Strain Fitness in Escherichia fergusonii Becca around EFB2_02052

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
2,202,470	+				-1.7
2,202,474	+				+0.7
2,202,485	-				-1.2
2,202,573	+				+0.1
2,202,573	+				-1.3
2,202,661	-				-0.4
2,202,670	+				-1.7
2,202,670	+				-2.1
2,202,760	-				-1.1
2,202,791	+				+0.8
2,202,791	+				+1.8
2,202,791	+				-2.8
2,202,791	+				+2.5
2,202,791	+				+0.3
2,202,792	-				+0.3
2,202,792	-				-0.6
2,202,800	+				+0.9
2,202,862	+				-0.8
2,202,862	+				-2.4
2,202,862	+				+1.1
2,202,862	+				+0.9
2,202,862	+				-1.8
2,202,862	+				-1.1
2,202,862	+				-1.5
2,202,862	+				-3.0
2,202,862	+				-0.9
2,202,862	+				-0.3
2,202,862	+				+0.3
2,202,862	+				-0.4
2,202,863	-				-1.6
2,202,863	-				+0.4
2,202,863	-				+1.6
2,202,863	-				+3.1
2,202,863	-				+1.9
2,202,863	-				-1.4
2,202,863	-				-1.4
2,202,863	-				-2.2
2,202,863	-				-0.3
2,202,872	+				+0.7
2,202,873	-				+4.0
2,202,882	+				-0.7
2,202,883	-				+1.6
2,202,883	-				+2.5
2,202,883	-				-2.4
2,202,914	+				+0.2
2,202,914	+				+0.5
2,202,914	+				-0.5
2,202,914	+				+2.4
2,202,914	+				+1.0
2,202,914	+				-0.7
2,202,914	+				+1.1
2,202,915	-				+4.5
2,202,915	-				-2.2
2,202,915	-				+2.4
2,202,915	-				+0.1
2,202,915	-				-3.2
2,202,915	-				-0.6
2,202,915	-				+1.5
2,202,915	-				-1.5
2,202,915	-				-0.9
2,202,915	-				+0.3
2,202,920	+				+0.3
2,202,920	+				-1.9
2,202,920	+				+1.0
2,202,920	+				-1.3
2,202,934	+				+0.3
2,202,934	+				-0.3
2,202,934	+				-0.5
2,202,935	-				-1.4
2,202,935	-				-0.4
2,202,935	-				-1.2
2,202,940	+				-1.8
2,202,940	+				+2.5
2,202,941	-				-2.2
2,202,948	+				+0.1
2,202,948	+				-1.6
2,202,948	+				-0.4
2,202,949	-				-2.0
2,202,949	-				-0.3
2,202,984	+				+0.4
2,202,993	+				-0.1
2,202,993	+				+1.7
2,202,994	-				+2.4
2,202,998	+				-0.3
2,202,999	-				-0.0
2,202,999	-				-1.1
2,203,004	+				-0.1
2,203,059	+				+0.3
2,203,059	+				-0.2
2,203,060	-				-0.7
2,203,066	-				-1.3
2,203,075	+				-0.6
2,203,090	+				-0.8
2,203,090	+				-0.8
2,203,091	-				-0.1
2,203,091	-				+0.1
2,203,097	+				+0.9
2,203,097	+				+0.6
2,203,098	-				-1.8
2,203,098	-				-1.9
2,203,098	-				+0.8
2,203,098	-				+3.0
2,203,122	+				-1.4
2,203,122	+				-0.1
2,203,122	+				-0.4
2,203,122	+				-2.8
