2,668,404	-		EFB2_02533	0.60	+2.1
2,668,404	-		EFB2_02533	0.60	+0.7
2,668,417	+		EFB2_02533	0.61	+0.4
2,668,417	+		EFB2_02533	0.61	+1.3
2,668,417	+		EFB2_02533	0.61	-1.1
2,668,418	-		EFB2_02533	0.61	+1.3
2,668,469	+		EFB2_02533	0.65	+0.2
2,668,469	+		EFB2_02533	0.65	+0.1
2,668,469	+		EFB2_02533	0.65	-1.3
2,668,469	+		EFB2_02533	0.65	-1.3
2,668,469	+		EFB2_02533	0.65	+0.7
2,668,469	+		EFB2_02533	0.65	+0.2
2,668,525	+		EFB2_02533	0.68	+0.6
2,668,556	+		EFB2_02533	0.70	+0.5
2,668,586	+		EFB2_02533	0.72	-0.7
2,668,586	+		EFB2_02533	0.72	-0.0
2,668,586	+		EFB2_02533	0.72	+1.2
2,668,586	+		EFB2_02533	0.72	-1.2
2,668,586	+		EFB2_02533	0.72	+0.7
2,668,586	+		EFB2_02533	0.72	+0.6
2,668,586	+		EFB2_02533	0.72	-2.5
2,668,586	+		EFB2_02533	0.72	-1.7
2,668,586	+		EFB2_02533	0.72	-0.7
2,668,586	+		EFB2_02533	0.72	-1.3
2,668,586	+		EFB2_02533	0.72	+1.4
2,668,586	+		EFB2_02533	0.72	-2.8
2,668,587	-		EFB2_02533	0.72	+1.4
2,668,587	-		EFB2_02533	0.72	+0.4
2,668,587	-		EFB2_02533	0.72	-2.3
2,668,587	-		EFB2_02533	0.72	-3.0
2,668,587	-		EFB2_02533	0.72	+0.2
2,668,587	-		EFB2_02533	0.72	-0.0
2,668,587	-		EFB2_02533	0.72	+3.8
2,668,587	-		EFB2_02533	0.72	-1.0
2,668,587	-		EFB2_02533	0.72	-2.4
2,668,587	-		EFB2_02533	0.72	+1.9
2,668,599	+		EFB2_02533	0.73	-0.5
2,668,599	+		EFB2_02533	0.73	+0.7
2,668,599	+		EFB2_02533	0.73	+1.3
2,668,600	-		EFB2_02533	0.73	+0.4
2,668,610	+		EFB2_02533	0.74	-1.1
2,668,610	+		EFB2_02533	0.74	-0.3
2,668,610	+		EFB2_02533	0.74	-1.1
2,668,610	+		EFB2_02533	0.74	+0.9
2,668,610	+		EFB2_02533	0.74	-2.0
2,668,610	+		EFB2_02533	0.74	+2.5
2,668,610	+		EFB2_02533	0.74	-0.3
2,668,610	+		EFB2_02533	0.74	-2.2
2,668,610	+		EFB2_02533	0.74	+2.1
2,668,610	+		EFB2_02533	0.74	+3.3
2,668,610	+		EFB2_02533	0.74	+1.4
2,668,610	+		EFB2_02533	0.74	+3.0
2,668,610	+		EFB2_02533	0.74	-0.6
2,668,610	+		EFB2_02533	0.74	-1.1
2,668,611	-		EFB2_02533	0.74	-2.4
2,668,611	-		EFB2_02533	0.74	+0.4
2,668,629	+		EFB2_02533	0.75	+1.7
2,668,630	-		EFB2_02533	0.75	+2.0
2,668,630	-		EFB2_02533	0.75	-1.7
2,668,684	+		EFB2_02533	0.79	-0.6
2,668,685	-		EFB2_02533	0.79	+2.8
2,668,797	+		EFB2_02533	0.86	+1.1
2,668,844	+		EFB2_02533	0.90	+0.8
2,668,844	+		EFB2_02533	0.90	+1.0
2,668,844	+		EFB2_02533	0.90	-0.5
2,668,844	+		EFB2_02533	0.90	-1.8
