Strain Fitness in Escherichia fergusonii Becca around EFB2_04087

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
4,291,242	+		EFB2_04085	0.27	+0.9
4,291,242	+		EFB2_04085	0.27	+2.4
4,291,242	+		EFB2_04085	0.27	+0.9
4,291,242	+		EFB2_04085	0.27	-3.7
4,291,243	-		EFB2_04085	0.28	-0.9
4,291,243	-		EFB2_04085	0.28	-0.4
4,291,266	+		EFB2_04085	0.32	-2.9
4,291,266	+		EFB2_04085	0.32	+0.5
4,291,266	+		EFB2_04085	0.32	-2.9
4,291,267	-		EFB2_04085	0.33	-2.3
4,291,267	-		EFB2_04085	0.33	+0.2
4,291,285	+		EFB2_04085	0.36	-1.9
4,291,285	+		EFB2_04085	0.36	+0.4
4,291,286	-		EFB2_04085	0.37	+2.7
4,291,286	-		EFB2_04085	0.37	-0.9
4,291,303	+		EFB2_04085	0.40	+3.3
4,291,312	+		EFB2_04085	0.42	-1.0
4,291,312	+		EFB2_04085	0.42	-1.5
4,291,312	+		EFB2_04085	0.42	+0.4
4,291,312	+		EFB2_04085	0.42	+0.9
4,291,312	+		EFB2_04085	0.42	-2.5
4,291,312	+		EFB2_04085	0.42	-2.6
4,291,312	+		EFB2_04085	0.42	-0.3
4,291,313	-		EFB2_04085	0.42	+2.5
4,291,313	-		EFB2_04085	0.42	-1.4
4,291,313	-		EFB2_04085	0.42	+1.8
4,291,313	-		EFB2_04085	0.42	+0.3
4,291,313	-		EFB2_04085	0.42	-0.8
4,291,313	-		EFB2_04085	0.42	-1.4
4,291,313	-		EFB2_04085	0.42	-1.7
4,291,313	-		EFB2_04085	0.42	-0.2
4,291,333	+		EFB2_04085	0.47	-2.6
4,291,333	+		EFB2_04085	0.47	+0.2
4,291,333	+		EFB2_04085	0.47	+0.1
4,291,333	+		EFB2_04085	0.47	+0.6
4,291,334	-		EFB2_04085	0.47	-1.9
4,291,334	-		EFB2_04085	0.47	-0.6
4,291,334	-		EFB2_04085	0.47	+1.3
4,291,334	-		EFB2_04085	0.47	-1.7
4,291,390	+		EFB2_04085	0.59	+0.1
4,291,391	-		EFB2_04085	0.59	-0.7
4,291,396	+		EFB2_04085	0.60	+1.6
4,291,396	+		EFB2_04085	0.60	-1.6
4,291,397	-		EFB2_04085	0.60	+0.3
4,291,397	-		EFB2_04085	0.60	-0.4
4,291,397	-		EFB2_04085	0.60	-2.7
4,291,410	+		EFB2_04085	0.63	-1.1
4,291,410	+		EFB2_04085	0.63	+2.6
4,291,410	+		EFB2_04085	0.63	+1.2
4,291,410	+		EFB2_04085	0.63	+0.1
4,291,410	+		EFB2_04085	0.63	+1.6
4,291,410	+		EFB2_04085	0.63	+1.7
4,291,411	-		EFB2_04085	0.63	-0.4
4,291,411	-		EFB2_04085	0.63	-2.8
4,291,411	-		EFB2_04085	0.63	-2.1
4,291,411	-		EFB2_04085	0.63	-0.8
4,291,411	-		EFB2_04085	0.63	+0.2
4,291,411	-		EFB2_04085	0.63	-2.7
4,291,411	-		EFB2_04085	0.63	+0.8
4,291,418	+		EFB2_04085	0.65	-2.0
4,291,418	+		EFB2_04085	0.65	+0.0
4,291,418	+		EFB2_04085	0.65	-0.3
4,291,418	+		EFB2_04085	0.65	+2.1
4,291,418	+		EFB2_04085	0.65	-0.7
4,291,418	+		EFB2_04085	0.65	+2.8
4,291,419	-		EFB2_04085	0.65	+2.0
4,291,419	-		EFB2_04085	0.65	+0.9
4,291,419	-		EFB2_04085	0.65	-2.4
4,291,420	+		EFB2_04085	0.65	-2.4
4,291,420	+		EFB2_04085	0.65	-0.2
4,291,420	+		EFB2_04085	0.65	-2.7
4,291,421	-		EFB2_04085	0.65	+0.6
4,291,421	-		EFB2_04085	0.65	+1.0
4,291,421	-		EFB2_04085	0.65	-1.7
4,291,421	-		EFB2_04085	0.65	-1.6
4,291,421	-		EFB2_04085	0.65	+0.6
