Strain Fitness in Escherichia fergusonii Becca around EFB2_02344

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
2,479,727	+		EFB2_02342	0.85	-1.1
2,479,730	+		EFB2_02342	0.85	-1.1
2,479,730	+		EFB2_02342	0.85	-0.2
2,479,731	-		EFB2_02342	0.85	+0.4
2,479,731	-		EFB2_02342	0.85	-0.3
2,479,731	-		EFB2_02342	0.85	-1.8
2,479,762	+		EFB2_02342	0.88	+0.7
2,479,762	+		EFB2_02342	0.88	+0.6
2,479,762	+		EFB2_02342	0.88	-0.7
2,479,762	+		EFB2_02342	0.88	-0.9
2,479,762	+		EFB2_02342	0.88	-0.9
2,479,763	-		EFB2_02342	0.88	+0.7
2,479,829	+				-2.2
2,479,876	+				+0.2
2,479,877	-				+3.3
2,479,877	-				-0.7
2,479,877	-				-1.6
2,479,895	+				-0.6
2,479,895	+				+1.7
2,479,895	+				-0.8
2,479,895	+				-1.9
2,479,895	+				+0.9
2,479,895	+				-0.3
2,479,895	+				+3.0
2,479,895	+				-1.2
2,479,895	+				-0.8
2,479,895	+				-1.0
2,479,895	+				+0.3
2,479,895	+				+0.2
2,479,895	+				-2.0
2,479,895	+				-0.6
2,479,895	+				+0.9
2,479,895	+				-0.8
2,479,895	+				-0.9
2,479,895	+				+0.8
2,479,895	+				+4.0
2,479,895	+				-0.4
2,479,896	-				-2.4
2,479,896	-				+2.1
2,479,896	-				-1.9
2,479,896	-				+2.0
2,479,896	-				+1.4
2,479,896	-				+0.6
2,479,896	-				+0.0
2,479,896	-				-0.8
2,479,896	-				-1.8
2,479,896	-				-0.7
2,479,934	-				-0.4
2,479,953	-				-0.4
2,479,962	+				-0.4
2,479,962	+				-0.2
2,479,962	+				+1.5
2,479,963	-				+1.1
2,479,963	-				+2.3
2,480,042	-		EFB2_02343	0.18	-3.0
2,480,083	-		EFB2_02343	0.25	-0.4
2,480,151	-		EFB2_02343	0.36	-0.8
2,480,169	-		EFB2_02343	0.40	+0.8
2,480,206	-		EFB2_02343	0.46	-2.2
2,480,264	-		EFB2_02343	0.55	-2.4
2,480,264	-		EFB2_02343	0.55	-2.1
2,480,264	-		EFB2_02343	0.55	+1.1
2,480,266	+		EFB2_02343	0.56	+2.1
2,480,267	-		EFB2_02343	0.56	+1.9
2,480,275	-		EFB2_02343	0.57	+2.7
2,480,288	-		EFB2_02343	0.59	-0.2
2,480,288	-		EFB2_02343	0.59	-2.3
2,480,292	-		EFB2_02343	0.60	+1.6
2,480,332	+		EFB2_02343	0.67	-0.3
2,480,333	-		EFB2_02343	0.67	-2.2
2,480,333	-		EFB2_02343	0.67	-1.3
2,480,342	-		EFB2_02343	0.68	+1.6
2,480,342	-		EFB2_02343	0.68	+0.3
2,480,342	-		EFB2_02343	0.68	+0.3
2,480,358	-		EFB2_02343	0.71	+0.4
2,480,358	-		EFB2_02343	0.71	-3.2
2,480,358	-		EFB2_02343	0.71	+1.9
2,480,378	+		EFB2_02343	0.74	-0.2
2,480,379	-		EFB2_02343	0.74	-0.9
2,480,389	+		EFB2_02343	0.76	+0.7
2,480,390	-		EFB2_02343	0.76	-2.6
2,480,390	-		EFB2_02343	0.76	+0.5
2,480,395	+		EFB2_02343	0.77	-0.2
2,480,395	+		EFB2_02343	0.77	-1.4
2,480,396	-		EFB2_02343	0.77	-0.9
2,480,396	-		EFB2_02343	0.77	+2.3
2,480,396	-		EFB2_02343	0.77	+0.4
