Strain Fitness in Escherichia fergusonii Becca around EFB2_01603

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
1,677,377	-				-1.3
1,677,400	-				+1.2
1,677,427	+				+0.9
1,677,471	+				+0.0
1,677,471	+				+2.1
1,677,472	-				-3.0
1,677,472	-				-0.7
1,677,472	-				+0.8
1,677,472	-				-0.2
1,677,472	-				-0.2
1,677,472	-				+1.6
1,677,484	+				+0.7
1,677,484	+				+0.2
1,677,484	+				+1.4
1,677,484	+				-3.7
1,677,485	-				-0.2
1,677,485	-				-3.0
1,677,485	-				-1.5
1,677,485	-				+0.4
1,677,485	-				-3.6
1,677,485	-				-3.4
1,677,485	-				+5.4
1,677,486	+				-3.3
1,677,486	+				-1.2
1,677,486	+				+1.9
1,677,486	+				-0.9
1,677,487	-				-1.4
1,677,487	-				-0.6
1,677,487	-				-0.6
1,677,487	-				+1.1
1,677,487	-				-3.7
1,677,487	-				-0.7
1,677,487	-				+0.2
1,677,487	-				-3.4
1,677,487	-				-2.6
1,677,487	-				+0.4
1,677,487	-				-2.8
1,677,487	-				+1.0
1,677,511	+		EFB2_01602	0.12	+1.8
1,677,526	+		EFB2_01602	0.13	-1.7
1,677,527	-		EFB2_01602	0.13	-1.6
1,677,527	-		EFB2_01602	0.13	+0.6
1,677,532	+		EFB2_01602	0.14	+1.0
1,677,532	+		EFB2_01602	0.14	+0.8
1,677,533	-		EFB2_01602	0.14	+0.4
1,677,533	-		EFB2_01602	0.14	-3.9
1,677,533	-		EFB2_01602	0.14	-1.8
1,677,533	-		EFB2_01602	0.14	+0.9
1,677,533	-		EFB2_01602	0.14	+1.5
1,677,548	+		EFB2_01602	0.15	-2.6
1,677,548	+		EFB2_01602	0.15	+0.3
1,677,548	+		EFB2_01602	0.15	+0.0
1,677,548	+		EFB2_01602	0.15	+0.5
1,677,549	-		EFB2_01602	0.16	-1.4
1,677,553	+		EFB2_01602	0.16	+1.2
1,677,553	+		EFB2_01602	0.16	+1.7
1,677,553	+		EFB2_01602	0.16	-0.7
1,677,554	-		EFB2_01602	0.16	+0.8
1,677,554	-		EFB2_01602	0.16	-1.7
1,677,554	-		EFB2_01602	0.16	-1.2
1,677,554	-		EFB2_01602	0.16	+1.1
1,677,596	+		EFB2_01602	0.20	+1.1
1,677,597	-		EFB2_01602	0.21	-2.9
1,677,597	-		EFB2_01602	0.21	-0.2
1,677,622	+		EFB2_01602	0.23	-3.1
1,677,622	+		EFB2_01602	0.23	-1.4
1,677,622	+		EFB2_01602	0.23	+1.4
1,677,623	-		EFB2_01602	0.23	+1.1
1,677,623	-		EFB2_01602	0.23	+0.0
1,677,623	-		EFB2_01602	0.23	-2.5
1,677,664	+		EFB2_01602	0.27	-3.2
1,677,664	+		EFB2_01602	0.27	+1.6
1,677,664	+		EFB2_01602	0.27	+1.1
1,677,664	+		EFB2_01602	0.27	+1.4
1,677,664	+		EFB2_01602	0.27	-2.2
1,677,664	+		EFB2_01602	0.27	-0.7
1,677,664	+		EFB2_01602	0.27	-1.2
1,677,664	+		EFB2_01602	0.27	-1.2
1,677,664	+		EFB2_01602	0.27	+1.2
1,677,664	+		EFB2_01602	0.27	-2.6
1,677,664	+		EFB2_01602	0.27	-0.6
1,677,664	+		EFB2_01602	0.27	+1.2
1,677,664	+		EFB2_01602	0.27	-0.5
1,677,664	+		EFB2_01602	0.27	-2.5
1,677,665	-		EFB2_01602	0.28	-0.6
1,677,665	-		EFB2_01602	0.28	-1.9
1,677,665	-		EFB2_01602	0.28	-0.2
1,677,665	-		EFB2_01602	0.28	+0.6
1,677,665	-		EFB2_01602	0.28	-1.7
1,677,665	-		EFB2_01602	0.28	+0.2