4,291,421	-		EFB2_04085	0.65	-0.0
4,291,455	+		EFB2_04085	0.72	+1.1
4,291,455	+		EFB2_04085	0.72	+1.0
4,291,455	+		EFB2_04085	0.72	-0.4
4,291,455	+		EFB2_04085	0.72	+0.1
4,291,455	+		EFB2_04085	0.72	+1.9
4,291,455	+		EFB2_04085	0.72	-0.6
4,291,455	+		EFB2_04085	0.72	-0.4
4,291,455	+		EFB2_04085	0.72	+2.2
4,291,456	-		EFB2_04085	0.73	+1.0
4,291,456	-		EFB2_04085	0.73	+0.9
4,291,456	-		EFB2_04085	0.73	-0.0
4,291,456	-		EFB2_04085	0.73	+0.4
4,291,456	-		EFB2_04085	0.73	-0.4
4,291,460	+		EFB2_04085	0.73	+1.0
4,291,554	+				+0.2
4,291,554	+				-1.4
4,291,554	+				+0.4
4,291,554	+				-0.9
4,291,554	+				-1.7
4,291,554	+				-0.9
4,291,554	+				-0.4
4,291,554	+				-0.3
4,291,555	-				-1.3
4,291,555	-				+0.0
4,291,555	-				-0.8
4,291,555	-				-0.7
4,291,555	-				-0.5
4,291,562	+				-1.4
4,291,563	-				+1.8
4,291,583	+				-2.3
4,291,583	+				-0.9
4,291,583	+				+0.4
4,291,583	+				+0.7
4,291,598	+				+0.4
4,291,598	+				+0.7
4,291,598	+				+1.9
4,291,598	+				-1.5
4,291,640	+				-1.3
4,291,640	+				-0.3
4,291,640	+				-3.3
4,291,640	+				-3.0
4,291,640	+				-0.6
4,291,643	+				-1.8
4,291,643	+				-0.6
4,291,643	+				-0.3
4,291,643	+				+0.1
4,291,643	+				+0.4
4,291,643	+				+0.3
4,291,643	+				-2.0
4,291,645	+				+0.3
4,291,652	+				+0.5
4,291,652	+				+0.8
4,291,652	+				+1.9
4,291,678	+				+1.4
4,291,678	+				-0.2
4,291,692	+				-3.5
4,291,692	+				+0.1
4,291,692	+				+2.9
4,291,692	+				-0.2
4,292,953	+				-1.0
4,292,967	+				-2.6
4,292,967	+				+1.8
4,292,967	+				-1.0
4,292,968	-				+0.8
4,292,968	-				-4.1
4,292,968	-				-2.1
4,292,968	-				-2.4
4,292,968	-				-3.4
4,292,968	-				-2.2
4,292,968	-				-2.7
4,292,968	-				-3.5
4,292,970	+				-1.2
4,292,970	+				-1.0
4,292,970	+				+1.4
4,292,971	-				-0.8
4,292,971	-				-2.8
4,292,971	-				-2.6
4,292,971	-				-2.3
4,292,971	-				-1.2
4,292,971	-				+1.2
4,292,971	-				+0.2
4,292,971	-				+0.5
4,292,971	-				-0.2
4,292,971	-				+3.2
4,292,989	+				+0.2
4,292,991	+				+0.8
4,292,991	+				+1.2
4,292,991	+				-0.4
4,292,991	+				+1.0
4,292,991	+				-0.9
4,292,991	+				-0.8
4,292,991	+				+0.4
4,292,991	+				-0.9
4,292,992	-				-0.0
4,292,992	-				-3.1
4,292,992	-				-0.3
4,292,992	-				+0.2
4,292,992	-				-1.6
4,292,992	-				-1.7
4,293,016	+				-0.4
4,293,016	+				-2.3
4,293,016	+				+3.0
4,293,016	+				+0.0
4,293,017	-				+1.3
4,293,017	-				+1.6
4,293,017	-				-2.5
4,293,035	+				-3.3
4,293,035	+				-0.2
4,293,036	-				-3.5
4,293,036	-				-0.1
4,293,073	+		EFB2_04088	0.11	-2.6
4,293,074	-		EFB2_04088	0.11	+1.5
4,293,074	-		EFB2_04088	0.11	+2.4
4,293,074	-		EFB2_04088	0.11	-2.3
4,293,187	+		EFB2_04088	0.34	+0.4
4,293,188	-		EFB2_04088	0.34	+0.8
4,293,188	-		EFB2_04088	0.34	+0.6
4,293,191	+		EFB2_04088	0.34	-3.5
4,293,191	+		EFB2_04088	0.34	+1.7
