Strain Fitness in Escherichia fergusonii Becca around EFB2_04859

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
5,110,123	+		EFB2_04858	0.34	+0.9
5,110,123	+		EFB2_04858	0.34	-0.2
5,110,123	+		EFB2_04858	0.34	+0.6
5,110,124	-		EFB2_04858	0.34	+0.2
5,110,124	-		EFB2_04858	0.34	-1.5
5,110,124	-		EFB2_04858	0.34	-0.1
5,110,124	-		EFB2_04858	0.34	-3.0
5,110,124	-		EFB2_04858	0.34	+0.8
5,110,131	+		EFB2_04858	0.35	+1.1
5,110,131	+		EFB2_04858	0.35	-1.3
5,110,131	+		EFB2_04858	0.35	-0.3
5,110,132	-		EFB2_04858	0.35	-1.0
5,110,132	-		EFB2_04858	0.35	+1.2
5,110,151	+		EFB2_04858	0.36	-2.2
5,110,200	+		EFB2_04858	0.40	-0.4
5,110,200	+		EFB2_04858	0.40	-0.4
5,110,200	+		EFB2_04858	0.40	-1.0
5,110,200	+		EFB2_04858	0.40	+1.1
5,110,200	+		EFB2_04858	0.40	+0.1
5,110,200	+		EFB2_04858	0.40	+0.1
5,110,200	+		EFB2_04858	0.40	-1.9
5,110,200	+		EFB2_04858	0.40	-2.6
5,110,200	+		EFB2_04858	0.40	-2.6
5,110,200	+		EFB2_04858	0.40	-0.1
5,110,200	+		EFB2_04858	0.40	+1.1
5,110,200	+		EFB2_04858	0.40	-0.8
5,110,200	+		EFB2_04858	0.40	+0.6
5,110,200	+		EFB2_04858	0.40	+0.1
5,110,200	+		EFB2_04858	0.40	+0.7
5,110,200	+		EFB2_04858	0.40	-1.7
5,110,200	+		EFB2_04858	0.40	-1.8
5,110,201	-		EFB2_04858	0.40	-1.8
5,110,201	-		EFB2_04858	0.40	+0.0
5,110,201	-		EFB2_04858	0.40	+0.6
5,110,201	-		EFB2_04858	0.40	+1.2
5,110,201	-		EFB2_04858	0.40	+0.8
5,110,201	-		EFB2_04858	0.40	-3.2
5,110,201	-		EFB2_04858	0.40	-0.5
5,110,201	-		EFB2_04858	0.40	+0.8
5,110,201	-		EFB2_04858	0.40	+1.3
5,110,201	-		EFB2_04858	0.40	-1.8
5,110,201	-		EFB2_04858	0.40	+0.1
5,110,201	-		EFB2_04858	0.40	+0.8
5,110,201	-		EFB2_04858	0.40	-0.1
5,110,201	-		EFB2_04858	0.40	-0.0
5,110,201	-		EFB2_04858	0.40	-0.3
5,110,201	-		EFB2_04858	0.40	-0.5
5,110,214	+		EFB2_04858	0.41	+1.2
5,110,214	+		EFB2_04858	0.41	-2.1
5,110,215	-		EFB2_04858	0.41	+0.7
5,110,215	-		EFB2_04858	0.41	-3.3
5,110,215	-		EFB2_04858	0.41	+1.7
5,110,215	-		EFB2_04858	0.41	+0.0
5,110,215	-		EFB2_04858	0.41	+0.6
5,110,217	+		EFB2_04858	0.42	+1.2
5,110,218	-		EFB2_04858	0.42	+1.2
5,110,218	-		EFB2_04858	0.42	-1.0
5,110,218	-		EFB2_04858	0.42	+1.2
5,110,218	-		EFB2_04858	0.42	+3.1
5,110,218	-		EFB2_04858	0.42	-0.3
5,110,244	+		EFB2_04858	0.44	+0.7
5,110,245	-		EFB2_04858	0.44	-2.7
