Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01227

Experiment: D-Raffinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01225 and BACOVA_01226 are separated by 19 nucleotidesBACOVA_01226 and BACOVA_01227 are separated by 25 nucleotidesBACOVA_01227 and BACOVA_01228 are separated by 12 nucleotides BACOVA_01225: BACOVA_01225 - hypothetical protein, at 4,126 to 5,688 _01225 BACOVA_01226: BACOVA_01226 - hypothetical protein, at 5,708 to 6,598 _01226 BACOVA_01227: BACOVA_01227 - SusD family protein, at 6,624 to 8,144 _01227 BACOVA_01228: BACOVA_01228 - TonB-linked outer membrane protein, SusC/RagA family, at 8,157 to 11,090 _01228 Position (kb) 6 7 8 9Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5.674 kb on + strandat 5.674 kb on + strandat 5.692 kb on + strandat 5.704 kb on + strandat 5.704 kb on + strandat 5.709 kb on + strandat 5.709 kb on + strandat 5.775 kb on + strandat 5.776 kb on - strandat 5.776 kb on - strandat 5.779 kb on + strandat 5.779 kb on + strandat 5.805 kb on + strand, within BACOVA_01226at 5.809 kb on + strand, within BACOVA_01226at 5.809 kb on + strand, within BACOVA_01226at 5.810 kb on - strand, within BACOVA_01226at 5.810 kb on - strand, within BACOVA_01226at 5.810 kb on - strand, within BACOVA_01226at 5.815 kb on + strand, within BACOVA_01226at 5.817 kb on + strand, within BACOVA_01226at 5.819 kb on + strand, within BACOVA_01226at 5.820 kb on - strand, within BACOVA_01226at 5.840 kb on + strand, within BACOVA_01226at 5.840 kb on + strand, within BACOVA_01226at 5.841 kb on - strand, within BACOVA_01226at 5.845 kb on + strand, within BACOVA_01226at 5.846 kb on - strand, within BACOVA_01226at 5.846 kb on - strand, within BACOVA_01226at 5.847 kb on + strand, within BACOVA_01226at 5.851 kb on - strand, within BACOVA_01226at 5.875 kb on + strand, within BACOVA_01226at 5.875 kb on + strand, within BACOVA_01226at 5.876 kb on - strand, within BACOVA_01226at 5.876 kb on - strand, within BACOVA_01226at 5.926 kb on + strand, within BACOVA_01226at 5.927 kb on - strand, within BACOVA_01226at 5.927 kb on - strand, within BACOVA_01226at 5.930 kb on + strand, within BACOVA_01226at 5.932 kb on + strand, within BACOVA_01226at 5.987 kb on - strand, within BACOVA_01226at 6.023 kb on + strand, within BACOVA_01226at 6.023 kb on + strand, within BACOVA_01226at 6.024 kb on - strand, within BACOVA_01226at 6.035 kb on - strand, within BACOVA_01226at 6.093 kb on + strand, within BACOVA_01226at 6.126 kb on + strand, within BACOVA_01226at 6.127 kb on - strand, within BACOVA_01226at 6.127 kb on - strand, within BACOVA_01226at 6.140 kb on - strand, within BACOVA_01226at 6.142 kb on + strand, within BACOVA_01226at 6.193 kb on - strand, within BACOVA_01226at 6.203 kb on + strand, within BACOVA_01226at 6.270 kb on + strand, within BACOVA_01226at 6.342 kb on + strand, within BACOVA_01226at 6.342 kb on + strand, within BACOVA_01226at 6.364 kb on + strand, within