Strain Fitness in Escherichia fergusonii Becca around EFB2_03498

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,646,277	-		EFB2_03496	0.83	-0.6
3,646,277	-		EFB2_03496	0.83	-3.6
3,646,351	+				+1.8
3,646,359	-				-0.9
3,646,359	-				+0.6
3,646,378	-				-0.6
3,646,378	-				-0.2
3,646,391	+				-1.7
3,646,408	-				+1.2
3,646,408	-				+2.6
3,646,427	+				+1.5
3,646,427	+				-1.7
3,646,427	+				-2.2
3,646,428	-				+0.1
3,646,428	-				+1.2
3,646,428	-				-0.1
3,646,428	-				-0.7
3,646,542	+		EFB2_03497	0.16	+0.7
3,646,543	-		EFB2_03497	0.16	+1.1
3,646,633	+		EFB2_03497	0.26	-1.7
3,646,633	+		EFB2_03497	0.26	-0.8
3,646,633	+		EFB2_03497	0.26	+0.4
3,646,633	+		EFB2_03497	0.26	-2.9
3,646,634	-		EFB2_03497	0.27	-0.8
3,646,634	-		EFB2_03497	0.27	-1.3
3,646,689	+		EFB2_03497	0.33	-2.0
3,646,689	+		EFB2_03497	0.33	-2.2
3,646,689	+		EFB2_03497	0.33	+2.6
3,646,689	+		EFB2_03497	0.33	+1.1
3,646,689	+		EFB2_03497	0.33	+0.4
3,646,689	+		EFB2_03497	0.33	-1.9
3,646,689	+		EFB2_03497	0.33	+0.1
3,646,689	+		EFB2_03497	0.33	+0.5
3,646,689	+		EFB2_03497	0.33	-0.2
3,646,690	-		EFB2_03497	0.33	-1.2
3,646,690	-		EFB2_03497	0.33	+3.8
3,646,690	-		EFB2_03497	0.33	-0.1
3,646,690	-		EFB2_03497	0.33	+0.3
3,646,690	-		EFB2_03497	0.33	-1.8
3,646,690	-		EFB2_03497	0.33	+1.5
3,646,690	-		EFB2_03497	0.33	-0.8
3,646,690	-		EFB2_03497	0.33	+0.2
3,646,747	+		EFB2_03497	0.40	-2.9
3,646,748	-		EFB2_03497	0.40	-0.6
3,646,748	-		EFB2_03497	0.40	+1.0
3,646,756	+		EFB2_03497	0.41	+0.9
3,646,757	-		EFB2_03497	0.41	-2.6
3,646,757	-		EFB2_03497	0.41	-0.4
3,646,757	-		EFB2_03497	0.41	-0.0
3,646,757	-		EFB2_03497	0.41	-0.1
3,646,757	-		EFB2_03497	0.41	+2.7
3,646,760	-		EFB2_03497	0.41	-0.1
3,646,768	+		EFB2_03497	0.42	+0.3
3,646,768	+		EFB2_03497	0.42	+0.8
3,646,769	-		EFB2_03497	0.42	-2.0
3,646,769	-		EFB2_03497	0.42	-1.2
3,646,769	-		EFB2_03497	0.42	+0.0
3,646,792	+		EFB2_03497	0.45	+0.7
3,646,792	+		EFB2_03497	0.45	+1.3
3,646,792	+		EFB2_03497	0.45	-2.3
3,646,793	-		EFB2_03497	0.45	+1.8
3,646,793	-		EFB2_03497	0.45	+1.3
3,646,793	-		EFB2_03497	0.45	-2.1
3,646,793	-		EFB2_03497	0.45	-0.7
3,646,809	+		EFB2_03497	0.47	-0.8
3,646,810	-		EFB2_03497	0.47	+1.1
3,646,810	-		EFB2_03497	0.47	-3.5
3,646,810	-		EFB2_03497	0.47	-0.3
3,646,810	-		EFB2_03497	0.47	-0.1
3,646,810	-		EFB2_03497	0.47	-2.2
3,646,810	-		EFB2_03497	0.47	+1.3
3,646,811	+		EFB2_03497	0.47	-0.9
3,646,811	+		EFB2_03497	0.47	-2.2
3,646,811	+		EFB2_03497	0.47	-2.9
3,646,812	-		EFB2_03497	0.47	-1.2
3,646,812	-		EFB2_03497	0.47	+1.4
3,646,812	-		EFB2_03497	0.47	+0.6
3,646,812	-		EFB2_03497	0.47	+1.1
3,646,812	-		EFB2_03497	0.47	-2.7
3,646,812	-		EFB2_03497	0.47	-1.0