2,203,122	+				-2.4
2,203,122	+				-2.0
2,203,122	+				+0.3
2,203,122	+				+0.1
2,203,122	+				+1.2
2,203,123	-				+0.9
2,203,123	-				+1.3
2,203,123	-				-2.4
2,203,140	+		EFB2_02051	0.14	+1.0
2,203,140	+		EFB2_02051	0.14	-2.5
2,203,140	+		EFB2_02051	0.14	+1.5
2,203,140	+		EFB2_02051	0.14	-1.6
2,203,141	-		EFB2_02051	0.14	-0.4
2,203,141	-		EFB2_02051	0.14	+2.4
2,203,141	-		EFB2_02051	0.14	-0.4
2,203,144	+		EFB2_02051	0.15	-0.6
2,203,144	+		EFB2_02051	0.15	-0.9
2,203,144	+		EFB2_02051	0.15	+0.7
2,203,144	+		EFB2_02051	0.15	-2.0
2,203,144	+		EFB2_02051	0.15	+0.2
2,203,144	+		EFB2_02051	0.15	+1.6
2,203,144	+		EFB2_02051	0.15	-2.5
2,203,144	+		EFB2_02051	0.15	+1.8
2,203,145	-		EFB2_02051	0.15	+1.9
2,203,145	-		EFB2_02051	0.15	+0.3
2,203,145	-		EFB2_02051	0.15	+0.9
2,203,145	-		EFB2_02051	0.15	-0.1
2,203,147	+		EFB2_02051	0.16	+1.9
2,203,147	+		EFB2_02051	0.16	-2.5
2,203,147	+		EFB2_02051	0.16	-1.5
2,203,148	-		EFB2_02051	0.16	+1.3
2,203,148	-		EFB2_02051	0.16	-1.4
2,203,187	+		EFB2_02051	0.27	-0.8
2,203,187	+		EFB2_02051	0.27	+0.9
2,203,188	-		EFB2_02051	0.27	-1.9
2,203,188	-		EFB2_02051	0.27	-1.1
2,203,204	+		EFB2_02051	0.32	-0.6
2,203,204	+		EFB2_02051	0.32	+1.4
2,203,204	+		EFB2_02051	0.32	+1.5
2,203,205	-		EFB2_02051	0.32	-0.6
2,203,205	-		EFB2_02051	0.32	+1.0
2,203,205	-		EFB2_02051	0.32	-1.6
2,203,205	-		EFB2_02051	0.32	-2.1
2,203,205	-		EFB2_02051	0.32	-1.6
2,203,316	+		EFB2_02051	0.64	+2.9
2,203,403	+		EFB2_02051	0.89	-0.2
2,203,403	+		EFB2_02051	0.89	+2.2
2,203,403	+		EFB2_02051	0.89	-0.7
2,203,404	-		EFB2_02051	0.89	-0.3
2,203,404	-		EFB2_02051	0.89	+1.3
2,203,548	+		EFB2_02052	0.18	-2.0
2,203,548	+		EFB2_02052	0.18	-1.3
2,203,548	+		EFB2_02052	0.18	+1.0
2,203,548	+		EFB2_02052	0.18	+4.0
2,203,548	+		EFB2_02052	0.18	+1.7
2,203,548	+		EFB2_02052	0.18	-0.9
2,203,549	-		EFB2_02052	0.18	-1.8
2,203,549	-		EFB2_02052	0.18	+0.9
2,203,574	+		EFB2_02052	0.22	-0.1
2,203,574	+		EFB2_02052	0.22	+2.5
2,203,575	-		EFB2_02052	0.22	+3.0
2,203,576	+		EFB2_02052	0.23	+0.0
2,203,636	+		EFB2_02052	0.33	+0.9
2,203,637	-		EFB2_02052	0.33	-3.0
2,203,675	+		EFB2_02052	0.40	-0.7
2,203,675	+		EFB2_02052	0.40	+1.7
2,203,675	+		EFB2_02052	0.40	+1.4
2,203,676	-		EFB2_02052	0.40	+0.5
2,203,676	-		EFB2_02052	0.40	+2.1