1,677,665	-		EFB2_01602	0.28	+0.3
1,677,665	-		EFB2_01602	0.28	-0.5
1,677,665	-		EFB2_01602	0.28	-0.8
1,677,665	-		EFB2_01602	0.28	-3.4
1,677,665	-		EFB2_01602	0.28	-0.1
1,677,665	-		EFB2_01602	0.28	+0.6
1,677,665	-		EFB2_01602	0.28	+0.2
1,677,665	-		EFB2_01602	0.28	-2.2
1,677,665	-		EFB2_01602	0.28	-3.8
1,677,665	-		EFB2_01602	0.28	+1.6
1,677,668	+		EFB2_01602	0.28	-0.6
1,677,668	+		EFB2_01602	0.28	-0.4
1,677,668	+		EFB2_01602	0.28	+1.0
1,677,668	+		EFB2_01602	0.28	+0.5
1,677,668	+		EFB2_01602	0.28	+0.0
1,677,668	+		EFB2_01602	0.28	-2.6
1,677,669	-		EFB2_01602	0.28	+0.7
1,677,682	+		EFB2_01602	0.29	-0.9
1,677,682	+		EFB2_01602	0.29	-1.9
1,677,683	-		EFB2_01602	0.29	-1.2
1,677,702	+		EFB2_01602	0.31	+3.1
1,677,702	+		EFB2_01602	0.31	+2.6
1,677,702	+		EFB2_01602	0.31	-2.7
1,677,702	+		EFB2_01602	0.31	-3.2
1,677,702	+		EFB2_01602	0.31	-0.6
1,677,702	+		EFB2_01602	0.31	-1.3
1,677,702	+		EFB2_01602	0.31	-2.6
1,677,702	+		EFB2_01602	0.31	-1.5
1,677,702	+		EFB2_01602	0.31	+1.4
1,677,702	+		EFB2_01602	0.31	-2.7
1,677,702	+		EFB2_01602	0.31	+0.6
1,677,703	-		EFB2_01602	0.31	+0.5
1,677,703	-		EFB2_01602	0.31	+0.5
1,677,703	-		EFB2_01602	0.31	-0.2
1,677,703	-		EFB2_01602	0.31	+0.5
1,677,703	-		EFB2_01602	0.31	+3.6
1,677,703	-		EFB2_01602	0.31	-1.9
1,677,703	-		EFB2_01602	0.31	+0.5
1,677,713	-		EFB2_01602	0.33	-0.2
1,677,713	-		EFB2_01602	0.33	-1.6
1,677,724	+		EFB2_01602	0.34	+0.5
1,677,724	+		EFB2_01602	0.34	+1.3
1,677,724	+		EFB2_01602	0.34	-0.0
1,677,724	+		EFB2_01602	0.34	-1.6
1,677,724	+		EFB2_01602	0.34	-0.7
1,677,725	-		EFB2_01602	0.34	-1.5
1,677,725	-		EFB2_01602	0.34	-1.1
1,677,732	+		EFB2_01602	0.34	-0.5
1,677,732	+		EFB2_01602	0.34	-1.1
1,677,732	+		EFB2_01602	0.34	+0.2
1,677,732	+		EFB2_01602	0.34	+0.8
1,677,733	-		EFB2_01602	0.35	-0.3
1,677,733	-		EFB2_01602	0.35	+0.1
1,677,733	-		EFB2_01602	0.35	-1.1
1,677,733	-		EFB2_01602	0.35	-2.3
1,677,799	+		EFB2_01602	0.41	-2.2
1,677,800	-		EFB2_01602	0.41	-0.4
1,677,818	-		EFB2_01602	0.43	-0.4
1,677,859	+		EFB2_01602	0.48	+1.0
1,677,859	+		EFB2_01602	0.48	+1.1
1,677,859	+		EFB2_01602	0.48	+0.5
1,677,859	+		EFB2_01602	0.48	-1.3
1,677,859	+		EFB2_01602	0.48	+1.1
1,677,860	-		EFB2_01602	0.48	+0.4
1,677,860	-		EFB2_01602	0.48	-0.2
1,677,860	-		EFB2_01602	0.48	+1.6
1,677,871	-		EFB2_01602	0.49	-0.3
1,677,883	+		EFB2_01602	0.50	+1.5
1,677,883	+		EFB2_01602	0.50	+2.9
1,677,883	+		EFB2_01602	0.50	+1.5
1,677,883	+		EFB2_01602	0.50	-0.6
1,677,883	+		EFB2_01602	0.50	-2.3
1,677,883	+		EFB2_01602	0.50	-2.0
1,677,883	+		EFB2_01602	0.50	+2.3
1,677,883	+		EFB2_01602	0.50	+2.3
1,677,883	+		EFB2_01602	0.50	+1.7
1,677,883	+		EFB2_01602	0.50	-2.6
1,677,883	+		EFB2_01602	0.50	+0.5