4,293,191	+		EFB2_04088	0.34	+1.0
4,293,191	+		EFB2_04088	0.34	+0.6
4,293,191	+		EFB2_04088	0.34	-1.8
4,293,191	+		EFB2_04088	0.34	-0.5
4,293,191	+		EFB2_04088	0.34	-2.5
4,293,191	+		EFB2_04088	0.34	-3.4
4,293,191	+		EFB2_04088	0.34	+1.0
4,293,191	+		EFB2_04088	0.34	-1.0
4,293,191	+		EFB2_04088	0.34	+0.3
4,293,191	+		EFB2_04088	0.34	+0.2
4,293,192	-		EFB2_04088	0.35	-1.3
4,293,192	-		EFB2_04088	0.35	-3.7
4,293,192	-		EFB2_04088	0.35	+1.5
4,293,192	-		EFB2_04088	0.35	+0.5
4,293,192	-		EFB2_04088	0.35	+0.3
4,293,192	-		EFB2_04088	0.35	-3.2
4,293,192	-		EFB2_04088	0.35	-0.2
4,293,192	-		EFB2_04088	0.35	-0.7
4,293,192	-		EFB2_04088	0.35	+1.7
4,293,192	-		EFB2_04088	0.35	-0.7
4,293,192	-		EFB2_04088	0.35	+1.9
4,293,192	-		EFB2_04088	0.35	-2.6
4,293,192	-		EFB2_04088	0.35	-2.4
4,293,200	+		EFB2_04088	0.36	+0.1
4,293,201	-		EFB2_04088	0.36	-2.7
4,293,201	-		EFB2_04088	0.36	-0.7
4,293,201	-		EFB2_04088	0.36	+0.4
4,293,201	-		EFB2_04088	0.36	+1.3
4,293,209	+		EFB2_04088	0.38	-1.7
4,293,220	+		EFB2_04088	0.40	-0.1
4,293,220	+		EFB2_04088	0.40	-0.6
4,293,220	+		EFB2_04088	0.40	+1.6
4,293,220	+		EFB2_04088	0.40	-2.0
4,293,221	-		EFB2_04088	0.40	-1.9
4,293,221	-		EFB2_04088	0.40	-1.2
4,293,230	+		EFB2_04088	0.42	-1.6
4,293,230	+		EFB2_04088	0.42	+1.0
4,293,230	+		EFB2_04088	0.42	-1.6
4,293,230	+		EFB2_04088	0.42	-2.0
4,293,230	+		EFB2_04088	0.42	-0.6
4,293,230	+		EFB2_04088	0.42	+0.7
4,293,231	-		EFB2_04088	0.42	+0.9
4,293,231	-		EFB2_04088	0.42	+0.3
4,293,231	-		EFB2_04088	0.42	+0.6
4,293,231	-		EFB2_04088	0.42	+0.7
4,293,261	+		EFB2_04088	0.48	-0.7
4,293,262	-		EFB2_04088	0.49	-0.2
4,293,262	-		EFB2_04088	0.49	+2.1
4,293,369	+		EFB2_04088	0.70	+1.6
4,293,369	+		EFB2_04088	0.70	-2.3
4,293,369	+		EFB2_04088	0.70	+0.6
4,293,369	+		EFB2_04088	0.70	-1.5
4,293,369	+		EFB2_04088	0.70	-1.3
4,293,369	+		EFB2_04088	0.70	+0.4
4,293,369	+		EFB2_04088	0.70	+1.3
4,293,369	+		EFB2_04088	0.70	+1.3
4,293,369	+		EFB2_04088	0.70	+1.7
4,293,370	-		EFB2_04088	0.71	+0.4
4,293,370	-		EFB2_04088	0.71	+0.4
4,293,370	-		EFB2_04088	0.71	-1.0
4,293,370	-		EFB2_04088	0.71	+1.2
4,293,370	-		EFB2_04088	0.71	-0.7
4,293,370	-		EFB2_04088	0.71	+0.8
4,293,370	-		EFB2_04088	0.71	+0.9
4,293,370	-		EFB2_04088	0.71	-2.2
4,293,370	-		EFB2_04088	0.71	-3.5
4,293,370	-		EFB2_04088	0.71	-1.7
4,293,431	+		EFB2_04088	0.83	-0.1
4,293,432	-		EFB2_04088	0.83	+1.1
4,293,432	-		EFB2_04088	0.83	+2.6
4,293,432	-		EFB2_04088	0.83	-0.6
4,293,432	-		EFB2_04088	0.83	-3.1
4,293,432	-		EFB2_04088	0.83	+0.4
4,293,487	+				+0.8
4,293,488	-				+0.4
4,293,488	-				-0.8
4,293,535	+				+2.5
4,293,536	-				+2.6
4,293,594	+				+2.0
4,293,595	-				-0.4
4,293,595	-				+1.4
4,293,603	+				+1.5
4,293,638	+				-3.6
4,293,639	-				-0.1
