Strain Fitness in Escherichia fergusonii Becca around EFB2_04645

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
4,883,229	+		EFB2_04644	0.67	-0.7
4,883,229	+		EFB2_04644	0.67	+0.3
4,883,229	+		EFB2_04644	0.67	+0.9
4,883,231	+		EFB2_04644	0.67	+2.1
4,883,231	+		EFB2_04644	0.67	+1.7
4,883,231	+		EFB2_04644	0.67	+1.1
4,883,231	+		EFB2_04644	0.67	-0.5
4,883,231	+		EFB2_04644	0.67	+0.9
4,883,231	+		EFB2_04644	0.67	+0.3
4,883,231	+		EFB2_04644	0.67	+1.5
4,883,231	+		EFB2_04644	0.67	-0.5
4,883,232	-		EFB2_04644	0.67	+0.5
4,883,232	-		EFB2_04644	0.67	-3.1
4,883,232	-		EFB2_04644	0.67	+1.2
4,883,232	-		EFB2_04644	0.67	-0.8
4,883,232	-		EFB2_04644	0.67	+1.0
4,883,273	+		EFB2_04644	0.69	+0.1
4,883,298	+		EFB2_04644	0.70	+0.6
4,883,298	+		EFB2_04644	0.70	-3.5
4,883,298	+		EFB2_04644	0.70	+0.9
4,883,298	+		EFB2_04644	0.70	-2.0
4,883,299	-		EFB2_04644	0.70	-1.5
4,883,299	-		EFB2_04644	0.70	+2.1
4,883,299	-		EFB2_04644	0.70	+0.2
4,883,318	+		EFB2_04644	0.71	-0.6
4,883,319	-		EFB2_04644	0.71	-3.2
4,883,319	-		EFB2_04644	0.71	+0.4
4,883,319	-		EFB2_04644	0.71	+1.0
4,883,330	+		EFB2_04644	0.72	+0.6
4,883,330	+		EFB2_04644	0.72	-0.1
4,883,330	+		EFB2_04644	0.72	-3.2
4,883,330	+		EFB2_04644	0.72	+0.3
4,883,330	+		EFB2_04644	0.72	+1.3
4,883,330	+		EFB2_04644	0.72	+2.0
4,883,330	+		EFB2_04644	0.72	+1.3
4,883,330	+		EFB2_04644	0.72	-2.7
4,883,330	+		EFB2_04644	0.72	-1.1
4,883,331	-		EFB2_04644	0.72	+1.0
4,883,331	-		EFB2_04644	0.72	-0.5
4,883,331	-		EFB2_04644	0.72	-1.6
4,883,331	-		EFB2_04644	0.72	+1.0
4,883,339	+		EFB2_04644	0.72	-3.2
4,883,340	-		EFB2_04644	0.73	+0.7
4,883,340	-		EFB2_04644	0.73	+1.7
4,883,365	-		EFB2_04644	0.74	-4.2
4,883,382	+		EFB2_04644	0.75	-2.8
4,883,382	+		EFB2_04644	0.75	+3.0
4,883,382	+		EFB2_04644	0.75	+0.5
4,883,391	+		EFB2_04644	0.75	+0.7
4,883,391	+		EFB2_04644	0.75	-3.7
4,883,392	-		EFB2_04644	0.75	-4.5
4,883,392	-		EFB2_04644	0.75	-1.4
4,883,392	-		EFB2_04644	0.75	+3.7
4,883,392	-		EFB2_04644	0.75	+1.5
4,883,392	-		EFB2_04644	0.75	-1.8
4,883,392	-		EFB2_04644	0.75	-3.0
4,883,392	-		EFB2_04644	0.75	-3.6
4,883,392	-		EFB2_04644	0.75	+1.6
4,883,392	-		EFB2_04644	0.75	+0.4
4,883,432	+		EFB2_04644	0.78	+1.4
4,883,432	+		EFB2_04644	0.78	+0.9
4,883,433	-		EFB2_04644	0.78	-2.5
4,883,433	-		EFB2_04644	0.78	-0.2
4,883,457	+		EFB2_04644	0.79	+0.9
4,883,457	+		EFB2_04644	0.79	-3.2
4,883,457	+		EFB2_04644	0.79	+3.5
4,883,457	+		EFB2_04644	0.79	-0.8
4,883,457	+		EFB2_04644	0.79	-1.6
4,883,457	+		EFB2_04644	0.79	-0.9
4,883,457	+		EFB2_04644	0.79	-0.4
4,883,457	+		EFB2_04644	0.79	+0.6
4,883,457	+		EFB2_04644	0.79	-1.6
4,883,457	+		EFB2_04644	0.79	+0.5
4,883,457	+		EFB2_04644	0.79	+1.4