2,203,676	-		EFB2_02052	0.40	-2.4
2,203,676	-		EFB2_02052	0.40	+0.3
2,203,711	+		EFB2_02052	0.46	-2.1
2,203,711	+		EFB2_02052	0.46	+0.6
2,203,711	+		EFB2_02052	0.46	-2.4
2,203,711	+		EFB2_02052	0.46	+1.9
2,203,711	+		EFB2_02052	0.46	+0.1
2,203,712	-		EFB2_02052	0.46	+0.9
2,203,712	-		EFB2_02052	0.46	-3.5
2,203,712	-		EFB2_02052	0.46	+3.8
2,203,712	-		EFB2_02052	0.46	-1.8
2,203,712	-		EFB2_02052	0.46	-0.6
2,203,712	-		EFB2_02052	0.46	-0.6
2,203,740	-		EFB2_02052	0.51	-2.4
2,203,746	+		EFB2_02052	0.52	-1.6
2,203,747	-		EFB2_02052	0.52	-0.9
2,203,747	-		EFB2_02052	0.52	+1.7
2,203,749	-		EFB2_02052	0.53	-1.2
2,203,836	+		EFB2_02052	0.68	+1.6
2,203,876	+		EFB2_02052	0.74	-2.0
2,203,876	+		EFB2_02052	0.74	-1.4
2,203,876	+		EFB2_02052	0.74	+1.2
2,203,876	+		EFB2_02052	0.74	-3.0
2,203,876	+		EFB2_02052	0.74	-1.9
2,203,879	+		EFB2_02052	0.75	-0.8
2,203,880	-		EFB2_02052	0.75	+0.7
2,203,920	+		EFB2_02052	0.82	-2.2
2,203,920	+		EFB2_02052	0.82	-0.3
2,203,920	+		EFB2_02052	0.82	-1.8
2,203,920	+		EFB2_02052	0.82	-0.2
2,203,920	+		EFB2_02052	0.82	+1.1
2,203,920	+		EFB2_02052	0.82	+1.4
2,203,920	+		EFB2_02052	0.82	-0.1
2,203,920	+		EFB2_02052	0.82	-0.4
2,203,920	+		EFB2_02052	0.82	-1.1
2,203,920	+		EFB2_02052	0.82	-1.6
2,203,920	+		EFB2_02052	0.82	-3.2
2,203,921	-		EFB2_02052	0.82	-2.1
2,203,921	-		EFB2_02052	0.82	-1.9
2,203,921	-		EFB2_02052	0.82	+0.5
2,203,921	-		EFB2_02052	0.82	+0.9
2,203,921	-		EFB2_02052	0.82	-0.4
2,203,921	-		EFB2_02052	0.82	-0.7
2,203,921	-		EFB2_02052	0.82	+1.1
2,203,921	-		EFB2_02052	0.82	-1.6
2,203,921	-		EFB2_02052	0.82	+0.1
2,203,954	+		EFB2_02052	0.88	-2.7
2,203,954	+		EFB2_02052	0.88	-0.6
2,203,954	+		EFB2_02052	0.88	+1.9
2,203,955	-		EFB2_02052	0.88	+1.2
2,203,978	+				-2.0
2,203,979	-				-1.1
2,203,981	+				+2.3
2,203,981	+				-2.0
2,204,010	+				+2.3
2,204,010	+				-2.9
2,204,010	+				+1.2
2,204,010	+				+1.4
2,204,010	+				-0.6
2,204,010	+				-1.6
2,204,010	+				-0.3
2,204,010	+				-1.0
2,204,011	-				-2.7
2,204,011	-				-1.7
2,204,011	-				+0.9
2,204,011	-				+0.4
2,204,021	+				-2.2
2,204,021	+				-2.0
2,204,022	-				-1.4
2,204,022	-				+2.9
2,204,029	-				-2.0
2,204,065	+				-1.6
2,204,065	+				-0.9
2,204,065	+				-1.8
2,204,065	+				+0.6
2,204,097	+				+0.5