1,677,883	+		EFB2_01602	0.50	-2.5
1,677,883	+		EFB2_01602	0.50	+0.6
1,677,883	+		EFB2_01602	0.50	-0.6
1,677,883	+		EFB2_01602	0.50	-0.9
1,677,883	+		EFB2_01602	0.50	+1.1
1,677,884	-		EFB2_01602	0.50	+2.4
1,677,884	-		EFB2_01602	0.50	-2.1
1,677,884	-		EFB2_01602	0.50	+1.0
1,677,884	-		EFB2_01602	0.50	+0.6
1,677,884	-		EFB2_01602	0.50	+0.3
1,677,884	-		EFB2_01602	0.50	+0.0
1,677,884	-		EFB2_01602	0.50	-0.3
1,677,884	-		EFB2_01602	0.50	+0.5
1,677,884	-		EFB2_01602	0.50	+1.1
1,677,884	-		EFB2_01602	0.50	-2.4
1,677,884	-		EFB2_01602	0.50	-2.4
1,677,884	-		EFB2_01602	0.50	+0.5
1,677,884	-		EFB2_01602	0.50	+0.2
1,677,884	-		EFB2_01602	0.50	-1.0
1,677,884	-		EFB2_01602	0.50	-0.0
1,677,884	-		EFB2_01602	0.50	-1.8
1,677,884	-		EFB2_01602	0.50	-0.4
1,677,884	-		EFB2_01602	0.50	-1.5
1,677,884	-		EFB2_01602	0.50	+0.2
1,677,884	-		EFB2_01602	0.50	-0.5
1,677,884	-		EFB2_01602	0.50	+2.3
1,677,884	-		EFB2_01602	0.50	+1.5
1,677,884	-		EFB2_01602	0.50	+1.9
1,677,884	-		EFB2_01602	0.50	-1.3
1,677,884	-		EFB2_01602	0.50	+0.3
1,677,891	+		EFB2_01602	0.51	-1.9
1,677,891	+		EFB2_01602	0.51	-1.6
1,677,891	+		EFB2_01602	0.51	-2.8
1,677,892	-		EFB2_01602	0.51	-1.2
1,677,892	-		EFB2_01602	0.51	+0.2
1,677,892	-		EFB2_01602	0.51	-0.1
1,677,892	-		EFB2_01602	0.51	+0.7
1,677,892	-		EFB2_01602	0.51	-0.9
1,677,926	-		EFB2_01602	0.54	+0.2
1,677,956	-		EFB2_01602	0.58	-1.4
1,677,956	-		EFB2_01602	0.58	+1.0
1,677,986	+		EFB2_01602	0.61	-3.0
1,677,986	+		EFB2_01602	0.61	+0.1
1,677,986	+		EFB2_01602	0.61	-2.4
1,677,987	-		EFB2_01602	0.61	-0.5
1,678,006	-		EFB2_01602	0.63	+0.6
1,678,076	-		EFB2_01602	0.70	+1.0
1,678,078	+		EFB2_01602	0.70	-1.3
1,678,078	+		EFB2_01602	0.70	-1.1
1,678,078	+		EFB2_01602	0.70	-1.0
1,678,078	+		EFB2_01602	0.70	+2.3
1,678,078	+		EFB2_01602	0.70	-0.3
1,678,078	+		EFB2_01602	0.70	-1.8
1,678,079	-		EFB2_01602	0.70	-0.9
1,678,079	-		EFB2_01602	0.70	-0.3
1,678,079	-		EFB2_01602	0.70	+2.6
1,678,079	-		EFB2_01602	0.70	-0.5
1,678,079	-		EFB2_01602	0.70	-0.8
1,678,079	-		EFB2_01602	0.70	+0.4
1,678,079	-		EFB2_01602	0.70	-2.2
1,678,079	-		EFB2_01602	0.70	-2.5
1,678,082	+		EFB2_01602	0.71	-2.7
1,678,082	+		EFB2_01602	0.71	+0.5
1,678,082	+		EFB2_01602	0.71	+0.2
1,678,082	+		EFB2_01602	0.71	+1.9
1,678,082	+		EFB2_01602	0.71	-1.3
1,678,082	+		EFB2_01602	0.71	+0.8
1,678,082	+		EFB2_01602	0.71	-0.1
1,678,082	+		EFB2_01602	0.71	+0.0
1,678,082	+		EFB2_01602	0.71	+0.3
1,678,083	-		EFB2_01602	0.71	+0.7
1,678,083	-		EFB2_01602	0.71	+1.0
1,678,083	-		EFB2_01602	0.71	+1.3
1,678,083	-		EFB2_01602	0.71	-0.2
1,678,083	-		EFB2_01602	0.71	-0.7
1,678,083	-		EFB2_01602	0.71	+0.3
1,678,083	-		EFB2_01602	0.71	-0.1
