Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04307

Experiment: D-Raffinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04305 and BACOVA_04306 are separated by 60 nucleotidesBACOVA_04306 and BACOVA_04307 are separated by 37 nucleotidesBACOVA_04307 and BACOVA_04308 are separated by 90 nucleotidesBACOVA_04308 and BACOVA_04309 are separated by 321 nucleotides BACOVA_04305: BACOVA_04305 - putative rRNA large subunit m3Psi methyltransferase RlmH, at 196,356 to 196,829 _04305 BACOVA_04306: BACOVA_04306 - hypothetical protein, at 196,890 to 197,525 _04306 BACOVA_04307: BACOVA_04307 - preQ(1) synthase, at 197,563 to 198,027 _04307 BACOVA_04308: BACOVA_04308 - hypothetical protein, at 198,118 to 198,255 _04308 BACOVA_04309: BACOVA_04309 - protein ExsB, at 198,577 to 199,236 _04309 Position (kb) 197 198 199Strain fitness (log2 ratio) -2 -1 0 1 2at 196.618 kb on - strand, within BACOVA_04305at 196.658 kb on - strand, within BACOVA_04305at 196.658 kb on - strand, within BACOVA_04305at 196.658 kb on - strand, within BACOVA_04305at 196.658 kb on - strand, within BACOVA_04305at 196.796 kb on + strandat 196.796 kb on + strandat 196.796 kb on + strandat 196.796 kb on + strandat 196.797 kb on - strandat 196.798 kb on + strandat 196.799 kb on - strandat 196.832 kb on + strandat 196.833 kb on - strandat 196.865 kb on + strandat 196.866 kb on - strandat 196.867 kb on + strandat 196.868 kb on - strandat 196.868 kb on - strandat 196.868 kb on - strandat 196.873 kb on - strandat 196.910 kb on + strandat 196.912 kb on + strandat 196.912 kb on + strandat 196.923 kb on - strandat 196.949 kb on + strandat 196.949 kb on + strandat 196.953 kb on - strandat 197.008 kb on - strand, within BACOVA_04306at 197.043 kb on + strand, within BACOVA_04306at 197.043 kb on + strand, within BACOVA_04306at 197.065 kb on + strand, within BACOVA_04306at 197.066 kb on - strand, within BACOVA_04306at 197.066 kb on - strand, within BACOVA_04306at 197.066 kb on - strand, within BACOVA_04306at 197.107 kb on + strand, within BACOVA_04306at 197.118 kb on - strand, within BACOVA_04306at 197.124 kb on + strand, within BACOVA_04306at 197.129 kb on + strand, within BACOVA_04306at 197.129 kb on + strand, within BACOVA_04306at 197.198 kb on + strand, within BACOVA_04306at 197.304 kb on + strand, within BACOVA_04306at 197.305 kb on - strand, within BACOVA_04306at 197.306 kb on + strand, within BACOVA_04306at 197.306 kb on + strand, within BACOVA_04306at 197.306 kb on + strand, within BACOVA_04306at 197.306 kb on + strand, within BACOVA_04306at 197.307 kb on - strand, within BACOVA_04306at 197.307 kb on - strand, within BACOVA_04306at 197.307 kb on - strand, within BACOVA_04306at 197.307 kb on - strand, within BACOVA_04306at 197.329 kb on + strand, within BACOVA_04306at 197.330 kb on - strand, within BACOVA_04306at 197.348 kb on - strand, within BACOVA_04306at 197.348 kb on - strand, within BACOVA_04306at 197.363 kb on - strand, within BACOVA_04306at 197.459 kb on + strand, within BACOVA_04306at 197.478 kb on - strandat 197.491 kb on + strandat 197.491 kb on + strandat 197.491 kb on + strandat 197.543 kb on - strandat 197.555 kb on + strandat 197.559 kb on + strandat 197.559 kb on + strandat 197.560 kb on - strandat 197.560 kb on - strandat 197.650 