2,204,155	+				+1.6
2,204,155	+				+0.1
2,204,155	+				-0.3
2,204,156	-				+2.3
2,204,156	-				-0.8
2,204,160	+				-3.1
2,204,160	+				-0.1
2,204,160	+				-2.2
2,204,160	+				+2.5
2,204,160	+				-1.6
2,204,160	+				-1.5
2,204,160	+				+0.9
2,204,161	-				+0.6
2,204,161	-				-1.9
2,204,161	-				-0.1
2,204,161	-				+0.4
2,204,161	-				-1.9
2,204,161	-				+2.2
2,204,161	-				-2.4
2,204,161	-				+2.6
2,204,161	-				+0.4
2,204,161	-				+0.3
2,204,161	-				-0.7
2,204,161	-				+1.3
2,204,163	+				+1.2
2,204,163	+				+0.2
2,204,163	+				-0.8
2,204,163	+				-1.6
2,204,163	+				+3.4
2,204,163	+				+0.7
2,204,164	-				-1.9
2,204,164	-				+2.6
2,204,164	-				+0.3
2,204,164	-				-0.7
2,204,164	-				-0.8
2,204,164	-				+0.8
2,204,168	+				-0.4
2,204,201	+				+2.1
2,204,202	-				+0.4
2,204,202	-				+1.9
2,204,234	+				-0.5
2,204,234	+				-2.4
2,204,234	+				-0.9
2,204,234	+				+0.1
2,204,234	+				+0.8
2,204,234	+				-2.0
2,204,234	+				+1.3
2,204,234	+				-1.8
2,204,234	+				+0.8
2,204,234	+				-0.1
2,204,234	+				+0.9
2,204,235	-				+1.3
2,204,235	-				-2.3
2,204,235	-				-1.6
2,204,235	-				-2.5
2,204,235	-				-1.0
2,204,235	-				-1.9
2,204,235	-				+1.9
2,204,257	+		EFB2_02053	0.12	+0.8
2,204,257	+		EFB2_02053	0.12	-0.3
2,204,257	+		EFB2_02053	0.12	+0.6
2,204,297	-		EFB2_02053	0.17	-1.6
2,204,357	+		EFB2_02053	0.23	+1.4
2,204,357	+		EFB2_02053	0.23	+1.4
2,204,358	-		EFB2_02053	0.23	+0.3
2,204,358	-		EFB2_02053	0.23	+0.5
2,204,358	-		EFB2_02053	0.23	+1.6
2,204,358	-		EFB2_02053	0.23	-2.2
2,204,358	-		EFB2_02053	0.23	-0.3
2,204,372	+		EFB2_02053	0.25	-0.5
2,204,372	+		EFB2_02053	0.25	-0.6
2,204,372	+		EFB2_02053	0.25	+0.2
2,204,372	+		EFB2_02053	0.25	+1.0
2,204,372	+		EFB2_02053	0.25	+0.9
2,204,372	+		EFB2_02053	0.25	+1.5
2,204,372	+		EFB2_02053	0.25	-0.4
2,204,372	+		EFB2_02053	0.25	-1.4
2,204,372	+		EFB2_02053	0.25	+0.6
2,204,372	+		EFB2_02053	0.25	-2.2
2,204,372	+		EFB2_02053	0.25	-2.7
2,204,372	+		EFB2_02053	0.25	-1.0
2,204,372	+		EFB2_02053	0.25	-0.4
2,204,372	+		EFB2_02053	0.25	+0.1
2,204,372	+		EFB2_02053	0.25	+0.2
2,204,372	+		EFB2_02053	0.25	+2.9
2,204,372	+		EFB2_02053	0.25	+1.0
2,204,372	+		EFB2_02053	0.25	+0.5
2,204,372	+		EFB2_02053	0.25	-1.7
2,204,372	+		EFB2_02053	0.25	-1.4
2,204,372	+		EFB2_02053	0.25	-1.9
