Strain Fitness in Escherichia fergusonii Becca around EFB2_04544

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
4,768,828	+		EFB2_04543	0.31	-1.7
4,768,828	+		EFB2_04543	0.31	+1.0
4,768,829	-		EFB2_04543	0.31	-2.6
4,768,829	-		EFB2_04543	0.31	-2.0
4,768,829	-		EFB2_04543	0.31	+0.4
4,768,895	+		EFB2_04543	0.36	+1.3
4,768,895	+		EFB2_04543	0.36	+0.5
4,768,895	+		EFB2_04543	0.36	-0.0
4,768,895	+		EFB2_04543	0.36	-1.6
4,768,895	+		EFB2_04543	0.36	-2.6
4,768,895	+		EFB2_04543	0.36	-1.1
4,768,895	+		EFB2_04543	0.36	+0.5
4,768,895	+		EFB2_04543	0.36	+0.8
4,768,895	+		EFB2_04543	0.36	-3.0
4,768,895	+		EFB2_04543	0.36	-2.4
4,768,896	-		EFB2_04543	0.36	+0.5
4,768,896	-		EFB2_04543	0.36	-2.1
4,768,896	-		EFB2_04543	0.36	-0.8
4,768,896	-		EFB2_04543	0.36	+1.1
4,768,896	-		EFB2_04543	0.36	+0.8
4,768,896	-		EFB2_04543	0.36	-0.5
4,768,896	-		EFB2_04543	0.36	-1.2
4,768,896	-		EFB2_04543	0.36	+1.0
4,768,896	-		EFB2_04543	0.36	+0.1
4,768,896	-		EFB2_04543	0.36	+4.6
4,768,901	-		EFB2_04543	0.36	+0.4
4,768,912	+		EFB2_04543	0.37	+0.5
4,768,973	+		EFB2_04543	0.41	+0.0
4,768,973	+		EFB2_04543	0.41	-2.3
4,768,994	+		EFB2_04543	0.42	+0.9
4,768,994	+		EFB2_04543	0.42	+0.6
4,768,995	-		EFB2_04543	0.43	-2.7
4,768,995	-		EFB2_04543	0.43	+1.7
4,769,071	+		EFB2_04543	0.48	-0.6
4,769,071	+		EFB2_04543	0.48	+1.1
4,769,072	-		EFB2_04543	0.48	+0.4
4,769,072	-		EFB2_04543	0.48	-2.5
4,769,125	+		EFB2_04543	0.52	-0.3
4,769,320	+		EFB2_04543	0.65	-1.4
4,769,320	+		EFB2_04543	0.65	+0.7
4,769,320	+		EFB2_04543	0.65	-0.3
4,769,321	-		EFB2_04543	0.66	+0.1
4,769,329	+		EFB2_04543	0.66	-1.2
4,769,377	+		EFB2_04543	0.69	-0.6
4,769,377	+		EFB2_04543	0.69	-0.3
4,769,377	+		EFB2_04543	0.69	+1.0
4,769,378	-		EFB2_04543	0.70	+1.3
4,769,402	+		EFB2_04543	0.71	+0.2
4,769,402	+		EFB2_04543	0.71	-0.6
4,769,403	-		EFB2_04543	0.71	-0.2
4,769,403	-		EFB2_04543	0.71	-0.4
4,769,408	+		EFB2_04543	0.72	+2.0
4,769,408	+		EFB2_04543	0.72	+2.9
4,769,408	+		EFB2_04543	0.72	+1.6
4,769,408	+		EFB2_04543	0.72	+0.7
4,769,408	+		EFB2_04543	0.72	-2.7
4,769,408	+		EFB2_04543	0.72	+0.7
4,769,409	-		EFB2_04543	0.72	+1.4
4,769,409	-		EFB2_04543	0.72	+1.4
4,769,409	-		EFB2_04543	0.72	+0.3
4,769,409	-		EFB2_04543	0.72	-0.5
4,769,409	-		EFB2_04543	0.72	+1.5
4,769,409	-		EFB2_04543	0.72	-2.5
4,769,409	-		EFB2_04543	0.72	-0.3
4,769,409	-		EFB2_04543	0.72	-0.2
4,769,409	-		EFB2_04543	0.72	+1.3
4,769,409	-		EFB2_04543	0.72	+0.0
4,769,409	-		EFB2_04543	0.72	-1.8
4,769,438	+		EFB2_04543	0.74	-0.5
4,769,438	+		EFB2_04543	0.74	+0.3
4,769,438	+		EFB2_04543	0.74	+0.9