1,678,083	-		EFB2_01602	0.71	-2.0
1,678,083	-		EFB2_01602	0.71	+1.3
1,678,083	-		EFB2_01602	0.71	+0.5
1,678,083	-		EFB2_01602	0.71	-0.4
1,678,083	-		EFB2_01602	0.71	-1.6
1,678,114	+		EFB2_01602	0.74	-0.7
1,678,115	-		EFB2_01602	0.74	+1.6
1,678,134	+		EFB2_01602	0.76	-3.5
1,678,135	-		EFB2_01602	0.76	-3.0
1,678,135	-		EFB2_01602	0.76	-2.2
1,678,135	-		EFB2_01602	0.76	-0.6
1,678,153	+		EFB2_01602	0.78	+0.3
1,678,154	-		EFB2_01602	0.78	-0.7
1,678,154	-		EFB2_01602	0.78	-1.2
1,678,154	-		EFB2_01602	0.78	+0.4
1,678,154	-		EFB2_01602	0.78	+1.6
1,678,154	-		EFB2_01602	0.78	-2.0
1,678,154	-		EFB2_01602	0.78	-0.6
1,678,162	+		EFB2_01602	0.79	+0.0
1,678,162	+		EFB2_01602	0.79	-1.8
1,678,162	+		EFB2_01602	0.79	-1.6
1,678,163	-		EFB2_01602	0.79	-0.8
1,678,163	-		EFB2_01602	0.79	-0.7
1,678,163	-		EFB2_01602	0.79	+1.9
1,678,198	+		EFB2_01602	0.83	-2.6
1,678,198	+		EFB2_01602	0.83	-1.0
1,678,198	+		EFB2_01602	0.83	-0.9
1,678,198	+		EFB2_01602	0.83	-0.0
1,678,198	+		EFB2_01602	0.83	+1.3
1,678,198	+		EFB2_01602	0.83	-1.5
1,678,199	-		EFB2_01602	0.83	+1.3
1,678,199	-		EFB2_01602	0.83	-0.2
1,678,199	-		EFB2_01602	0.83	-2.3
1,678,199	-		EFB2_01602	0.83	+1.7
1,678,216	+		EFB2_01602	0.84	-2.6
1,678,246	-		EFB2_01602	0.88	-0.2
1,678,290	-				-0.2
1,678,317	+				-1.6
1,678,318	-				-1.5
1,678,318	-				-0.1
1,678,318	-				+1.4
1,678,318	-				-0.7
1,678,318	-				-1.9
1,678,328	-				-3.6
1,678,345	+				-0.9
1,678,346	-				+1.1
1,678,346	-				-2.8
1,678,346	-				-2.8
1,678,346	-				+0.1
1,678,371	+				-1.1
1,678,371	+				+0.9
1,678,371	+				-1.1
1,678,371	+				-0.0
1,678,371	+				-0.3
1,678,371	+				+2.6
1,678,371	+				+0.1
1,678,371	+				-1.9
1,678,372	-				-0.2
1,678,372	-				+0.0
1,678,430	-				+0.7
1,678,465	+				+1.2
1,678,465	+				+1.0
1,678,466	-				-2.7
1,678,466	-				-1.8
1,678,516	-		EFB2_01603	0.13	+0.3
1,678,516	-		EFB2_01603	0.13	-1.9
1,678,516	-		EFB2_01603	0.13	-1.8
1,678,545	-		EFB2_01603	0.15	-2.7
1,678,545	-		EFB2_01603	0.15	-0.2
1,678,545	-		EFB2_01603	0.15	-2.2
1,678,545	-		EFB2_01603	0.15	-1.5
1,678,545	-		EFB2_01603	0.15	+1.1
1,678,571	+		EFB2_01603	0.17	+2.6
1,678,600	+		EFB2_01603	0.20	-0.4
1,678,600	+		EFB2_01603	0.20	+2.1
1,678,600	+		EFB2_01603	0.20	-1.2
1,678,601	-		EFB2_01603	0.20	+0.4
1,678,627	+		EFB2_01603	0.22	-0.9
1,678,627	+		EFB2_01603	0.22	-1.0
1,678,627	+		EFB2_01603	0.22	+3.4
1,678,628	-		EFB2_01603	0.22	-3.2
1,678,628	-		EFB2_01603	0.22	+0.9
1,678,630	+		EFB2_01603	0.22	-0.2
1,678,631	-		EFB2_01603	0.23	+0.2
1,678,673	+		EFB2_01603	0.26	+1.4
1,678,673	+		EFB2_01603	0.26	+1.1
1,678,674	-		EFB2_01603	0.26	+0.7
1,678,674	-		EFB2_01603	0.26	-2.0
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