5,110,303	+		EFB2_04858	0.48	+0.3
5,110,303	+		EFB2_04858	0.48	+0.1
5,110,303	+		EFB2_04858	0.48	+1.3
5,110,303	+		EFB2_04858	0.48	+0.6
5,110,304	-		EFB2_04858	0.48	+0.0
5,110,341	+		EFB2_04858	0.51	-0.8
5,110,341	+		EFB2_04858	0.51	-2.2
5,110,341	+		EFB2_04858	0.51	-1.7
5,110,341	+		EFB2_04858	0.51	-2.1
5,110,341	+		EFB2_04858	0.51	+1.7
5,110,341	+		EFB2_04858	0.51	-0.1
5,110,341	+		EFB2_04858	0.51	-1.3
5,110,341	+		EFB2_04858	0.51	+0.4
5,110,342	-		EFB2_04858	0.52	-2.0
5,110,342	-		EFB2_04858	0.52	-0.3
5,110,342	-		EFB2_04858	0.52	+1.6
5,110,342	-		EFB2_04858	0.52	+1.6
5,110,342	-		EFB2_04858	0.52	-3.0
5,110,342	-		EFB2_04858	0.52	-0.4
5,110,342	-		EFB2_04858	0.52	-2.6
5,110,342	-		EFB2_04858	0.52	-3.5
5,110,342	-		EFB2_04858	0.52	+2.2
5,110,342	-		EFB2_04858	0.52	-2.9
5,110,343	+		EFB2_04858	0.52	+1.4
5,110,343	+		EFB2_04858	0.52	-2.1
5,110,343	+		EFB2_04858	0.52	+0.2
5,110,343	+		EFB2_04858	0.52	+0.2
5,110,343	+		EFB2_04858	0.52	-0.0
5,110,343	+		EFB2_04858	0.52	+0.4
5,110,343	+		EFB2_04858	0.52	-1.6
5,110,343	+		EFB2_04858	0.52	-0.8
5,110,343	+		EFB2_04858	0.52	-3.1
5,110,343	+		EFB2_04858	0.52	+0.8
5,110,343	+		EFB2_04858	0.52	-0.7
5,110,343	+		EFB2_04858	0.52	+0.1
5,110,343	+		EFB2_04858	0.52	+1.5
5,110,343	+		EFB2_04858	0.52	+0.5
5,110,343	+		EFB2_04858	0.52	+0.1
5,110,344	-		EFB2_04858	0.52	-0.3
5,110,344	-		EFB2_04858	0.52	+2.9
5,110,344	-		EFB2_04858	0.52	-3.2
5,110,344	-		EFB2_04858	0.52	+0.3
5,110,344	-		EFB2_04858	0.52	+2.9
5,110,344	-		EFB2_04858	0.52	-2.7
5,110,344	-		EFB2_04858	0.52	+0.5
5,110,344	-		EFB2_04858	0.52	+0.9
5,110,379	+		EFB2_04858	0.54	-1.5
5,110,379	+		EFB2_04858	0.54	-0.2
5,110,379	+		EFB2_04858	0.54	-3.5
5,110,380	-		EFB2_04858	0.55	-0.1
5,110,380	-		EFB2_04858	0.55	-0.6
5,110,380	-		EFB2_04858	0.55	-3.3
5,110,382	+		EFB2_04858	0.55	-3.7
5,110,383	-		EFB2_04858	0.55	-1.0
5,110,383	-		EFB2_04858	0.55	+1.3
5,110,383	-		EFB2_04858	0.55	+0.6
5,110,398	+		EFB2_04858	0.56	+0.2
5,110,406	+		EFB2_04858	0.57	+0.4
5,110,406	+		EFB2_04858	0.57	+0.3
5,110,406	+		EFB2_04858	0.57	-2.1
5,110,406	+		EFB2_04858	0.57	+0.9
5,110,407	-		EFB2_04858	0.57	+0.3
5,110,407	-		EFB2_04858	0.57	-0.6
5,110,470	-		EFB2_04858	0.62	+0.3
5,110,580	+		EFB2_04858	0.70	+0.7
5,110,580	+		EFB2_04858	0.70	-0.6