BACOVA_01226at 6.364 kb on + strand, within BACOVA_01226at 6.406 kb on - strand, within BACOVA_01226at 6.415 kb on + strand, within BACOVA_01226at 6.415 kb on + strand, within BACOVA_01226at 6.415 kb on + strand, within BACOVA_01226at 6.426 kb on - strand, within BACOVA_01226at 6.469 kb on - strand, within BACOVA_01226at 6.472 kb on + strand, within BACOVA_01226at 6.472 kb on + strand, within BACOVA_01226at 6.476 kb on + strand, within BACOVA_01226at 6.535 kb on + strandat 6.535 kb on + strandat 6.536 kb on - strandat 6.573 kb on - strandat 6.573 kb on - strandat 6.609 kb on + strandat 6.609 kb on + strandat 6.620 kb on + strandat 6.620 kb on + strandat 6.626 kb on - strandat 6.728 kb on + strandat 6.728 kb on + strandat 6.761 kb on + strandat 6.830 kb on + strand, within BACOVA_01227at 6.852 kb on - strand, within BACOVA_01227at 6.879 kb on - strand, within BACOVA_01227at 6.946 kb on + strand, within BACOVA_01227at 6.946 kb on + strand, within BACOVA_01227at 6.946 kb on + strand, within BACOVA_01227at 6.947 kb on - strand, within BACOVA_01227at 6.947 kb on - strand, within BACOVA_01227at 6.988 kb on + strand, within BACOVA_01227at 7.045 kb on - strand, within BACOVA_01227at 7.046 kb on + strand, within BACOVA_01227at 7.046 kb on + strand, within BACOVA_01227at 7.064 kb on + strand, within BACOVA_01227at 7.065 kb on - strand, within BACOVA_01227at 7.135 kb on + strand, within BACOVA_01227at 7.156 kb on + strand, within BACOVA_01227at 7.157 kb on - strand, within BACOVA_01227at 7.157 kb on - strand, within BACOVA_01227at 7.157 kb on - strand, within BACOVA_01227at 7.157 kb on - strand, within BACOVA_01227at 7.183 kb on - strand, within BACOVA_01227at 7.187 kb on - strand, within BACOVA_01227at 7.197 kb on - strand, within BACOVA_01227at 7.205 kb on + strand, within BACOVA_01227at 7.205 kb on + strand, within BACOVA_01227at 7.206 kb on - strand, within BACOVA_01227at 7.207 kb on + strand, within BACOVA_01227at 7.208 kb on - strand, within BACOVA_01227at 7.214 kb on - strand, within BACOVA_01227at 7.224 kb on + strand, within BACOVA_01227at 7.224 kb on + strand, within BACOVA_01227at 7.247 kb on - strand, within BACOVA_01227at 7.267 kb on - strand, within BACOVA_01227at 7.293 kb on - strand, within BACOVA_01227at 7.293 kb on - strand, within BACOVA_01227at 7.298 kb on - strand, within BACOVA_01227at 7.307 kb on + strand, within BACOVA_01227at 7.307 kb on + strand, within BACOVA_01227at 7.310 kb on - strand, within BACOVA_01227at 7.324 kb on + strand, within BACOVA_01227at 7.337 kb on - strand, within BACOVA_01227at 7.350 kb on - strand, within BACOVA_01227at 7.359 kb on + strand, within BACOVA_01227at 7.360 kb on - strand, within BACOVA_01227at 7.367 kb on - strand, within BACOVA_01227at 7.374 kb on - strand, within BACOVA_01227at 7.374 kb on - strand, within BACOVA_01227at 7.381 kb on - strand, within BACOVA_01227at 7.388 kb on + strand, within BACOVA_01227at 7.396 