kb on - strand, within BACOVA_04307at 197.669 kb on - strand, within BACOVA_04307at 197.669 kb on - strand, within BACOVA_04307at 197.684 kb on - strand, within BACOVA_04307at 197.688 kb on - strand, within BACOVA_04307at 197.717 kb on + strand, within BACOVA_04307at 197.722 kb on + strand, within BACOVA_04307at 197.727 kb on + strand, within BACOVA_04307at 197.778 kb on - strand, within BACOVA_04307at 197.810 kb on - strand, within BACOVA_04307at 197.830 kb on - strand, within BACOVA_04307at 197.833 kb on + strand, within BACOVA_04307at 197.859 kb on + strand, within BACOVA_04307at 197.899 kb on + strand, within BACOVA_04307at 197.926 kb on - strand, within BACOVA_04307at 197.958 kb on - strand, within BACOVA_04307at 197.987 kb on - strandat 198.032 kb on + strandat 198.033 kb on - strandat 198.033 kb on - strandat 198.042 kb on - strandat 198.046 kb on + strandat 198.155 kb on + strand, within BACOVA_04308at 198.178 kb on + strand, within BACOVA_04308at 198.179 kb on - strand, within BACOVA_04308at 198.183 kb on + strand, within BACOVA_04308at 198.206 kb on - strand, within BACOVA_04308at 198.212 kb on + strand, within BACOVA_04308at 198.272 kb on - strandat 198.375 kb on + strandat 198.401 kb on + strandat 198.404 kb on + strandat 198.418 kb on + strandat 198.437 kb on + strandat 198.438 kb on - strandat 198.438 kb on - strandat 198.476 kb on + strandat 198.516 kb on + strandat 198.517 kb on - strandat 198.565 kb on + strandat 198.569 kb on + strandat 198.569 kb on + strandat 198.570 kb on - strandat 198.570 kb on - strandat 198.669 kb on + strand, within BACOVA_04309at 198.670 kb on - strand, within BACOVA_04309at 198.671 kb on + strand, within BACOVA_04309at 198.671 kb on + strand, within BACOVA_04309at 198.745 kb on - strand, within BACOVA_04309at 198.766 kb on - strand, within BACOVA_04309at 198.811 kb on - strand, within BACOVA_04309at 198.822 kb on + strand, within BACOVA_04309at 198.888 kb on + strand, within BACOVA_04309at 198.892 kb on - strand, within BACOVA_04309at 198.908 kb on + strand, within BACOVA_04309at 198.909 kb on - strand, within BACOVA_04309at 198.910 kb on + strand, within BACOVA_04309at 198.910 kb on + strand, within BACOVA_04309at 198.911 kb on - strand, within BACOVA_04309at 198.911 kb on - strand, within BACOVA_04309at 198.939 kb on + strand, within BACOVA_04309at 198.940 kb on - strand, within BACOVA_04309at 198.960 kb on + strand, within BACOVA_04309at 198.960 kb on + strand, within BACOVA_04309at 198.961 kb on - strand, within BACOVA_04309at 198.961 kb on - strand, within BACOVA_04309at 198.969 kb on + strand, within BACOVA_04309at 199.003 kb on - strand, within BACOVA_04309at 199.003 kb on - strand, within BACOVA_04309at 199.021 kb on - strand, within BACOVA_04309at 199.027 kb on + strand, within BACOVA_04309

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose 10 mM (C)
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196,618 - BACOVA_04305 0.55 -1.0
196,658 - BACOVA_04305 0.64 +0.7
196,658 - BACOVA_04305 0.64 +0.6
196,658 - BACOVA_04305 0.64 -0.0
196,658 - BACOVA_04305 0.64 -0.9
196,796 + +0.1
196,796 + +0.3
196,796 + -0.0
196,796 + -0.3
196,797 - +0.1
196,798 + -0.8
196,799 - +1.4
196,832 + +0.4
196,833 - -0.9
196,865 + -1.2
196,866 - -0.1
196,867 + +1.1