5,110,580	+		EFB2_04858	0.70	+0.3
5,110,580	+		EFB2_04858	0.70	-2.4
5,110,581	-		EFB2_04858	0.70	-2.1
5,110,581	-		EFB2_04858	0.70	-1.9
5,110,595	+		EFB2_04858	0.71	-2.3
5,110,596	-		EFB2_04858	0.72	-2.9
5,110,613	+		EFB2_04858	0.73	-4.1
5,110,613	+		EFB2_04858	0.73	-1.0
5,110,626	-		EFB2_04858	0.74	+0.6
5,110,626	-		EFB2_04858	0.74	+0.1
5,110,676	+		EFB2_04858	0.78	-1.9
5,110,676	+		EFB2_04858	0.78	-0.9
5,110,676	+		EFB2_04858	0.78	-0.4
5,110,677	-		EFB2_04858	0.78	+0.9
5,110,677	-		EFB2_04858	0.78	+1.9
5,110,677	-		EFB2_04858	0.78	+2.6
5,110,677	-		EFB2_04858	0.78	+2.5
5,110,677	-		EFB2_04858	0.78	-3.2
5,110,677	-		EFB2_04858	0.78	+0.7
5,110,680	+		EFB2_04858	0.78	-2.0
5,110,680	+		EFB2_04858	0.78	+0.1
5,110,680	+		EFB2_04858	0.78	+1.1
5,110,680	+		EFB2_04858	0.78	+1.1
5,110,681	-		EFB2_04858	0.78	-1.4
5,110,687	+		EFB2_04858	0.79	+0.3
5,110,687	+		EFB2_04858	0.79	-1.9
5,110,687	+		EFB2_04858	0.79	-2.3
5,110,687	+		EFB2_04858	0.79	+1.2
5,110,688	-		EFB2_04858	0.79	-0.8
5,110,707	+		EFB2_04858	0.80	-0.3
5,110,707	+		EFB2_04858	0.80	+0.9
5,110,707	+		EFB2_04858	0.80	-0.4
5,110,707	+		EFB2_04858	0.80	+0.6
5,110,707	+		EFB2_04858	0.80	-3.1
5,110,707	+		EFB2_04858	0.80	-0.5
5,110,707	+		EFB2_04858	0.80	+0.1
5,110,707	+		EFB2_04858	0.80	-1.7
5,110,707	+		EFB2_04858	0.80	+1.0
5,110,707	+		EFB2_04858	0.80	+0.5
5,110,707	+		EFB2_04858	0.80	-1.1
5,110,707	+		EFB2_04858	0.80	+0.9
5,110,707	+		EFB2_04858	0.80	-1.0
5,110,707	+		EFB2_04858	0.80	-3.3
5,110,707	+		EFB2_04858	0.80	+0.0
5,110,707	+		EFB2_04858	0.80	-0.2
5,110,708	-		EFB2_04858	0.80	-1.2
5,110,708	-		EFB2_04858	0.80	+2.5
5,110,708	-		EFB2_04858	0.80	+0.3
5,110,708	-		EFB2_04858	0.80	-3.1
5,110,708	-		EFB2_04858	0.80	-0.5
5,110,708	-		EFB2_04858	0.80	-1.0
5,110,708	-		EFB2_04858	0.80	+2.9
5,110,708	-		EFB2_04858	0.80	+0.7
5,110,718	+		EFB2_04858	0.81	+0.2
5,110,718	+		EFB2_04858	0.81	+0.5
5,110,718	+		EFB2_04858	0.81	+1.8
5,110,719	-		EFB2_04858	0.81	+1.6
5,110,719	-		EFB2_04858	0.81	+0.3
5,110,719	-		EFB2_04858	0.81	-1.0
5,110,719	-		EFB2_04858	0.81	+1.7
5,110,727	+		EFB2_04858	0.82	-0.1
5,110,727	+		EFB2_04858	0.82	+1.0
5,110,727	+		EFB2_04858	0.82	+1.8
5,110,728	-		EFB2_04858	0.82	+0.4
5,110,728	-		EFB2_04858	0.82	+2.7
5,110,728	-		EFB2_04858	0.82	-3.0