4,769,438	+		EFB2_04543	0.74	-2.2
4,769,438	+		EFB2_04543	0.74	-3.5
4,769,439	-		EFB2_04543	0.74	+1.8
4,769,439	-		EFB2_04543	0.74	+1.2
4,769,439	-		EFB2_04543	0.74	-1.9
4,769,439	-		EFB2_04543	0.74	+1.0
4,769,439	-		EFB2_04543	0.74	+0.4
4,769,460	+		EFB2_04543	0.75	-1.9
4,769,460	+		EFB2_04543	0.75	-3.9
4,769,460	+		EFB2_04543	0.75	+1.2
4,769,460	+		EFB2_04543	0.75	-5.0
4,769,460	+		EFB2_04543	0.75	-2.9
4,769,460	+		EFB2_04543	0.75	-0.3
4,769,460	+		EFB2_04543	0.75	-2.2
4,769,460	+		EFB2_04543	0.75	+1.7
4,769,460	+		EFB2_04543	0.75	+0.2
4,769,461	-		EFB2_04543	0.75	-4.1
4,769,461	-		EFB2_04543	0.75	+1.0
4,769,461	-		EFB2_04543	0.75	-2.6
4,769,461	-		EFB2_04543	0.75	-2.4
4,769,461	-		EFB2_04543	0.75	+0.4
4,769,461	-		EFB2_04543	0.75	+1.2
4,769,470	+		EFB2_04543	0.76	-0.2
4,769,471	-		EFB2_04543	0.76	-3.7
4,769,471	-		EFB2_04543	0.76	-2.1
4,769,471	-		EFB2_04543	0.76	-1.2
4,769,480	-		EFB2_04543	0.77	-0.0
4,769,513	+		EFB2_04543	0.79	-2.6
4,769,513	+		EFB2_04543	0.79	-1.9
4,769,513	+		EFB2_04543	0.79	+0.4
4,769,513	+		EFB2_04543	0.79	+1.4
4,769,513	+		EFB2_04543	0.79	+1.1
4,769,513	+		EFB2_04543	0.79	+0.2
4,769,513	+		EFB2_04543	0.79	+1.5
4,769,513	+		EFB2_04543	0.79	-1.0
4,769,514	-		EFB2_04543	0.79	+1.1
4,769,514	-		EFB2_04543	0.79	-2.0
4,769,514	-		EFB2_04543	0.79	+0.1
4,769,514	-		EFB2_04543	0.79	+1.5
4,769,514	-		EFB2_04543	0.79	-0.8
4,769,514	-		EFB2_04543	0.79	-0.2
4,769,514	-		EFB2_04543	0.79	-0.6
4,769,514	-		EFB2_04543	0.79	+0.5
4,769,514	-		EFB2_04543	0.79	+0.5
4,769,516	+		EFB2_04543	0.79	-1.1
4,769,516	+		EFB2_04543	0.79	+0.8
4,769,516	+		EFB2_04543	0.79	+0.8
4,769,516	+		EFB2_04543	0.79	-0.5
4,769,516	+		EFB2_04543	0.79	+3.2
4,769,516	+		EFB2_04543	0.79	+1.2
4,769,516	+		EFB2_04543	0.79	-1.9
4,769,516	+		EFB2_04543	0.79	+1.5
4,769,517	-		EFB2_04543	0.79	+0.2
4,769,517	-		EFB2_04543	0.79	-0.0
4,769,517	-		EFB2_04543	0.79	+1.8
4,769,527	+		EFB2_04543	0.80	+0.1
4,769,527	+		EFB2_04543	0.80	+4.2
4,769,528	-		EFB2_04543	0.80	+0.4
4,769,528	-		EFB2_04543	0.80	-0.0
4,769,528	-		EFB2_04543	0.80	-1.9
4,769,558	+		EFB2_04543	0.82	-1.1
4,769,559	-		EFB2_04543	0.82	-1.1
4,769,559	-		EFB2_04543	0.82	+0.9
4,769,559	-		EFB2_04543	0.82	-0.7
4,769,610	+		EFB2_04543	0.86	-2.7
4,769,611	-		EFB2_04543	0.86	+0.4
4,769,611	-		EFB2_04543	0.86	+2.6
4,769,611	-		EFB2_04543	0.86	+0.6
4,769,647	+		EFB2_04543	0.89	+0.8
4,769,647	+		EFB2_04543	0.89	+0.3
4,769,647	+		EFB2_04543	0.89	-0.7
4,769,647	+		EFB2_04543	0.89	+3.0
4,769,647	+		EFB2_04543	0.89	+2.7
4,769,648	-		EFB2_04543	0.89	-2.0