kb on + strand, within BACOVA_01227at 7.424 kb on + strand, within BACOVA_01227at 7.426 kb on + strand, within BACOVA_01227at 7.432 kb on + strand, within BACOVA_01227at 7.436 kb on + strand, within BACOVA_01227at 7.437 kb on - strand, within BACOVA_01227at 7.445 kb on - strand, within BACOVA_01227at 7.445 kb on - strand, within BACOVA_01227at 7.474 kb on - strand, within BACOVA_01227at 7.486 kb on + strand, within BACOVA_01227at 7.499 kb on + strand, within BACOVA_01227at 7.522 kb on + strand, within BACOVA_01227at 7.572 kb on + strand, within BACOVA_01227at 7.607 kb on - strand, within BACOVA_01227at 7.826 kb on - strand, within BACOVA_01227at 7.837 kb on + strand, within BACOVA_01227at 7.838 kb on - strand, within BACOVA_01227at 7.866 kb on + strand, within BACOVA_01227at 7.884 kb on + strand, within BACOVA_01227at 7.894 kb on + strand, within BACOVA_01227at 7.904 kb on + strand, within BACOVA_01227at 7.971 kb on + strand, within BACOVA_01227at 7.971 kb on + strand, within BACOVA_01227at 7.972 kb on - strand, within BACOVA_01227at 7.972 kb on - strand, within BACOVA_01227at 7.997 kb on - strandat 8.039 kb on + strandat 8.039 kb on + strandat 8.118 kb on + strandat 8.118 kb on + strandat 8.118 kb on + strandat 8.123 kb on - strandat 8.153 kb on + strandat 8.215 kb on + strandat 8.215 kb on + strandat 8.215 kb on + strandat 8.288 kb on - strandat 8.301 kb on - strandat 8.432 kb on + strandat 8.432 kb on + strandat 8.433 kb on - strandat 8.468 kb on - strand, within BACOVA_01228at 8.492 kb on - strand, within BACOVA_01228at 8.603 kb on + strand, within BACOVA_01228at 8.604 kb on - strand, within BACOVA_01228at 8.604 kb on - strand, within BACOVA_01228at 8.606 kb on + strand, within BACOVA_01228at 8.671 kb on + strand, within BACOVA_01228at 8.672 kb on - strand, within BACOVA_01228at 8.682 kb on - strand, within BACOVA_01228at 8.706 kb on + strand, within BACOVA_01228at 8.790 kb on - strand, within BACOVA_01228at 8.805 kb on + strand, within BACOVA_01228at 8.805 kb on + strand, within BACOVA_01228at 8.854 kb on + strand, within BACOVA_01228at 8.859 kb on + strand, within BACOVA_01228at 8.859 kb on + strand, within BACOVA_01228at 8.978 kb on + strand, within BACOVA_01228at 8.984 kb on + strand, within BACOVA_01228at 8.984 kb on + strand, within BACOVA_01228at 9.011 kb on + strand, within BACOVA_01228at 9.011 kb on + strand, within BACOVA_01228at 9.012 kb on - strand, within BACOVA_01228at 9.026 kb on + strand, within BACOVA_01228at 9.029 kb on + strand, within BACOVA_01228at 9.032 kb on - strand, within BACOVA_01228at 9.053 kb on + strand, within BACOVA_01228at 9.062 kb on + strand, within BACOVA_01228at 9.063 kb on - strand, within BACOVA_01228at 9.086 kb on + strand, within BACOVA_01228at 9.090 kb on - strand, within BACOVA_01228at 9.098 kb on + strand, within BACOVA_01228at 9.098 kb on + strand, within BACOVA_01228at 9.098 kb on + strand, within BACOVA_01228at 9.099 kb on - strand, within BACOVA_01228at 9.143 kb on + strand, within BACOVA_01228