2,668,844	+		EFB2_02533	0.90	-0.3
2,668,844	+		EFB2_02533	0.90	+1.3
2,668,844	+		EFB2_02533	0.90	-0.6
2,668,844	+		EFB2_02533	0.90	+0.2
2,668,844	+		EFB2_02533	0.90	-1.7
2,668,844	+		EFB2_02533	0.90	+1.5
2,668,844	+		EFB2_02533	0.90	+0.7
2,668,844	+		EFB2_02533	0.90	+1.5
2,668,844	+		EFB2_02533	0.90	+0.7
2,668,844	+		EFB2_02533	0.90	+0.2
2,668,844	+		EFB2_02533	0.90	+2.6
2,668,845	-		EFB2_02533	0.90	-0.2
2,668,845	-		EFB2_02533	0.90	-1.1
2,668,845	-		EFB2_02533	0.90	-0.8
2,668,845	-		EFB2_02533	0.90	-1.2
2,668,845	-		EFB2_02533	0.90	+1.6
2,668,845	-		EFB2_02533	0.90	-1.5
2,668,845	-		EFB2_02533	0.90	+1.5
2,668,845	-		EFB2_02533	0.90	-0.9
2,668,845	-		EFB2_02533	0.90	-2.6
2,668,845	-		EFB2_02533	0.90	-0.3
2,668,845	-		EFB2_02533	0.90	-1.0
2,668,846	+		EFB2_02533	0.90	-3.0
2,668,846	+		EFB2_02533	0.90	-0.8
2,668,846	+		EFB2_02533	0.90	+1.4
2,668,846	+		EFB2_02533	0.90	+1.0
2,668,846	+		EFB2_02533	0.90	-0.9
2,668,846	+		EFB2_02533	0.90	+1.3
2,668,847	-		EFB2_02533	0.90	+1.5
2,668,847	-		EFB2_02533	0.90	-0.9
2,668,847	-		EFB2_02533	0.90	+1.0
2,668,847	-		EFB2_02533	0.90	-1.7
2,668,885	+				+2.7
2,668,887	+				-1.1
2,668,887	+				+1.5
2,668,887	+				+1.0
2,668,887	+				-2.4
2,668,887	+				+1.2
2,668,887	+				+3.0
2,668,887	+				-1.9
2,668,887	+				+0.5
2,668,887	+				-2.2
2,668,887	+				-2.4
2,668,887	+				-0.9
2,668,888	-				+0.4
2,668,888	-				+3.5
2,668,888	-				-3.2
2,668,888	-				+0.2
2,668,978	+				+3.0
2,668,998	-				-0.1
2,668,998	-				-2.0
2,668,998	-				-0.0
2,669,040	-				-1.2
2,669,040	-				+0.4
2,669,107	-				+0.9
2,669,107	-				-0.0
2,669,107	-				-1.0
2,669,107	-				+2.4
2,669,110	+				+3.0
2,669,110	+				-0.0
2,669,111	-				+2.4
2,669,111	-				-2.8
2,669,111	-				+1.4
2,669,111	-				+0.8
2,669,111	-				+3.6
2,669,111	-				-2.1
2,669,111	-				+1.1
2,669,111	-				-0.0
2,669,111	-				-3.2
2,669,111	-				+1.1
2,669,111	-				+2.2
2,669,111	-				+1.3
2,669,111	-				-1.2
2,669,113	+				+0.7
2,669,113	+				+0.2
2,669,113	+				+0.2
2,669,114	-				+1.9
2,669,114	-				+1.0
2,669,114	-				+2.5
2,669,114	-				-0.0
2,669,123	+				-0.0
2,669,124	-				-1.4
2,669,147	+				-0.7
2,669,148	-				+1.3
2,669,148	-				+0.8
2,669,148	-				-1.0
2,669,148	-				-0.9
2,669,163	-				+0.3
