Experiment: D-Raffinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03750 and BACOVA_03751 are separated by 55 nucleotides BACOVA_03751 and BACOVA_03752 are separated by 8 nucleotides
BACOVA_03750: BACOVA_03750 - phosphate-selective porin O and P, at 80,242 to 81,612
_03750
BACOVA_03751: BACOVA_03751 - hypothetical protein, at 81,668 to 81,775
_03751
BACOVA_03752: BACOVA_03752 - carbamoyl-phosphate synthase, large subunit, at 81,784 to 85,011
_03752
Position (kb)
81
82 Strain fitness (log2 ratio)
-2
-1
0
1 at 80.669 kb on + strand, within BACOVA_03750 at 80.670 kb on - strand, within BACOVA_03750 at 80.670 kb on - strand, within BACOVA_03750 at 80.674 kb on - strand, within BACOVA_03750 at 80.691 kb on + strand, within BACOVA_03750 at 80.691 kb on + strand, within BACOVA_03750 at 80.698 kb on - strand, within BACOVA_03750 at 80.699 kb on + strand, within BACOVA_03750 at 80.709 kb on - strand, within BACOVA_03750 at 80.751 kb on + strand, within BACOVA_03750 at 80.751 kb on + strand, within BACOVA_03750 at 80.754 kb on + strand, within BACOVA_03750 at 80.756 kb on + strand, within BACOVA_03750 at 80.880 kb on + strand, within BACOVA_03750 at 80.881 kb on - strand, within BACOVA_03750 at 80.885 kb on + strand, within BACOVA_03750 at 80.918 kb on + strand, within BACOVA_03750 at 80.923 kb on - strand, within BACOVA_03750 at 80.935 kb on + strand, within BACOVA_03750 at 80.989 kb on - strand, within BACOVA_03750 at 81.200 kb on + strand, within BACOVA_03750 at 81.209 kb on + strand, within BACOVA_03750 at 81.209 kb on + strand, within BACOVA_03750 at 81.213 kb on + strand, within BACOVA_03750 at 81.214 kb on - strand, within BACOVA_03750 at 81.220 kb on + strand, within BACOVA_03750 at 81.313 kb on - strand, within BACOVA_03750 at 81.425 kb on + strand, within BACOVA_03750 at 81.446 kb on - strand, within BACOVA_03750 at 81.516 kb on + strand at 81.516 kb on + strand at 81.517 kb on - strand at 81.559 kb on + strand at 81.559 kb on + strand at 81.660 kb on - strand at 81.678 kb on + strand at 81.682 kb on - strand, within BACOVA_03751 at 81.689 kb on + strand, within BACOVA_03751 at 81.729 kb on + strand, within BACOVA_03751 at 81.785 kb on + strand at 81.792 kb on - strand at 81.811 kb on - strand at 81.814 kb on + strand at 81.814 kb on + strand at 81.814 kb on + strand at 81.814 kb on + strand at 81.815 kb on - strand at 81.815 kb on - strand at 81.815 kb on - strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.817 kb on - strand at 81.835 kb on - strand at 81.876 kb on + strand at 81.888 kb on + strand at 81.888 kb on + strand at 81.888 kb on + strand at 81.927 kb on + strand at 81.928 kb on - strand at 81.931 kb on + strand at 81.932 kb on - strand at 81.968 kb on - strand at 82.035 kb on - strand at 82.080 kb on + strand at 82.179 kb on + strand, within BACOVA_03752 at 82.194 kb on + strand, within BACOVA_03752 at 82.239 kb on + strand, within BACOVA_03752 at 82.279 kb on - strand, within BACOVA_03752 