4,883,457	+		EFB2_04644	0.79	-3.9
4,883,457	+		EFB2_04644	0.79	-3.5
4,883,457	+		EFB2_04644	0.79	-0.4
4,883,458	-		EFB2_04644	0.79	+0.3
4,883,458	-		EFB2_04644	0.79	+1.6
4,883,458	-		EFB2_04644	0.79	-3.1
4,883,458	-		EFB2_04644	0.79	-2.9
4,883,458	-		EFB2_04644	0.79	+1.0
4,883,458	-		EFB2_04644	0.79	+1.3
4,883,458	-		EFB2_04644	0.79	+2.0
4,883,458	-		EFB2_04644	0.79	-0.7
4,883,458	-		EFB2_04644	0.79	+0.8
4,883,458	-		EFB2_04644	0.79	+0.2
4,883,458	-		EFB2_04644	0.79	+0.2
4,883,458	-		EFB2_04644	0.79	+2.4
4,883,458	-		EFB2_04644	0.79	-0.7
4,883,458	-		EFB2_04644	0.79	-2.6
4,883,459	+		EFB2_04644	0.79	+0.8
4,883,459	+		EFB2_04644	0.79	+2.0
4,883,459	+		EFB2_04644	0.79	+1.7
4,883,459	+		EFB2_04644	0.79	-3.6
4,883,459	+		EFB2_04644	0.79	-3.6
4,883,459	+		EFB2_04644	0.79	-0.5
4,883,460	-		EFB2_04644	0.79	-0.4
4,883,460	-		EFB2_04644	0.79	-3.0
4,883,460	-		EFB2_04644	0.79	+0.8
4,883,460	-		EFB2_04644	0.79	+3.3
4,883,460	-		EFB2_04644	0.79	-0.8
4,883,460	-		EFB2_04644	0.79	-0.5
4,883,460	-		EFB2_04644	0.79	+1.1
4,883,466	+		EFB2_04644	0.79	+0.3
4,883,467	-		EFB2_04644	0.79	+1.0
4,883,467	-		EFB2_04644	0.79	-2.5
4,883,508	+		EFB2_04644	0.82	-0.7
4,883,508	+		EFB2_04644	0.82	-1.0
4,883,508	+		EFB2_04644	0.82	-0.6
4,883,509	-		EFB2_04644	0.82	+0.6
4,883,509	-		EFB2_04644	0.82	-3.5
4,883,515	+		EFB2_04644	0.82	-1.1
4,883,515	+		EFB2_04644	0.82	-0.2
4,883,517	+		EFB2_04644	0.82	+1.8
4,883,517	+		EFB2_04644	0.82	+2.2
4,883,517	+		EFB2_04644	0.82	-2.8
4,883,517	+		EFB2_04644	0.82	-0.7
4,883,517	+		EFB2_04644	0.82	-0.8
4,883,517	+		EFB2_04644	0.82	+1.4
4,883,517	+		EFB2_04644	0.82	+0.4
4,883,517	+		EFB2_04644	0.82	+1.6
4,883,517	+		EFB2_04644	0.82	+0.7
4,883,517	+		EFB2_04644	0.82	+3.0
4,883,517	+		EFB2_04644	0.82	+0.3
4,883,517	+		EFB2_04644	0.82	+0.2
4,883,517	+		EFB2_04644	0.82	-1.3
4,883,517	+		EFB2_04644	0.82	+0.4
4,883,517	+		EFB2_04644	0.82	-0.0
4,883,518	-		EFB2_04644	0.82	-0.3
4,883,518	-		EFB2_04644	0.82	-3.4
4,883,518	-		EFB2_04644	0.82	-1.8
4,883,518	-		EFB2_04644	0.82	-0.6
4,883,518	-		EFB2_04644	0.82	-3.5
4,883,518	-		EFB2_04644	0.82	+2.0
4,883,518	-		EFB2_04644	0.82	-0.4
4,883,518	-		EFB2_04644	0.82	+1.8
4,883,530	+		EFB2_04644	0.83	-0.8
4,883,531	-		EFB2_04644	0.83	-2.5
4,883,548	+		EFB2_04644	0.84	+1.1
4,883,548	+		EFB2_04644	0.84	+0.8
4,883,548	+		EFB2_04644	0.84	-0.6
4,883,548	+		EFB2_04644	0.84	+0.5
4,883,548	+		EFB2_04644	0.84	-0.8
4,883,548	+		EFB2_04644	0.84	+1.1
4,883,548	+		EFB2_04644	0.84	-0.2
4,883,548	+		EFB2_04644	0.84	+0.7
4,883,548	+		EFB2_04644	0.84	+2.6
4,883,548	+		EFB2_04644	0.84	+0.9
4,883,549	-		EFB2_04644	0.84	+2.7
4,883,549	-		EFB2_04644	0.84	-2.4
4,883,549	-		EFB2_04644	0.84	+0.1