2,669,163	-				+1.0
2,669,188	+				+1.0
2,669,189	-				+0.4
2,669,189	-				+1.8
2,669,189	-				-1.1
2,669,189	-				+0.2
2,669,189	-				-2.7
2,669,189	-				+1.0
2,669,189	-				+3.4
2,669,189	-				+0.9
2,669,261	+		EFB2_02534	0.14	-0.7
2,669,262	-		EFB2_02534	0.14	-0.3
2,669,262	-		EFB2_02534	0.14	+0.2
2,669,263	+		EFB2_02534	0.14	+2.8
2,669,264	-		EFB2_02534	0.14	-0.3
2,669,264	-		EFB2_02534	0.14	-1.9
2,669,264	-		EFB2_02534	0.14	-0.8
2,669,291	+		EFB2_02534	0.17	-1.9
2,669,292	-		EFB2_02534	0.17	+0.6
2,669,314	+		EFB2_02534	0.19	-1.8
2,669,314	+		EFB2_02534	0.19	-1.7
2,669,314	+		EFB2_02534	0.19	-0.3
2,669,314	+		EFB2_02534	0.19	+1.8
2,669,315	-		EFB2_02534	0.19	+0.9
2,669,315	-		EFB2_02534	0.19	-2.8
2,669,315	-		EFB2_02534	0.19	-2.4
2,669,315	-		EFB2_02534	0.19	-2.6
2,669,315	-		EFB2_02534	0.19	-1.2
2,669,324	+		EFB2_02534	0.20	-0.5
2,669,325	-		EFB2_02534	0.20	-2.7
2,669,325	-		EFB2_02534	0.20	+2.0
2,669,382	-		EFB2_02534	0.25	-2.6
2,669,391	-		EFB2_02534	0.26	-1.2
2,669,407	-		EFB2_02534	0.28	+1.4
2,669,407	-		EFB2_02534	0.28	-1.3
2,669,424	-		EFB2_02534	0.29	-1.0
2,669,435	+		EFB2_02534	0.30	+2.5
2,669,435	+		EFB2_02534	0.30	-0.2
2,669,435	+		EFB2_02534	0.30	-2.2
2,669,435	+		EFB2_02534	0.30	+2.7
2,669,436	-		EFB2_02534	0.31	+3.3
2,669,436	-		EFB2_02534	0.31	+1.9
2,669,436	-		EFB2_02534	0.31	+0.3
2,669,471	+		EFB2_02534	0.34	+1.2
2,669,475	-		EFB2_02534	0.34	-2.9
2,669,511	-		EFB2_02534	0.38	-1.5
2,669,526	-		EFB2_02534	0.39	-2.8
2,669,576	-		EFB2_02534	0.44	-2.0
2,669,576	-		EFB2_02534	0.44	+3.4
2,669,576	-		EFB2_02534	0.44	+2.3
2,669,576	-		EFB2_02534	0.44	-0.0
2,669,576	-		EFB2_02534	0.44	-1.7
2,669,622	-		EFB2_02534	0.48	-0.0
2,669,654	+		EFB2_02534	0.51	+0.7
2,669,655	-		EFB2_02534	0.51	+1.3
2,669,691	-		EFB2_02534	0.55	-0.3
2,669,696	+		EFB2_02534	0.55	+0.4
2,669,697	-		EFB2_02534	0.55	-1.1
2,669,697	-		EFB2_02534	0.55	+3.6
2,669,697	-		EFB2_02534	0.55	-0.3
2,669,707	+		EFB2_02534	0.56	+2.9
2,669,707	+		EFB2_02534	0.56	+0.2
2,669,707	+		EFB2_02534	0.56	+0.4
2,669,707	+		EFB2_02534	0.56	+1.5
2,669,708	-		EFB2_02534	0.56	-0.7
2,669,708	-		EFB2_02534	0.56	+1.0
2,669,708	-		EFB2_02534	0.56	-0.2
2,669,708	-		EFB2_02534	0.56	+0.9
2,669,708	-		EFB2_02534	0.56	+1.2
2,669,708	-		EFB2_02534	0.56	+0.6