196,868 - -0.1
196,868 - -0.3
196,868 - +0.3
196,873 - -0.0
196,910 + -0.6
196,912 + -0.0
196,912 + -0.3
196,923 - -0.0
196,949 + +0.2
196,949 + -1.3
196,953 - +0.5
197,008 - BACOVA_04306 0.19 -1.2
197,043 + BACOVA_04306 0.24 -0.0
197,043 + BACOVA_04306 0.24 -0.8
197,065 + BACOVA_04306 0.28 -1.8
197,066 - BACOVA_04306 0.28 -1.9
197,066 - BACOVA_04306 0.28 +0.2
197,066 - BACOVA_04306 0.28 +0.0
197,107 + BACOVA_04306 0.34 -2.0
197,118 - BACOVA_04306 0.36 -0.1
197,124 + BACOVA_04306 0.37 -0.3
197,129 + BACOVA_04306 0.38 +0.4
197,129 + BACOVA_04306 0.38 +0.4
197,198 + BACOVA_04306 0.48 -0.6
197,304 + BACOVA_04306 0.65 -0.7
197,305 - BACOVA_04306 0.65 -0.6
197,306 + BACOVA_04306 0.65 -1.4
197,306 + BACOVA_04306 0.65 +0.1
197,306 + BACOVA_04306 0.65 -1.3
197,306 + BACOVA_04306 0.65 +0.6
197,307 - BACOVA_04306 0.66 +0.2
197,307 - BACOVA_04306 0.66 -0.4
197,307 - BACOVA_04306 0.66 +0.3
197,307 - BACOVA_04306 0.66 -1.4
197,329 + BACOVA_04306 0.69 -0.2
197,330 - BACOVA_04306 0.69 -0.4
197,348 - BACOVA_04306 0.72 +0.1
197,348 - BACOVA_04306 0.72 -0.7
197,363 - BACOVA_04306 0.74 -1.2
197,459 + BACOVA_04306 0.89 +0.2
197,478 - -0.3
197,491 + +0.7
197,491 + -0.4
197,491 + -0.6
197,543 - +0.5
197,555 + -0.9
197,559 + +1.1
197,559 + +0.4
197,560 - +0.6
197,560 - -0.3
197,650 - BACOVA_04307 0.19 -0.3
197,669 - BACOVA_04307 0.23 +0.5
197,669 - BACOVA_04307 0.23 +0.8
197,684 - BACOVA_04307 0.26 -0.5
197,688 - BACOVA_04307 0.27 +0.6
197,717 + BACOVA_04307 0.33 +0.4
197,722 + BACOVA_04307 0.34 -0.1
197,727 + BACOVA_04307 0.35 -0.4
197,778 - BACOVA_04307 0.46 +1.0
197,810 - BACOVA_04307 0.53 -1.4
197,830 - BACOVA_04307 0.57 -0.8
197,833 + BACOVA_04307 0.58 +2.0
197,859 + BACOVA_04307 0.64 -0.9
197,899 + BACOVA_04307 0.72 +0.4
197,926 - BACOVA_04307 0.78 -0.6
197,958 - BACOVA_04307 0.85 -0.3
197,987 - +0.7
198,032 + +0.2
198,033 - +0.2
198,033 - -0.1
198,042 - +0.8
198,046 + -0.6
198,155 + BACOVA_04308 0.27 -1.2
198,178 + BACOVA_04308 0.43 +0.7
198,179 - BACOVA_04308 0.44 -0.2
198,183 + BACOVA_04308 0.47 +0.3
198,206 - BACOVA_04308 0.64 -1.4
198,212 + BACOVA_04308 0.68 -0.2
198,272 - +0.1
198,375 + +1.0
198,401 + -2.0
198,404 + -0.0
198,418 + +0.5
198,437 + +1.0
198,438 - +0.1
198,438 - -0.4
198,476 + +1.5
198,516 + +0.8
198,517 - +0.9
198,565 + +1.7
198,569 + +1.0
198,569 + +1.0
198,570 - -0.3
198,570 - +0.2
198,669 + BACOVA_04309 0.14 +0.5
198,670 - BACOVA_04309 0.14 -0.4
198,671 + BACOVA_04309 0.14 -1.4
198,671 + BACOVA_04309 0.14 +1.0
198,745 - BACOVA_04309 0.25 -0.3
198,766 - BACOVA_04309 0.29 +0.4
198,811 - BACOVA_04309 0.35 +0.1
198,822 + BACOVA_04309 0.37 +0.6
198,888 + BACOVA_04309 0.47 +0.6
198,892 - BACOVA_04309 0.48 -1.0
198,908 + BACOVA_04309 0.50 -0.6
198,909 - BACOVA_04309 0.50 +0.3
198,910 + BACOVA_04309 0.50 +1.6
198,910 + BACOVA_04309 0.50 -0.4
198,911 - BACOVA_04309 0.51 -0.2
198,911 - BACOVA_04309 0.51 +0.4
198,939 + BACOVA_04309 0.55 -0.9
198,940 - BACOVA_04309 0.55 +0.3
198,960 + BACOVA_04309 0.58 -0.0
198,960 + BACOVA_04309 0.58 -0.2
198,961 - BACOVA_04309 0.58 -0.0
198,961 - BACOVA_04309 0.58 +0.6
198,969 + BACOVA_04309 0.59 -0.6
199,003 - BACOVA_04309 0.65 -0.2
199,003 - BACOVA_04309 0.65 -0.4
199,021 - BACOVA_04309 0.67 -0.9
199,027 + BACOVA_04309 0.68 -0.2

Or see this region's nucleotide sequence