4,769,648	-		EFB2_04543	0.89	+0.3
4,769,648	-		EFB2_04543	0.89	+2.1
4,769,648	-		EFB2_04543	0.89	+0.9
4,769,648	-		EFB2_04543	0.89	+0.4
4,769,668	+				-2.8
4,769,668	+				-0.6
4,769,668	+				-1.6
4,769,669	-				+0.6
4,769,669	-				+2.7
4,769,669	-				-0.7
4,769,669	-				-1.6
4,769,669	-				+0.1
4,769,669	-				+0.6
4,769,698	+				+0.7
4,769,698	+				+2.5
4,769,699	-				-0.9
4,769,699	-				+1.5
4,769,713	+				-0.1
4,769,713	+				-1.2
4,769,713	+				+1.5
4,769,713	+				-1.2
4,769,713	+				+1.0
4,769,713	+				-1.5
4,769,713	+				+1.3
4,769,713	+				+1.6
4,769,713	+				-3.3
4,769,713	+				-3.0
4,769,713	+				-1.3
4,769,713	+				+2.0
4,769,713	+				+0.9
4,769,713	+				+1.0
4,769,713	+				-0.3
4,769,713	+				-2.1
4,769,713	+				-3.0
4,769,713	+				-1.1
4,769,713	+				+0.1
4,769,713	+				-0.1
4,769,713	+				-2.3
4,769,713	+				+1.1
4,769,713	+				+0.4
4,769,713	+				-0.6
4,769,713	+				+2.1
4,769,713	+				-3.3
4,769,713	+				+0.6
4,769,713	+				+1.8
4,769,713	+				+0.4
4,769,713	+				-1.9
4,769,713	+				+0.2
4,769,713	+				+1.3
4,769,714	-				-1.0
4,769,714	-				+0.8
4,769,714	-				-0.2
4,769,714	-				+1.4
4,769,714	-				-0.6
4,769,714	-				+0.8
4,769,714	-				+1.5
4,769,714	-				+2.1
4,769,714	-				-1.9
4,769,714	-				-1.9
4,769,714	-				+2.0
4,769,714	-				+0.4
4,769,714	-				+0.4
4,769,714	-				+1.2
4,769,714	-				-1.5
4,769,714	-				-2.0
4,769,714	-				-0.1
4,769,714	-				+0.4
4,769,714	-				-3.6
4,769,714	-				-0.6
4,769,714	-				-0.7
4,769,714	-				+0.3
4,769,714	-				+0.7
4,769,714	-				+0.5
4,769,714	-				-2.2
4,769,714	-				-0.0
4,769,714	-				+1.0
4,769,714	-				-1.0
4,769,714	-				+1.2
4,769,714	-				-3.9
4,769,714	-				+0.8
4,769,714	-				+0.7
4,769,714	-				-3.0
4,769,714	-				+0.7
4,769,717	+				+0.8
4,769,717	+				+0.9
4,769,717	+				+0.1
4,769,717	+				-1.3
4,769,717	+				-0.2
4,769,717	+				+1.0
4,769,717	+				+1.7
4,769,717	+				+0.5
4,769,717	+				+2.2
4,769,717	+				+2.1
4,769,717	+				+0.5
4,769,717	+				-0.5
4,769,717	+				+1.4
4,769,717	+				+0.9
4,769,717	+				-0.5
4,769,718	-				+3.2
4,769,718	-				-0.2
4,769,718	-				-0.8
4,769,718	-				-0.1
4,769,718	-				-2.3
4,769,718	-				+1.5
4,769,718	-				-0.2
4,769,718	-				+0.5
4,769,718	-				+0.5
4,769,718	-				+0.6
4,769,718	-				+1.0
4,769,718	-				-1.6
4,769,718	-				+0.3
4,769,721	-				+0.9
4,769,721	-				-2.6
4,769,721	-				+3.1
4,769,756	+				-0.8
4,769,756	+				-0.6
4,769,757	-				-1.6
4,769,757	-				-0.5
4,769,757	-				+1.5
4,769,757	-				-2.8
4,769,760	+				-0.2
4,769,760	+				+0.6
4,769,761	-				-0.3