5,110,728	-		EFB2_04858	0.82	+0.5
5,110,728	-		EFB2_04858	0.82	+0.2
5,110,728	-		EFB2_04858	0.82	-0.3
5,110,728	-		EFB2_04858	0.82	-0.8
5,110,728	-		EFB2_04858	0.82	+1.9
5,110,728	-		EFB2_04858	0.82	+0.9
5,110,757	+		EFB2_04858	0.84	-3.0
5,110,757	+		EFB2_04858	0.84	-3.1
5,110,757	+		EFB2_04858	0.84	+0.3
5,110,757	+		EFB2_04858	0.84	+3.0
5,110,757	+		EFB2_04858	0.84	-0.3
5,110,757	+		EFB2_04858	0.84	+0.9
5,110,757	+		EFB2_04858	0.84	+1.4
5,110,757	+		EFB2_04858	0.84	-0.3
5,110,757	+		EFB2_04858	0.84	-0.3
5,110,757	+		EFB2_04858	0.84	-0.5
5,110,757	+		EFB2_04858	0.84	+1.1
5,110,757	+		EFB2_04858	0.84	+0.2
5,110,757	+		EFB2_04858	0.84	+0.3
5,110,757	+		EFB2_04858	0.84	+0.1
5,110,758	-		EFB2_04858	0.84	+0.5
5,110,758	-		EFB2_04858	0.84	-0.5
5,110,758	-		EFB2_04858	0.84	-0.1
5,110,758	-		EFB2_04858	0.84	+0.9
5,110,758	-		EFB2_04858	0.84	-0.9
5,110,758	-		EFB2_04858	0.84	-2.8
5,110,758	-		EFB2_04858	0.84	+0.4
5,110,758	-		EFB2_04858	0.84	-2.1
5,110,758	-		EFB2_04858	0.84	+1.2
5,110,758	-		EFB2_04858	0.84	+1.3
5,110,758	-		EFB2_04858	0.84	+0.3
5,110,758	-		EFB2_04858	0.84	-1.3
5,110,758	-		EFB2_04858	0.84	-3.6
5,110,760	+		EFB2_04858	0.85	+2.5
5,110,760	+		EFB2_04858	0.85	+1.8
5,110,760	+		EFB2_04858	0.85	+1.9
5,110,760	+		EFB2_04858	0.85	+1.9
5,110,760	+		EFB2_04858	0.85	-0.0
5,110,761	-		EFB2_04858	0.85	-0.8
5,110,761	-		EFB2_04858	0.85	+1.1
5,110,761	-		EFB2_04858	0.85	-0.5
5,110,779	+		EFB2_04858	0.86	+0.4
5,110,779	+		EFB2_04858	0.86	+1.3
5,110,779	+		EFB2_04858	0.86	+1.0
5,110,779	+		EFB2_04858	0.86	+0.5
5,110,779	+		EFB2_04858	0.86	+2.4
5,110,779	+		EFB2_04858	0.86	+1.6
5,110,779	+		EFB2_04858	0.86	+0.7
5,110,779	+		EFB2_04858	0.86	+0.9
5,110,779	+		EFB2_04858	0.86	-0.0
5,110,779	+		EFB2_04858	0.86	+0.2
5,110,779	+		EFB2_04858	0.86	-4.5
5,110,779	+		EFB2_04858	0.86	+1.2
5,110,779	+		EFB2_04858	0.86	+0.8
5,110,779	+		EFB2_04858	0.86	+0.9
5,110,779	+		EFB2_04858	0.86	+1.2
5,110,779	+		EFB2_04858	0.86	+0.0
5,110,779	+		EFB2_04858	0.86	+1.5
5,110,779	+		EFB2_04858	0.86	+0.6
5,110,779	+		EFB2_04858	0.86	+0.2
5,110,780	-		EFB2_04858	0.86	+0.5
5,110,780	-		EFB2_04858	0.86	-1.1
5,110,780	-		EFB2_04858	0.86	-1.6
5,110,780	-		EFB2_04858	0.86	+1.6
5,110,780	-		EFB2_04858	0.86	-3.2
5,110,780	-		EFB2_04858	0.86	-1.3