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose 10 mM (C)
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5,674 + -0.1
5,674 + -0.4
5,692 + -0.3
5,704 + +0.1
5,704 + +0.2
5,709 + -0.8
5,709 + +0.5
5,775 + +0.4
5,776 - +0.7
5,776 - -0.3
5,779 + -0.3
5,779 + -0.9
5,805 + BACOVA_01226 0.11 +0.2
5,809 + BACOVA_01226 0.11 +0.8
5,809 + BACOVA_01226 0.11 +0.4
5,810 - BACOVA_01226 0.11 +2.0
5,810 - BACOVA_01226 0.11 +0.1
5,810 - BACOVA_01226 0.11 -0.1
5,815 + BACOVA_01226 0.12 -0.1
5,817 + BACOVA_01226 0.12 -0.3
5,819 + BACOVA_01226 0.12 +0.6
5,820 - BACOVA_01226 0.13 -1.4
5,840 + BACOVA_01226 0.15 -0.9
5,840 + BACOVA_01226 0.15 +0.0
5,841 - BACOVA_01226 0.15 -3.3
5,845 + BACOVA_01226 0.15 +0.7
5,846 - BACOVA_01226 0.15 +0.6
5,846 - BACOVA_01226 0.15 +1.2
5,847 + BACOVA_01226 0.16 -1.3
5,851 - BACOVA_01226 0.16 +1.4
5,875 + BACOVA_01226 0.19 -0.8
5,875 + BACOVA_01226 0.19 +2.0
5,876 - BACOVA_01226 0.19 +2.0
5,876 - BACOVA_01226 0.19 +1.3
5,926 + BACOVA_01226 0.24 +0.7
5,927 - BACOVA_01226 0.25 -0.6
5,927 - BACOVA_01226 0.25 +0.9
5,930 + BACOVA_01226 0.25 +1.4
5,932 + BACOVA_01226 0.25 -0.6
5,987 - BACOVA_01226 0.31 +1.8
6,023 + BACOVA_01226 0.35 +0.8
6,023 + BACOVA_01226 0.35 -1.4
6,024 - BACOVA_01226 0.35 -0.5
6,035 - BACOVA_01226 0.37 -0.2
6,093 + BACOVA_01226 0.43 +0.8
6,126 + BACOVA_01226 0.47 +1.0
6,127 - BACOVA_01226 0.47 +1.0
6,127 - BACOVA_01226 0.47 +0.6
6,140 - BACOVA_01226 0.48 +0.8
6,142 + BACOVA_01226 0.49 -0.9
6,193 - BACOVA_01226 0.54 -0.1
6,203 + BACOVA_01226 0.56 +0.2
6,270 + BACOVA_01226 0.63 -0.8
6,342 + BACOVA_01226 0.71 +0.3
6,342 + BACOVA_01226 0.71 -0.3
6,364 + BACOVA_01226 0.74 +0.7
6,364 + BACOVA_01226 0.74 -0.4
6,406 - BACOVA_01226 0.78 -0.9
6,415 + BACOVA_01226 0.79 -0.6
6,415 + BACOVA_01226 0.79 +0.9
6,415 + BACOVA_01226 0.79 +0.5
6,426 - BACOVA_01226 0.81 +1.2
6,469 - BACOVA_01226 0.85 +0.3
6,472 + BACOVA_01226 0.86 +0.3
6,472 + BACOVA_01226 0.86 -0.3
6,476 + BACOVA_01226 0.86 +0.6
6,535 + -0.4
6,535 + -1.4
6,536 - -0.4
6,573 - -0.2
6,573 - +0.3
6,609 + -0.3
6,609 + +0.0
6,620 + +0.3
6,620 + -0.6
6,626 - +0.9
6,728 + +0.2
6,728 + +0.6
6,761 + +1.1
6,830 + BACOVA_01227 0.14 -0.0
6,852 - BACOVA_01227 0.15 +0.5
6,879 - BACOVA_01227 0.17 -0.6
6,946 + BACOVA_01227 0.21 -0.3
6,946 + BACOVA_01227 0.21 +0.4
6,946 + BACOVA_01227 0.21 -1.8
6,947 - BACOVA_01227 0.21 +0.6
6,947 - BACOVA_01227 0.21 +1.4
6,988 + BACOVA_01227 0.24 +0.7
7,045 - BACOVA_01227 0.28 -0.8
7,046 + BACOVA_01227 0.28 +1.0
7,046 + BACOVA_01227 0.28 +1.2
7,064 + BACOVA_01227 0.29 -1.0
7,065 - BACOVA_01227 0.29 -0.4
7,135 + BACOVA_01227 0.34 -0.2
7,156 + BACOVA_01227 0.35 -0.1
7,157 - BACOVA_01227 0.35 +1.3
7,157 - BACOVA_01227 0.35 +1.9
7,157 - BACOVA_01227 0.35 +0.0
7,157 - BACOVA_01227 0.35 +0.7
7,183 - BACOVA_01227 0.37 +0.5
7,187 - BACOVA_01227 0.37 -1.0
7,197 - BACOVA_01227 0.38 -1.3