2,480,396	-		EFB2_02343	0.77	+1.0
2,480,396	-		EFB2_02343	0.77	-0.2
2,480,396	-		EFB2_02343	0.77	+1.7
2,480,396	-		EFB2_02343	0.77	-0.3
2,480,396	-		EFB2_02343	0.77	-1.4
2,480,396	-		EFB2_02343	0.77	+2.4
2,480,396	-		EFB2_02343	0.77	+1.4
2,480,396	-		EFB2_02343	0.77	+0.0
2,480,396	-		EFB2_02343	0.77	+0.2
2,480,396	-		EFB2_02343	0.77	-1.9
2,480,507	+				+3.8
2,480,508	-				-0.0
2,480,508	-				-1.1
2,480,508	-				+0.5
2,480,546	+				+0.3
2,480,578	+				-1.1
2,480,578	+				+3.0
2,480,578	+				+1.0
2,480,579	-				-0.1
2,480,590	+				+0.1
2,480,590	+				-1.2
2,480,591	-				+1.0
2,480,602	+				-1.1
2,480,603	-				+1.8
2,480,603	-				-1.1
2,480,608	+				-2.1
2,480,608	+				-1.6
2,480,608	+				+0.5
2,480,608	+				-0.7
2,480,609	-				+3.2
2,480,611	+				-2.1
2,480,611	+				+0.1
2,480,611	+				+0.4
2,480,611	+				-0.7
2,480,611	+				-1.6
2,480,611	+				-1.6
2,480,611	+				+0.7
2,480,611	+				+2.7
2,480,612	-				-0.6
2,480,612	-				-1.8
2,480,612	-				+0.2
2,480,618	-				-0.4
2,480,647	+				+2.5
2,480,647	+				-0.5
2,480,647	+				+0.9
2,480,753	+		EFB2_02344	0.50	-2.2
2,480,753	+		EFB2_02344	0.50	+2.2
2,480,753	+		EFB2_02344	0.50	+0.7
2,480,754	-		EFB2_02344	0.50	+0.2
2,480,754	-		EFB2_02344	0.50	+0.2
2,480,806	+		EFB2_02344	0.72	-0.3
2,480,807	-		EFB2_02344	0.72	+1.1
2,480,818	+		EFB2_02344	0.77	+4.0
2,480,819	-		EFB2_02344	0.77	-1.9
2,480,824	+		EFB2_02344	0.79	+0.6
2,480,824	+		EFB2_02344	0.79	-1.9
2,480,824	+		EFB2_02344	0.79	-1.2
2,480,824	+		EFB2_02344	0.79	+1.9
2,480,825	-		EFB2_02344	0.80	+3.8
2,480,828	+		EFB2_02344	0.81	+1.5
2,480,828	+		EFB2_02344	0.81	-0.9
2,480,829	-		EFB2_02344	0.81	+3.0
2,480,829	-		EFB2_02344	0.81	-0.7
2,480,878	-				-0.8
2,480,887	+				-2.1
2,480,887	+				-2.4
2,480,887	+				-0.4
2,480,887	+				-0.1
2,480,887	+				+2.2
2,480,887	+				+2.9
2,480,887	+				-3.3
2,480,887	+				+0.1
2,480,888	-				-0.6
2,480,888	-				+0.7
2,480,888	-				-1.1
2,480,889	+				-1.1
2,480,889	+				+3.0
2,480,889	+				-1.9
2,480,889	+				-0.4
2,480,889	+				+2.0
2,480,889	+				+0.9
2,480,889	+				+2.5
2,480,889	+				-0.1
2,480,889	+				+0.6
2,480,890	-				-0.4
2,480,890	-				+1.6
2,480,890	-				-1.8
2,480,890	-				+0.7
2,480,900	+				-2.1
2,480,901	-				-0.8
2,480,901	-				-1.2
2,480,901	-				-0.7
2,480,901	-				-1.4
2,480,901	-				-1.2
2,480,901	-				-0.6
2,480,907	+				+0.5
2,480,907	+				+1.1
2,480,907	+				-0.6
2,480,908	-				+1.4
2,480,908	-				-1.5
2,480,921	+				-2.4
2,480,921	+				-0.4
2,480,921	+				+1.7
2,480,922	-				+2.0
2,480,922	-				-0.6