4,769,782	+				+0.0
4,769,783	-				+1.4
4,769,783	-				-0.5
4,769,803	+				-0.6
4,769,804	-				+0.2
4,769,804	-				+1.7
4,769,822	+				+1.0
4,769,823	-				-1.3
4,769,857	+				-2.9
4,769,857	+				-3.1
4,769,866	+				+0.1
4,769,866	+				-0.2
4,769,866	+				+0.0
4,769,867	-				+0.9
4,769,867	-				+1.0
4,769,867	-				-0.3
4,769,867	-				-3.3
4,769,867	-				-0.9
4,769,867	-				-0.1
4,769,867	-				-1.6
4,769,918	+				+3.5
4,769,918	+				-0.6
4,769,918	+				+0.4
4,769,918	+				+1.3
4,769,918	+				+0.7
4,769,918	+				-2.2
4,769,918	+				+1.7
4,769,918	+				-0.8
4,769,918	+				+4.3
4,769,918	+				-3.1
4,769,918	+				+0.2
4,769,918	+				-1.6
4,769,918	+				-1.3
4,769,918	+				+0.8
4,769,919	-				+0.3
4,769,919	-				+0.3
4,769,919	-				+0.7
4,769,919	-				+2.2
4,769,919	-				-0.8
4,769,919	-				+0.8
4,769,919	-				-0.0
4,769,919	-				-0.5
4,769,919	-				-1.6
4,769,933	+				+1.0
4,769,933	+				+0.0
4,769,933	+				+0.3
4,769,933	+				-0.1
4,769,933	+				+0.6
4,769,933	+				-4.0
4,769,933	+				+1.1
4,769,933	+				-0.3
4,769,933	+				-2.2
4,769,933	+				+1.2
4,769,933	+				-2.3
4,769,933	+				-2.9
4,769,933	+				+1.0
4,769,933	+				-2.9
4,769,933	+				+1.1
4,769,933	+				+0.2
4,769,933	+				-2.9
4,769,933	+				+0.6
4,769,933	+				+0.5
4,769,933	+				-1.3
4,769,933	+				-0.8
4,769,933	+				+0.5
4,769,933	+				+0.6
4,769,933	+				+1.2
4,769,933	+				-1.0
4,769,934	-				-0.1
4,769,934	-				-3.9
4,769,934	-				+1.6
4,769,934	-				+1.6
4,769,934	-				+0.6
4,769,934	-				-1.6
4,769,934	-				+1.0
4,769,934	-				+0.1
4,769,934	-				+0.7
4,769,934	-				-0.5
4,769,934	-				-2.5
4,769,934	-				+1.6
4,769,934	-				+0.9
4,769,934	-				+1.6
4,769,934	-				-0.7
4,769,934	-				+1.2
4,769,934	-				+0.1
4,769,934	-				-2.6
4,769,934	-				-1.8
4,769,934	-				-1.5
4,769,934	-				+1.2
4,769,934	-				-0.8
4,769,934	-				+0.4
4,770,024	+		EFB2_04544	0.18	-2.2
4,770,072	+		EFB2_04544	0.22	+2.0
4,770,072	+		EFB2_04544	0.22	-2.6
4,770,073	-		EFB2_04544	0.22	-1.2
4,770,134	+		EFB2_04544	0.27	-0.9
4,770,134	+		EFB2_04544	0.27	+0.1
4,770,134	+		EFB2_04544	0.27	-0.6
4,770,134	+		EFB2_04544	0.27	-2.0
4,770,187	+		EFB2_04544	0.32	-0.6
4,770,188	-		EFB2_04544	0.32	-1.3
4,770,188	-		EFB2_04544	0.32	+0.4
4,770,199	+		EFB2_04544	0.33	+0.6
4,770,199	+		EFB2_04544	0.33	-0.4
4,770,200	-		EFB2_04544	0.33	+0.0
4,770,242	+		EFB2_04544	0.36	-2.6
4,770,242	+		EFB2_04544	0.36	-1.4
4,770,255	+		EFB2_04544	0.38	-2.2
4,770,255	+		EFB2_04544	0.38	-4.3
4,770,255	+		EFB2_04544	0.38	+2.2
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