5,110,780	-		EFB2_04858	0.86	+0.1
5,110,780	-		EFB2_04858	0.86	+0.1
5,110,780	-		EFB2_04858	0.86	+0.9
5,110,780	-		EFB2_04858	0.86	+0.9
5,110,780	-		EFB2_04858	0.86	+0.3
5,110,780	-		EFB2_04858	0.86	-0.3
5,110,780	-		EFB2_04858	0.86	-0.1
5,110,780	-		EFB2_04858	0.86	+0.2
5,110,780	-		EFB2_04858	0.86	+1.3
5,110,780	-		EFB2_04858	0.86	-0.3
5,110,780	-		EFB2_04858	0.86	-0.8
5,110,780	-		EFB2_04858	0.86	-0.4
5,110,780	-		EFB2_04858	0.86	+0.7
5,110,780	-		EFB2_04858	0.86	-0.8
5,110,780	-		EFB2_04858	0.86	-2.6
5,110,780	-		EFB2_04858	0.86	-1.3
5,110,780	-		EFB2_04858	0.86	-2.4
5,110,780	-		EFB2_04858	0.86	+0.2
5,110,799	+		EFB2_04858	0.88	+2.0
5,110,799	+		EFB2_04858	0.88	-2.6
5,110,799	+		EFB2_04858	0.88	-0.3
5,110,799	+		EFB2_04858	0.88	-1.5
5,110,799	+		EFB2_04858	0.88	-1.5
5,110,799	+		EFB2_04858	0.88	-1.1
5,110,800	+		EFB2_04858	0.88	+0.2
5,110,800	-		EFB2_04858	0.88	-0.1
5,110,800	-		EFB2_04858	0.88	+0.6
5,110,800	-		EFB2_04858	0.88	-0.0
5,110,800	-		EFB2_04858	0.88	+2.3
5,110,809	+		EFB2_04858	0.88	-0.8
5,110,809	+		EFB2_04858	0.88	+1.0
5,110,809	+		EFB2_04858	0.88	+1.4
5,110,809	+		EFB2_04858	0.88	+1.2
5,110,809	+		EFB2_04858	0.88	-1.8
5,110,809	+		EFB2_04858	0.88	+0.5
5,110,809	+		EFB2_04858	0.88	-1.0
5,110,809	+		EFB2_04858	0.88	-1.2
5,110,809	+		EFB2_04858	0.88	+0.2
5,110,809	+		EFB2_04858	0.88	+2.0
5,110,809	+		EFB2_04858	0.88	+3.5
5,110,809	+		EFB2_04858	0.88	-0.7
5,110,809	+		EFB2_04858	0.88	-3.3
5,110,809	+		EFB2_04858	0.88	-0.6
5,110,809	+		EFB2_04858	0.88	+0.2
5,110,809	+		EFB2_04858	0.88	+0.2
5,110,809	+		EFB2_04858	0.88	+0.4
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5,112,580	+				+1.3
5,112,580	+				+1.2
5,112,580	+				+1.2
5,112,580	+				+0.4
5,112,580	+				+1.4
5,112,580	+				+0.8
5,112,580	+				-0.0
5,112,580	+				+0.5
5,112,581	-				+0.4
5,112,581	-				+0.4
5,112,581	-				-0.5
5,112,581	-				-0.1
5,112,581	-				-2.5
5,112,581	-				+1.6
5,112,581	-				+1.3
5,112,581	-				-1.6
5,112,581	-				+1.0
5,112,581	-				-1.2
5,112,581	-				-0.8
5,112,581	-				-1.9
5,112,581	-				-0.1
5,112,623	+				-2.3
5,112,623	+				+1.0
5,112,623	+				-2.4
5,112,623	+				-0.6
5,112,623	+				+0.6
5,112,624	-				-0.3
5,112,624	-				+1.0
5,112,624	-				+1.0
5,112,624	-				+0.9
5,112,624	-				+1.2
5,112,624	-				+0.5