3,646,822	+		EFB2_03497	0.48	-1.4
3,646,822	+		EFB2_03497	0.48	-0.0
3,646,823	-		EFB2_03497	0.49	-0.9
3,646,823	-		EFB2_03497	0.49	+0.1
3,646,823	-		EFB2_03497	0.49	+0.4
3,646,834	+		EFB2_03497	0.50	+0.2
3,646,834	+		EFB2_03497	0.50	+1.3
3,646,888	-		EFB2_03497	0.56	-0.2
3,646,888	-		EFB2_03497	0.56	+0.6
3,646,984	+		EFB2_03497	0.67	-0.7
3,646,984	+		EFB2_03497	0.67	+1.0
3,646,984	+		EFB2_03497	0.67	-0.2
3,646,984	+		EFB2_03497	0.67	-0.1
3,646,984	+		EFB2_03497	0.67	-0.9
3,646,984	+		EFB2_03497	0.67	+0.1
3,646,984	+		EFB2_03497	0.67	-1.4
3,646,984	+		EFB2_03497	0.67	+0.7
3,646,984	+		EFB2_03497	0.67	-0.8
3,646,984	+		EFB2_03497	0.67	+0.9
3,646,984	+		EFB2_03497	0.67	+0.4
3,646,984	+		EFB2_03497	0.67	-2.2
3,646,984	+		EFB2_03497	0.67	+1.4
3,646,984	+		EFB2_03497	0.67	+1.0
3,646,984	+		EFB2_03497	0.67	+1.4
3,646,984	+		EFB2_03497	0.67	+1.3
3,646,984	+		EFB2_03497	0.67	-2.2
3,646,985	-		EFB2_03497	0.67	+3.2
3,646,985	-		EFB2_03497	0.67	+1.0
3,646,985	-		EFB2_03497	0.67	+2.0
3,646,985	-		EFB2_03497	0.67	-2.8
3,646,985	-		EFB2_03497	0.67	-1.4
3,646,985	-		EFB2_03497	0.67	-1.8
3,646,985	-		EFB2_03497	0.67	+1.8
3,646,985	-		EFB2_03497	0.67	+1.4
3,646,985	-		EFB2_03497	0.67	+1.5
3,646,985	-		EFB2_03497	0.67	-1.5
3,646,985	-		EFB2_03497	0.67	+2.3
3,646,985	-		EFB2_03497	0.67	+3.0
3,646,985	-		EFB2_03497	0.67	-3.4
3,646,985	-		EFB2_03497	0.67	-0.6
3,646,985	-		EFB2_03497	0.67	+1.6
3,646,985	-		EFB2_03497	0.67	+1.8
3,646,985	-		EFB2_03497	0.67	+1.3
3,646,985	-		EFB2_03497	0.67	-3.2
3,646,985	-		EFB2_03497	0.67	-0.0
3,646,985	-		EFB2_03497	0.67	-1.8
3,646,985	-		EFB2_03497	0.67	+1.2
3,646,985	-		EFB2_03497	0.67	-1.9
3,646,985	-		EFB2_03497	0.67	+1.0
3,646,985	-		EFB2_03497	0.67	-1.9
3,647,037	+		EFB2_03497	0.74	+3.0
3,647,037	+		EFB2_03497	0.74	+1.2
3,647,037	+		EFB2_03497	0.74	+1.7
3,647,037	+		EFB2_03497	0.74	+0.4
3,647,037	+		EFB2_03497	0.74	+1.4
3,647,038	-		EFB2_03497	0.74	+0.9
3,647,038	-		EFB2_03497	0.74	+1.5
3,647,038	-		EFB2_03497	0.74	+0.4
3,647,038	-		EFB2_03497	0.74	-1.7
3,647,038	-		EFB2_03497	0.74	-0.3
3,647,040	+		EFB2_03497	0.74	+1.3
3,647,040	+		EFB2_03497	0.74	-0.3
3,647,040	+		EFB2_03497	0.74	-1.0
3,647,041	-		EFB2_03497	0.74	-3.1
3,647,041	-		EFB2_03497	0.74	+1.0
3,647,067	+		EFB2_03497	0.77	+0.7
3,647,068	-		EFB2_03497	0.77	-0.4
3,647,068	-		EFB2_03497	0.77	+0.2
3,647,075	+		EFB2_03497	0.78	-3.0
3,647,143	-		EFB2_03497	0.86	+1.4
3,647,143	-		EFB2_03497	0.86	+0.6
3,647,143	-		EFB2_03497	0.86	-1.7
3,647,152	+		EFB2_03497	0.87	+0.1
3,647,153	-		EFB2_03497	0.87	-0.2
3,647,153	-		EFB2_03497	0.87	+2.2
3,647,153	-		EFB2_03497	0.87	+0.9