2,480,922	-				+1.0
2,480,933	+				+1.3
2,480,933	+				+2.2
2,480,933	+				-2.5
2,480,933	+				-0.5
2,480,936	+				+1.0
2,480,936	+				-0.2
2,480,937	-				+0.0
2,480,937	-				+1.3
2,480,939	+				-0.8
2,480,939	+				-2.9
2,480,939	+				+2.9
2,480,939	+				-1.6
2,480,940	-				+0.6
2,480,940	-				+3.0
2,480,940	-				+1.4
2,480,940	-				-1.4
2,480,940	-				-0.6
2,480,940	-				-1.1
2,480,940	-				-1.2
2,480,940	-				-0.7
2,480,982	+				+0.3
2,480,982	+				-0.7
2,481,005	+				+1.0
2,481,005	+				-2.3
2,481,005	+				-0.3
2,481,005	+				+1.7
2,481,005	+				+0.8
2,481,005	+				+1.9
2,481,005	+				+1.0
2,481,005	+				-1.7
2,481,005	+				-1.5
2,481,005	+				-0.8
2,481,005	+				+1.1
2,481,005	+				+1.8
2,481,005	+				+4.2
2,481,005	+				-2.2
2,481,005	+				-1.3
2,481,006	-				-1.1
2,481,006	-				+0.4
2,481,006	-				+2.5
2,481,006	-				-0.4
2,481,032	+		EFB2_02345	0.12	-1.6
2,481,033	-		EFB2_02345	0.12	-1.0
2,481,080	+		EFB2_02345	0.18	+1.0
2,481,080	+		EFB2_02345	0.18	+0.2
2,481,080	+		EFB2_02345	0.18	-1.7
2,481,081	-		EFB2_02345	0.18	-0.7
2,481,081	-		EFB2_02345	0.18	-0.7
2,481,084	+		EFB2_02345	0.18	+0.1
2,481,084	+		EFB2_02345	0.18	+1.4
2,481,084	+		EFB2_02345	0.18	-1.1
2,481,084	+		EFB2_02345	0.18	+0.8
2,481,084	+		EFB2_02345	0.18	-0.8
2,481,084	+		EFB2_02345	0.18	-0.8
2,481,084	+		EFB2_02345	0.18	-0.1
2,481,084	+		EFB2_02345	0.18	-0.1
2,481,084	+		EFB2_02345	0.18	-0.4
2,481,085	-		EFB2_02345	0.18	+0.0
2,481,085	-		EFB2_02345	0.18	-1.8
2,481,093	+		EFB2_02345	0.19	+1.9
2,481,168	-		EFB2_02345	0.27	+1.8
2,481,168	-		EFB2_02345	0.27	+3.4
2,481,168	-		EFB2_02345	0.27	+2.0
2,481,216	+		EFB2_02345	0.33	-0.4
2,481,216	+		EFB2_02345	0.33	+1.1
2,481,216	+		EFB2_02345	0.33	+0.2
2,481,216	+		EFB2_02345	0.33	+2.6
2,481,216	+		EFB2_02345	0.33	+3.5
2,481,216	+		EFB2_02345	0.33	-1.8
2,481,217	-		EFB2_02345	0.33	+1.5
2,481,217	-		EFB2_02345	0.33	+0.4
2,481,217	-		EFB2_02345	0.33	-2.2
2,481,217	-		EFB2_02345	0.33	+0.0
2,481,217	-		EFB2_02345	0.33	-0.6
2,481,217	-		EFB2_02345	0.33	+2.2
2,481,217	-		EFB2_02345	0.33	-1.6
2,481,217	-		EFB2_02345	0.33	-0.6
2,481,217	-		EFB2_02345	0.33	+3.0
2,481,217	-		EFB2_02345	0.33	+0.7
2,481,242	+		EFB2_02345	0.36	+0.9
2,481,242	+		EFB2_02345	0.36	-1.7
2,481,242	+		EFB2_02345	0.36	+1.0
2,481,243	-		EFB2_02345	0.36	-0.4
2,481,243	-		EFB2_02345	0.36	-1.9
2,481,243	-		EFB2_02345	0.36	-0.8
2,481,262	+		EFB2_02345	0.38	+0.7
2,481,266	+		EFB2_02345	0.38	-0.6
2,481,267	-		EFB2_02345	0.38	+0.2
2,481,299	-		EFB2_02345	0.42	+1.7
2,481,350	+		EFB2_02345	0.48	-1.6