2,669,708	-		EFB2_02534	0.56	+0.3
2,669,708	-		EFB2_02534	0.56	-0.9
2,669,708	-		EFB2_02534	0.56	+0.9
2,669,761	-		EFB2_02534	0.61	-0.9
2,669,761	-		EFB2_02534	0.61	-2.2
2,669,778	-		EFB2_02534	0.63	+0.7
2,669,826	+		EFB2_02534	0.67	+0.2
2,669,826	+		EFB2_02534	0.67	-0.5
2,669,826	+		EFB2_02534	0.67	-0.3
2,669,827	-		EFB2_02534	0.67	+1.2
2,669,827	-		EFB2_02534	0.67	-2.7
2,669,827	-		EFB2_02534	0.67	-2.1
2,669,827	-		EFB2_02534	0.67	-1.7
2,669,827	-		EFB2_02534	0.67	-1.7
2,669,843	+		EFB2_02534	0.69	+2.2
2,669,844	-		EFB2_02534	0.69	+0.7
2,669,844	-		EFB2_02534	0.69	-2.3
2,669,844	-		EFB2_02534	0.69	+0.4
2,669,847	+		EFB2_02534	0.69	-0.3
2,669,847	+		EFB2_02534	0.69	-0.5
2,669,847	+		EFB2_02534	0.69	-0.0
2,669,848	-		EFB2_02534	0.69	-0.7
2,669,848	-		EFB2_02534	0.69	-1.9
2,669,848	-		EFB2_02534	0.69	-0.0
2,669,848	-		EFB2_02534	0.69	-0.5
2,669,848	-		EFB2_02534	0.69	-0.5
2,669,848	-		EFB2_02534	0.69	+0.4
2,669,882	+		EFB2_02534	0.73	+1.4
2,669,882	+		EFB2_02534	0.73	-0.5
2,669,883	-		EFB2_02534	0.73	-0.5
2,669,883	-		EFB2_02534	0.73	+1.5
2,670,029	+		EFB2_02534	0.86	-2.2
2,670,029	+		EFB2_02534	0.86	-1.1
2,670,030	-		EFB2_02534	0.86	-0.7
2,670,030	-		EFB2_02534	0.86	-0.8
2,670,030	-		EFB2_02534	0.86	-0.4
2,670,030	-		EFB2_02534	0.86	-2.8
2,670,030	-		EFB2_02534	0.86	-0.8
2,670,030	-		EFB2_02534	0.86	-2.3
2,670,030	-		EFB2_02534	0.86	+0.2
2,670,030	-		EFB2_02534	0.86	+0.8
2,670,031	+		EFB2_02534	0.87	+0.2
2,670,031	+		EFB2_02534	0.87	+2.2
2,670,031	+		EFB2_02534	0.87	+2.4
2,670,032	-		EFB2_02534	0.87	+0.0
2,670,032	-		EFB2_02534	0.87	-2.9
2,670,032	-		EFB2_02534	0.87	-3.0
2,670,032	-		EFB2_02534	0.87	+0.6
2,670,032	-		EFB2_02534	0.87	+1.7
2,670,043	+		EFB2_02534	0.88	-1.0
2,670,053	+		EFB2_02534	0.89	-1.3
2,670,054	-		EFB2_02534	0.89	+1.4
2,670,054	-		EFB2_02534	0.89	+0.6
2,670,054	-		EFB2_02534	0.89	+2.7
2,670,054	-		EFB2_02534	0.89	-2.7
2,670,054	-		EFB2_02534	0.89	+0.9
2,670,058	-		EFB2_02534	0.89	+0.8
2,670,065	+		EFB2_02534	0.90	+1.9
2,670,093	-				-1.9
2,670,123	+				+0.6
2,670,129	+				-2.0
2,670,129	+				-2.6
2,670,130	-				-1.7
2,670,130	-				-1.8
2,670,130	-				-2.2
2,670,165	+				-0.8
2,670,165	+				-0.7
2,670,165	+				-1.9
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