7,205 + BACOVA_01227 0.38 +0.6
7,205 + BACOVA_01227 0.38 -1.1
7,206 - BACOVA_01227 0.38 -0.2
7,207 + BACOVA_01227 0.38 +0.2
7,208 - BACOVA_01227 0.38 +0.7
7,214 - BACOVA_01227 0.39 +1.5
7,224 + BACOVA_01227 0.39 +1.6
7,224 + BACOVA_01227 0.39 +0.3
7,247 - BACOVA_01227 0.41 -1.1
7,267 - BACOVA_01227 0.42 -1.4
7,293 - BACOVA_01227 0.44 +0.4
7,293 - BACOVA_01227 0.44 -0.8
7,298 - BACOVA_01227 0.44 -1.6
7,307 + BACOVA_01227 0.45 +0.4
7,307 + BACOVA_01227 0.45 +0.5
7,310 - BACOVA_01227 0.45 -0.3
7,324 + BACOVA_01227 0.46 +0.3
7,337 - BACOVA_01227 0.47 +2.6
7,350 - BACOVA_01227 0.48 -0.3
7,359 + BACOVA_01227 0.48 -2.1
7,360 - BACOVA_01227 0.48 -0.2
7,367 - BACOVA_01227 0.49 +1.1
7,374 - BACOVA_01227 0.49 -0.1
7,374 - BACOVA_01227 0.49 -0.2
7,381 - BACOVA_01227 0.50 -0.6
7,388 + BACOVA_01227 0.50 -0.1
7,396 + BACOVA_01227 0.51 -1.3
7,424 + BACOVA_01227 0.53 -0.6
7,426 + BACOVA_01227 0.53 -0.0
7,432 + BACOVA_01227 0.53 +0.9
7,436 + BACOVA_01227 0.53 +0.1
7,437 - BACOVA_01227 0.53 +0.0
7,445 - BACOVA_01227 0.54 -0.5
7,445 - BACOVA_01227 0.54 -0.7
7,474 - BACOVA_01227 0.56 +1.8
7,486 + BACOVA_01227 0.57 +1.0
7,499 + BACOVA_01227 0.58 -0.4
7,522 + BACOVA_01227 0.59 +0.7
7,572 + BACOVA_01227 0.62 +1.0
7,607 - BACOVA_01227 0.65 +0.2
7,826 - BACOVA_01227 0.79 -0.4
7,837 + BACOVA_01227 0.80 -0.5
7,838 - BACOVA_01227 0.80 -1.3
7,866 + BACOVA_01227 0.82 -0.0
7,884 + BACOVA_01227 0.83 +0.0
7,894 + BACOVA_01227 0.83 -0.9
7,904 + BACOVA_01227 0.84 -1.1
7,971 + BACOVA_01227 0.89 +0.1
7,971 + BACOVA_01227 0.89 -0.3
7,972 - BACOVA_01227 0.89 -0.1
7,972 - BACOVA_01227 0.89 -0.9
7,997 - -1.0
8,039 + -0.1
8,039 + -1.3
8,118 + +0.3
8,118 + -0.7
8,118 + -1.2
8,123 - -0.6
8,153 + -0.0
8,215 + +1.7
8,215 + +0.4
8,215 + -0.6
8,288 - +0.4
8,301 - +0.4
8,432 + +0.0
8,432 + +0.0
8,433 - -0.2
8,468 - BACOVA_01228 0.11 -0.2
8,492 - BACOVA_01228 0.11 +0.1
8,603 + BACOVA_01228 0.15 -0.2
8,604 - BACOVA_01228 0.15 +0.5
8,604 - BACOVA_01228 0.15 -1.1
8,606 + BACOVA_01228 0.15 +0.3
8,671 + BACOVA_01228 0.18 +0.4
8,672 - BACOVA_01228 0.18 -0.2
8,682 - BACOVA_01228 0.18 -1.1
8,706 + BACOVA_01228 0.19 +1.4
8,790 - BACOVA_01228 0.22 +0.8
8,805 + BACOVA_01228 0.22 -1.1
8,805 + BACOVA_01228 0.22 -0.3
8,854 + BACOVA_01228 0.24 -1.4
8,859 + BACOVA_01228 0.24 -0.3
8,859 + BACOVA_01228 0.24 +0.7
8,978 + BACOVA_01228 0.28 +0.6
8,984 + BACOVA_01228 0.28 -0.6
8,984 + BACOVA_01228 0.28 +0.2
9,011 + BACOVA_01228 0.29 -0.1
9,011 + BACOVA_01228 0.29 -0.2
9,012 - BACOVA_01228 0.29 +0.7
9,026 + BACOVA_01228 0.30 +0.2
9,029 + BACOVA_01228 0.30 +0.4
9,032 - BACOVA_01228 0.30 -0.1
9,053 + BACOVA_01228 0.31 -1.1
9,062 + BACOVA_01228 0.31 -0.3
9,063 - BACOVA_01228 0.31 +0.9
9,086 + BACOVA_01228 0.32 +0.1
9,090 - BACOVA_01228 0.32 +1.2
9,098 + BACOVA_01228 0.32 -1.0
9,098 + BACOVA_01228 0.32 -0.9
9,098 + BACOVA_01228 0.32 -0.3
9,099 - BACOVA_01228 0.32 +0.5
9,143 + BACOVA_01228 0.34 +0.4

Or see this region's nucleotide sequence