2,204,372	+		EFB2_02053	0.25	+0.1
2,204,372	+		EFB2_02053	0.25	+3.6
2,204,372	+		EFB2_02053	0.25	-1.4
2,204,372	+		EFB2_02053	0.25	-1.8
2,204,372	+		EFB2_02053	0.25	-1.4
2,204,372	+		EFB2_02053	0.25	-0.7
2,204,373	-		EFB2_02053	0.25	-0.6
2,204,373	-		EFB2_02053	0.25	+2.9
2,204,373	-		EFB2_02053	0.25	-0.3
2,204,373	-		EFB2_02053	0.25	-1.4
2,204,373	-		EFB2_02053	0.25	+0.3
2,204,373	-		EFB2_02053	0.25	+0.6
2,204,373	-		EFB2_02053	0.25	+1.1
2,204,373	-		EFB2_02053	0.25	-0.9
2,204,373	-		EFB2_02053	0.25	-1.8
2,204,373	-		EFB2_02053	0.25	-1.0
2,204,373	-		EFB2_02053	0.25	+1.6
2,204,373	-		EFB2_02053	0.25	+3.0
2,204,373	-		EFB2_02053	0.25	+2.0
2,204,373	-		EFB2_02053	0.25	-1.2
2,204,373	-		EFB2_02053	0.25	+0.1
2,204,373	-		EFB2_02053	0.25	+0.7
2,204,373	-		EFB2_02053	0.25	+0.5
2,204,373	-		EFB2_02053	0.25	-1.7
2,204,373	-		EFB2_02053	0.25	+1.3
2,204,373	-		EFB2_02053	0.25	-2.2
2,204,373	-		EFB2_02053	0.25	-1.8
2,204,373	-		EFB2_02053	0.25	-0.1
2,204,373	-		EFB2_02053	0.25	+0.7
2,204,374	+		EFB2_02053	0.25	-2.3
2,204,374	+		EFB2_02053	0.25	+1.7
2,204,374	+		EFB2_02053	0.25	+2.2
2,204,374	+		EFB2_02053	0.25	+0.3
2,204,374	+		EFB2_02053	0.25	-2.3
2,204,374	+		EFB2_02053	0.25	+2.1
2,204,374	+		EFB2_02053	0.25	+1.5
2,204,374	+		EFB2_02053	0.25	-2.2
2,204,375	-		EFB2_02053	0.25	-0.6
2,204,375	-		EFB2_02053	0.25	-1.9
2,204,375	-		EFB2_02053	0.25	-0.7
2,204,375	-		EFB2_02053	0.25	-0.1
2,204,486	+		EFB2_02053	0.38	-1.3
2,204,525	-		EFB2_02053	0.42	+1.9
2,204,534	+		EFB2_02053	0.43	-2.3
2,204,535	-		EFB2_02053	0.43	+1.3
2,204,677	+		EFB2_02053	0.59	+0.1
2,204,677	+		EFB2_02053	0.59	-1.6
2,204,677	+		EFB2_02053	0.59	-1.6
2,204,678	-		EFB2_02053	0.59	+2.4
2,204,691	+		EFB2_02053	0.61	+1.3
2,204,692	-		EFB2_02053	0.61	+1.1
2,204,700	+		EFB2_02053	0.62	+0.5
2,204,701	-		EFB2_02053	0.62	-1.1
2,204,701	-		EFB2_02053	0.62	+1.4
2,204,701	-		EFB2_02053	0.62	+0.0
2,204,712	+		EFB2_02053	0.63	+2.9
2,204,713	-		EFB2_02053	0.63	+2.2
2,204,799	-		EFB2_02053	0.73	+1.3
2,204,830	-		EFB2_02053	0.77	+1.4
2,204,915	-		EFB2_02053	0.86	+1.0
2,204,915	-		EFB2_02053	0.86	+1.5
2,204,945	+		EFB2_02053	0.90	+1.8
2,204,945	+		EFB2_02053	0.90	-1.0
2,204,945	+		EFB2_02053	0.90	+1.3
2,204,946	-		EFB2_02053	0.90	-1.6
2,204,969	-				+1.3