2,481,350	+		EFB2_02345	0.48	-0.3
2,481,350	+		EFB2_02345	0.48	+1.1
2,481,351	-		EFB2_02345	0.48	-0.2
2,481,391	+		EFB2_02345	0.52	+1.6
2,481,392	-		EFB2_02345	0.52	-0.1
2,481,401	+		EFB2_02345	0.53	+1.6
2,481,402	-		EFB2_02345	0.54	-1.3
2,481,443	+		EFB2_02345	0.58	+2.8
2,481,444	-		EFB2_02345	0.58	+0.7
2,481,444	-		EFB2_02345	0.58	+3.0
2,481,455	+		EFB2_02345	0.59	+1.5
2,481,456	-		EFB2_02345	0.60	-1.7
2,481,469	+		EFB2_02345	0.61	+0.6
2,481,585	+		EFB2_02345	0.74	-0.7
2,481,585	+		EFB2_02345	0.74	+0.2
2,481,585	+		EFB2_02345	0.74	+1.5
2,481,586	-		EFB2_02345	0.74	-0.1
2,481,586	-		EFB2_02345	0.74	+2.9
2,481,598	+		EFB2_02345	0.75	+1.9
2,481,598	+		EFB2_02345	0.75	-3.0
2,481,598	+		EFB2_02345	0.75	-2.0
2,481,598	+		EFB2_02345	0.75	+0.9
2,481,598	+		EFB2_02345	0.75	+0.4
2,481,599	-		EFB2_02345	0.75	+0.7
2,481,599	-		EFB2_02345	0.75	-1.8
2,481,599	-		EFB2_02345	0.75	+0.8
2,481,655	+		EFB2_02345	0.82	+3.0
2,481,655	+		EFB2_02345	0.82	+0.9
2,481,655	+		EFB2_02345	0.82	+0.2
2,481,655	+		EFB2_02345	0.82	-1.1
2,481,655	+		EFB2_02345	0.82	+1.0
2,481,656	-		EFB2_02345	0.82	-1.2
2,481,656	-		EFB2_02345	0.82	+2.1
2,481,656	-		EFB2_02345	0.82	-0.3
2,481,656	-		EFB2_02345	0.82	-0.1
2,481,656	-		EFB2_02345	0.82	-0.8
2,481,656	-		EFB2_02345	0.82	+1.2
2,481,656	-		EFB2_02345	0.82	-0.7
2,481,660	+		EFB2_02345	0.82	-2.5
2,481,661	-		EFB2_02345	0.82	+1.9
2,481,670	+		EFB2_02345	0.83	-1.6
2,481,671	-		EFB2_02345	0.84	+0.0
2,481,671	-		EFB2_02345	0.84	+1.2
2,481,673	+		EFB2_02345	0.84	+0.0
2,481,673	+		EFB2_02345	0.84	+1.6
2,481,673	+		EFB2_02345	0.84	-1.1
2,481,673	+		EFB2_02345	0.84	-2.3
2,481,673	+		EFB2_02345	0.84	-0.1
2,481,673	+		EFB2_02345	0.84	-0.8
2,481,673	+		EFB2_02345	0.84	-1.4
2,481,674	-		EFB2_02345	0.84	-1.1
2,481,674	-		EFB2_02345	0.84	+2.8
2,481,674	-		EFB2_02345	0.84	+1.4
2,481,799	+				-1.1
2,481,799	+				+0.0
2,481,799	+				+0.6
2,481,799	+				-2.0
2,481,799	+				-2.6
2,481,800	-				+0.6
2,481,800	-				+1.5
2,481,800	-				-2.3
2,481,811	+				-1.3
2,481,811	+				-2.0
2,481,811	+				-1.7
2,481,811	+				+1.7
2,481,811	+				+0.0
2,481,811	+				+0.2
2,481,812	-				+0.1
2,481,812	-				-0.1
2,481,812	-				-0.9
2,481,816	+				+4.1
2,481,816	+				-0.4
2,481,826	+				+0.6
2,481,826	+				-0.1
2,481,827	-				-1.3
2,481,827	-				-0.8
2,481,862	+				-3.5
2,481,862	+				+2.5
2,481,868	+				-0.1
2,481,868	+				-0.0
2,481,868	+				+1.7
2,481,868	+				-0.5
2,481,869	-				-0.3
2,481,869	-				-0.6
2,481,869	-				+0.4
2,481,869	-				+2.0
2,481,869	-				+2.0