4,883,549	-		EFB2_04644	0.84	-1.1
4,883,549	-		EFB2_04644	0.84	-0.3
4,883,549	-		EFB2_04644	0.84	+0.7
4,883,549	-		EFB2_04644	0.84	-0.8
4,883,549	-		EFB2_04644	0.84	+0.6
4,883,615	+		EFB2_04644	0.87	+0.3
4,883,615	+		EFB2_04644	0.87	-0.3
4,883,615	+		EFB2_04644	0.87	+0.9
4,883,615	+		EFB2_04644	0.87	+0.1
4,883,616	-		EFB2_04644	0.88	-1.3
4,883,616	-		EFB2_04644	0.88	-1.9
4,883,616	-		EFB2_04644	0.88	-2.4
4,883,638	+		EFB2_04644	0.89	-1.5
4,883,638	+		EFB2_04644	0.89	-1.4
4,883,638	+		EFB2_04644	0.89	+1.4
4,883,638	+		EFB2_04644	0.89	+1.5
4,883,639	-		EFB2_04644	0.89	+1.2
4,883,639	-		EFB2_04644	0.89	+0.4
4,883,639	-		EFB2_04644	0.89	+1.5
4,883,639	-		EFB2_04644	0.89	+2.1
4,883,703	+				-1.4
4,883,703	+				-1.2
4,883,704	-				+1.3
4,883,724	+				+0.5
4,883,724	+				+2.8
4,883,724	+				-0.3
4,883,724	+				+1.0
4,883,725	-				-0.9
4,883,725	-				-4.1
4,883,725	-				-2.4
4,883,725	-				-0.2
4,883,725	-				+1.6
4,883,725	-				-2.2
4,883,730	+				+1.8
4,883,730	+				+0.4
4,883,730	+				-1.3
4,883,730	+				-3.3
4,883,730	+				+0.4
4,883,730	+				-1.6
4,883,731	-				-0.3
4,883,731	-				-2.3
4,883,731	-				+1.4
4,883,731	-				+0.1
4,883,731	-				-0.3
4,883,731	-				-0.2
4,883,766	+				-0.7
4,883,766	+				-0.3
4,883,775	+				+0.8
4,883,775	+				+0.2
4,883,775	+				+0.7
4,883,776	-				+0.0
4,883,776	-				-3.0
4,883,778	+				+0.3
4,883,778	+				-0.8
4,883,778	+				-0.3
4,883,778	+				+0.4
4,883,778	+				-3.2
4,883,779	-				-1.0
4,883,779	-				-2.0
4,883,779	-				+0.1
4,883,779	-				-1.8
4,883,779	-				+1.3
4,883,779	-				-0.5
4,883,839	-				+0.1
4,883,847	+				+1.6
4,883,847	+				+0.2
4,883,847	+				+1.1
4,883,847	+				-1.3
4,883,847	+				+0.1
4,883,848	-				+0.7
4,883,848	-				+0.4
4,883,848	-				+0.5
4,883,848	-				-1.6
4,883,848	-				+3.0
4,883,848	-				-0.1
4,883,848	-				+1.1
4,883,848	-				-0.3
4,883,861	+				+2.0
4,883,861	+				+1.6
4,883,861	+				+0.8
4,883,861	+				+0.5
4,883,861	+				+1.3
4,883,861	+				-0.3
4,883,861	+				+1.3
4,883,862	-				-0.4
4,883,862	-				+0.4
4,883,862	-				-2.8
4,883,862	-				+0.2
4,883,862	-				-0.5
4,883,862	-				-0.4
4,883,862	-				-0.5
4,883,890	+				-2.5
4,883,890	+				-0.5
4,883,890	+				-0.5
4,883,890	+				-0.0
4,883,890	+				+2.0
4,883,890	+				+0.1
4,883,890	+				-4.1
4,883,890	+				+1.8
4,883,890	+				+1.4
4,883,890	+				-0.3
4,883,891	-				+1.4
4,883,891	-				-0.2
4,883,891	-				+0.7
4,883,891	-				+1.3
4,883,891	-				-1.6
4,883,891	-				+0.9
4,883,891	-				+1.1
4,883,891	-				+0.7
4,883,894	-				-2.3
4,883,951	+				+0.2
4,883,951	+				-0.7
4,883,952	-				+0.4
4,883,952	-				-1.1
4,883,952	-				-1.9
4,883,952	-				+2.6
4,883,955	+				-2.5
4,883,955	+				-1.0
4,883,955	+				-1.1