at 82.349 kb on + strand, within BACOVA_03752 at 82.480 kb on - strand, within BACOVA_03752 at 82.498 kb on - strand, within BACOVA_03752 at 82.554 kb on + strand, within BACOVA_03752 at 82.572 kb on + strand, within BACOVA_03752 at 82.597 kb on + strand, within BACOVA_03752 at 82.645 kb on + strand, within BACOVA_03752 at 82.673 kb on - strand, within BACOVA_03752 at 82.673 kb on - strand, within BACOVA_03752 at 82.674 kb on + strand, within BACOVA_03752 at 82.674 kb on + strand, within BACOVA_03752 at 82.675 kb on - strand, within BACOVA_03752 at 82.675 kb on - strand, within BACOVA_03752 at 82.679 kb on + strand, within BACOVA_03752 at 82.754 kb on - strand, within BACOVA_03752 at 82.774 kb on + strand, within BACOVA_03752
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose 10 mM (C) remove 80,669 + BACOVA_03750 0.31 +0.6 80,670 - BACOVA_03750 0.31 +1.0 80,670 - BACOVA_03750 0.31 +0.8 80,674 - BACOVA_03750 0.32 +0.4 80,691 + BACOVA_03750 0.33 +0.7 80,691 + BACOVA_03750 0.33 +0.5 80,698 - BACOVA_03750 0.33 +0.5 80,699 + BACOVA_03750 0.33 +0.0 80,709 - BACOVA_03750 0.34 -0.6 80,751 + BACOVA_03750 0.37 -0.6 80,751 + BACOVA_03750 0.37 +0.6 80,754 + BACOVA_03750 0.37 +0.6 80,756 + BACOVA_03750 0.37 +0.4 80,880 + BACOVA_03750 0.47 -1.3 80,881 - BACOVA_03750 0.47 +0.2 80,885 + BACOVA_03750 0.47 +1.2 80,918 + BACOVA_03750 0.49 +0.7 80,923 - BACOVA_03750 0.50 -0.1 80,935 + BACOVA_03750 0.51 +0.5 80,989 - BACOVA_03750 0.54 -0.7 81,200 + BACOVA_03750 0.70 -0.3 81,209 + BACOVA_03750 0.71 +0.2 81,209 + BACOVA_03750 0.71 +0.5 81,213 + BACOVA_03750 0.71 +0.5 81,214 - BACOVA_03750 0.71 +0.5 81,220 + BACOVA_03750 0.71 -0.5 81,313 - BACOVA_03750 0.78 +0.7 81,425 + BACOVA_03750 0.86 -0.5 81,446 - BACOVA_03750 0.88 -0.6 81,516 + +1.3 81,516 + -0.3 81,517 - -0.6 81,559 + +0.0 81,559 + +0.5 81,660 - -0.4 81,678 + -0.1 81,682 - BACOVA_03751 0.13 -0.9 81,689 + BACOVA_03751 0.19 -0.4 81,729 + BACOVA_03751 0.56 -1.8 81,785 + -1.2 81,792 - +0.3 81,811 - +0.2 81,814 + -1.7 81,814 + -1.2 81,814 + -0.5 81,814 + -2.6 81,815 - +0.2 81,815 - -0.2 81,815 - -1.1 81,816 + -0.1 81,816 + -0.1 81,817 - -0.9 81,835 - +0.3 81,876 + -0.0 81,888 + -0.4 81,888 + -0.0 81,888 + +0.8 81,927 + -1.1 81,928 - +0.5 81,931 + +0.0 81,932 - +0.4 81,968 - -1.2 82,035 - -0.0 82,080 + -0.3 82,179 + BACOVA_03752 0.12 -0.9 82,194 + BACOVA_03752 0.13 -0.2 82,239 + BACOVA_03752 0.14 +0.5 82,279 - BACOVA_03752 0.15 +0.1 82,349 + BACOVA_03752 0.18 +0.5 82,480 - BACOVA_03752 0.22 -0.7 82,498 - BACOVA_03752 0.22 -0.3 82,554 + BACOVA_03752 0.24 -0.1 82,572 + BACOVA_03752 0.24 -1.4 82,597 + BACOVA_03752 0.25 -1.4 82,645 + BACOVA_03752 0.27 -0.7 82,673 - BACOVA_03752 0.28 -0.6 82,673 - BACOVA_03752 0.28 -0.7 82,674 + BACOVA_03752 0.28 +0.8 82,674 + BACOVA_03752 0.28 +0.8 82,675 - BACOVA_03752 0.28 -2.1 82,675 - BACOVA_03752 0.28 -0.4 82,679 + BACOVA_03752 0.28 -1.5 82,754 - BACOVA_03752 0.30 -1.7 82,774 + BACOVA_03752 0.31 -0.8
Or see this region's nucleotide sequence