4,293,639	-				-1.7
4,293,639	-				-0.4
4,293,639	-				-2.4
4,293,640	+				+0.7
4,293,641	-				-1.0
4,293,641	-				+1.3
4,293,641	-				+0.7
4,293,645	+				-0.2
4,293,645	+				+0.5
4,293,645	+				+1.0
4,293,646	-				+0.3
4,293,646	-				+0.1
4,293,646	-				-2.9
4,293,646	-				-1.2
4,293,646	-				-1.6
4,293,652	+				-0.3
4,293,677	+				-2.2
4,293,677	+				-2.3
4,293,677	+				+1.8
4,293,677	+				-1.6
4,293,677	+				-2.7
4,293,678	-				+0.6
4,293,678	-				+0.9
4,293,678	-				-0.0
4,293,678	-				+2.2
4,293,678	-				+1.3
4,293,705	+				+1.2
4,293,705	+				+1.0
4,293,705	+				-1.9
4,293,705	+				-3.0
4,293,705	+				+1.5
4,293,705	+				-0.3
4,293,705	+				-1.7
4,293,705	+				+0.4
4,293,706	-				+0.3
4,293,706	-				+0.4
4,293,706	-				-1.7
4,293,706	-				-1.6
4,293,706	-				+1.8
4,293,706	-				-0.4
4,293,706	-				+0.5
4,293,706	-				-1.3
4,293,729	-				+1.1
4,293,753	+				-0.1
4,293,779	+				-0.8
4,293,780	-				+0.4
4,293,780	-				+2.3
4,293,780	-				+0.7
4,293,817	+				-0.0
4,293,817	+				+2.8
4,293,817	+				+0.2
4,293,817	+				+0.8
4,293,817	+				-1.2
4,293,817	+				+0.5
4,293,817	+				+1.2
4,293,817	+				+1.6
4,293,817	+				-1.8
4,293,818	-				-0.4
4,293,818	-				-1.7
4,293,818	-				-0.0
4,293,818	-				-0.8
4,293,818	-				-0.1
4,293,818	-				-0.1
4,293,818	-				-2.2
4,293,818	-				-3.0
4,293,837	+				+0.2
4,293,837	+				-0.5
4,293,837	+				-1.0
4,293,837	+				-1.5
4,293,837	+				+0.5
4,293,837	+				-1.0
4,293,837	+				-0.4
4,293,837	+				+2.1
4,293,837	+				+0.3
4,293,837	+				+1.1
4,293,838	-				-0.0
4,293,838	-				+0.0
4,293,838	-				-1.4
4,293,838	-				+0.4
4,293,838	-				-0.7
4,293,838	-				-1.4
4,293,838	-				+0.9
4,293,838	-				+2.6
4,293,838	-				+0.2
4,293,838	-				+1.7
4,293,838	-				+2.4
4,293,870	-				-3.0
4,293,870	-				-3.1
4,293,878	+				-0.8
4,293,879	-				+2.0
4,293,879	-				-2.4
4,293,879	-				-0.7
4,293,879	-				-1.3
4,293,894	+				-0.2
4,293,894	+				-3.0
4,293,894	+				-2.6
4,293,894	+				+0.7
4,293,894	+				+0.2
4,293,894	+				-1.0
4,293,894	+				+2.1
4,293,895	-				+1.1
4,293,916	+				+1.4
4,293,917	-				-0.7
4,293,917	-				+1.2
4,293,917	-				+1.3
4,293,922	-				-2.9
4,293,933	+				+2.3
4,293,934	-				-1.2
4,293,934	-				-1.8
4,293,934	-				+1.1
4,293,936	+				-1.2
4,293,936	+				-1.6
4,293,937	-				+1.3
4,293,952	+				+2.0
4,293,952	+				+0.4
4,293,952	+				-0.2
4,293,952	+				+0.6
4,293,952	+				+1.3
4,293,952	+				+0.1
4,293,952	+				+1.6
4,293,952	+				-4.1
4,293,952	+				+1.6
4,293,952	+				+0.5
4,293,953	-				-2.8
4,293,953	-				+1.9
4,293,953	-				+1.5
4,293,953	-				+0.2
4,293,953	-				-0.5
4,293,953	-				+0.5
4,293,953	-				+1.6
4,293,953	-				+0.4
4,293,953	-				+0.1
4,293,954	+				+0.8
4,293,954	+				-2.0
4,293,955	-				+0.6
4,293,959	+				-0.4