4,883,955	+				+0.0
4,883,955	+				-1.2
4,883,955	+				-3.2
4,883,955	+				+0.6
4,883,955	+				-2.4
4,883,955	+				+1.6
4,883,955	+				-0.1
4,883,955	+				-2.3
4,883,955	+				-3.7
4,883,955	+				+1.0
4,883,955	+				-2.0
4,883,955	+				-0.3
4,883,955	+				+0.1
4,883,955	+				-0.1
4,883,955	+				-3.5
4,883,955	+				+0.3
4,883,955	+				+2.0
4,883,955	+				+1.0
4,883,955	+				-1.9
4,883,955	+				-3.0
4,883,955	+				+0.2
4,883,955	+				-2.5
4,883,955	+				-2.2
4,883,955	+				+0.4
4,883,955	+				+1.2
4,883,955	+				+0.5
4,883,955	+				-1.1
4,883,955	+				-1.4
4,883,955	+				-1.8
4,883,955	+				-1.1
4,883,955	+				-2.2
4,883,955	+				-2.3
4,883,955	+				-3.0
4,883,955	+				-0.3
4,883,955	+				+1.3
4,883,955	+				+0.4
4,883,955	+				-0.2
4,883,956	-				-5.1
4,883,956	-				+0.3
4,883,956	-				+1.5
4,883,956	-				+0.3
4,883,956	-				+0.6
4,883,956	-				+1.6
4,883,956	-				-0.1
4,883,956	-				-0.4
4,883,956	-				-2.2
4,883,956	-				-1.4
4,883,956	-				-0.9
4,883,956	-				+1.1
4,883,956	-				-0.4
4,883,956	-				+0.5
4,883,956	-				-3.3
4,883,956	-				-0.2
4,883,956	-				+0.6
4,883,956	-				+0.8
4,883,956	-				+0.7
4,883,956	-				+0.4
4,883,956	-				-2.9
4,883,956	-				-1.0
4,883,956	-				-0.8
4,883,956	-				-0.7
4,883,956	-				+0.2
4,883,956	-				-1.2
4,883,956	-				-0.8
4,883,956	-				+1.5
4,883,956	-				-1.1
4,883,956	-				-0.1
4,883,956	-				-2.2
4,883,956	-				+0.8
4,883,956	-				+1.2
4,883,956	-				+2.7
4,883,956	-				-1.2
4,883,956	-				+0.9
4,883,956	-				-0.7
4,883,956	-				-0.7
4,883,956	-				-3.5
4,883,956	-				-3.7
4,883,956	-				+0.3
4,883,956	-				+0.3
4,883,956	-				-0.4
4,883,956	-				+0.8
4,883,956	-				+0.4
4,883,956	-				-0.5
4,883,956	-				-0.5
4,883,960	+				-1.4
4,883,960	+				+0.4
4,883,960	+				+1.7
4,883,960	+				-0.1
4,883,960	+				+0.3
4,883,960	+				+0.6
4,883,961	-				-0.5
4,883,961	-				-0.8
4,883,961	-				-0.9
4,883,961	-				+0.1
4,883,961	-				-2.7
4,883,961	-				-2.1
4,883,962	-				-0.2
4,883,963	+				+1.0
4,883,963	+				-0.8
4,883,963	+				+0.7
4,883,963	+				-1.8
4,883,963	+				-1.1
4,883,963	+				-3.5
4,883,963	+				-0.9
4,883,963	+				-2.5
4,883,963	+				+0.7
4,883,963	+				+0.6
4,883,963	+				+0.7
4,883,963	+				+0.3
4,883,964	-				-0.1
4,883,964	-				+1.0
4,883,964	-				+0.7
4,883,964	-				-3.1
4,883,964	-				+1.0
4,883,964	-				-3.3
4,883,964	-				+0.9
4,883,964	-				-0.3
4,883,964	-				+3.2
4,883,964	-				+1.1
4,883,964	-				-1.4
4,883,964	-				+0.0
4,883,964	-				+0.7
4,883,964	-				+0.5
4,883,964	-				+0.1
4,884,065	+				+0.5
4,884,066	-				+1.4
4,884,068	+				-1.3
4,884,068	+				-1.9
4,884,068	+				-2.9
4,884,068	+				-2.8
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