3,647,162	+		EFB2_03497	0.88	-1.3
3,647,163	-		EFB2_03497	0.88	-1.0
3,647,204	-				+0.4
3,647,234	+				+0.3
3,647,234	+				+1.1
3,647,235	-				-1.8
3,647,235	-				-3.1
3,647,238	+				-2.2
3,647,238	+				-2.3
3,647,238	+				+1.2
3,647,238	+				-2.0
3,647,238	+				+0.8
3,647,238	+				-1.9
3,647,238	+				-1.4
3,647,238	+				+0.4
3,647,238	+				+0.3
3,647,238	+				+1.4
3,647,238	+				-0.4
3,647,238	+				-1.4
3,647,238	+				-1.7
3,647,238	+				-0.6
3,647,238	+				-0.8
3,647,238	+				-2.3
3,647,238	+				+0.8
3,647,239	-				-0.6
3,647,239	-				-0.9
3,647,239	-				-2.0
3,647,239	-				-1.5
3,647,239	-				+1.9
3,647,239	-				-1.8
3,647,239	-				+0.1
3,647,239	-				+0.8
3,647,239	-				+0.8
3,647,239	-				-0.6
3,647,239	-				+0.8
3,647,239	-				-0.7
3,647,239	-				-2.0
3,647,239	-				+0.4
3,647,239	-				-3.8
3,647,239	-				-0.3
3,647,239	-				+1.2
3,647,239	-				+0.6
3,647,239	-				+0.5
3,647,239	-				+0.3
3,647,239	-				-0.0
3,647,239	-				+1.9
3,647,239	-				-0.2
3,647,239	-				+0.1
3,647,239	-				-1.0
3,647,239	-				-1.6
3,647,239	-				+0.2
3,647,239	-				-0.6
3,647,239	-				-1.4
3,647,239	-				+0.6
3,647,246	+				-0.8
3,647,310	+				-1.8
3,647,310	+				+0.3
3,647,311	-				-3.0
3,647,358	+				-1.4
3,647,359	-				+0.9
3,647,359	-				-1.5
3,647,359	-				-0.5
3,647,359	-				-1.7
3,647,359	-				+0.9
3,647,380	-				+0.7
3,647,384	+				+2.4
3,647,384	+				-1.6
3,647,384	+				-1.4
3,647,385	-				+2.4
3,647,385	-				-1.6
3,647,396	+				+0.6
3,647,448	+		EFB2_03498	0.11	+1.6
3,647,449	-		EFB2_03498	0.11	-2.9
3,647,458	+		EFB2_03498	0.11	-0.5
3,647,458	+		EFB2_03498	0.11	+0.7
3,647,458	+		EFB2_03498	0.11	-2.6
3,647,458	+		EFB2_03498	0.11	-1.0
3,647,458	+		EFB2_03498	0.11	+1.2
3,647,458	+		EFB2_03498	0.11	-1.7
3,647,458	+		EFB2_03498	0.11	-0.3
3,647,459	-		EFB2_03498	0.11	-1.2
3,647,459	-		EFB2_03498	0.11	-0.0
3,647,459	-		EFB2_03498	0.11	-3.6
3,647,459	-		EFB2_03498	0.11	+1.4
3,647,459	-		EFB2_03498	0.11	-3.8
3,647,512	+		EFB2_03498	0.15	+1.2
3,647,512	+		EFB2_03498	0.15	-2.3
3,647,512	+		EFB2_03498	0.15	-1.3
3,647,512	+		EFB2_03498	0.15	-2.0
3,647,512	+		EFB2_03498	0.15	-1.3
3,647,512	+		EFB2_03498	0.15	+3.6
3,647,512	+		EFB2_03498	0.15	+1.3
3,647,512	+		EFB2_03498	0.15	+1.2
3,647,512	+		EFB2_03498	0.15	-2.1
3,647,512	+		EFB2_03498	0.15	-2.6
3,647,512	+		EFB2_03498	0.15	+0.1
3,647,512	+		EFB2_03498	0.15	-1.7
3,647,513	-		EFB2_03498	0.15	+0.0
3,647,513	-		EFB2_03498	0.15	-0.9
3,647,513	-		EFB2_03498	0.15	+0.2
3,647,513	-		EFB2_03498	0.15	-2.1
3,647,513	-		EFB2_03498	0.15	-0.0
3,647,513	-		EFB2_03498	0.15	+0.5
3,647,513	-		EFB2_03498	0.15	+0.9
3,647,513	-		EFB2_03498	0.15	+1.4
3,647,513	-		EFB2_03498	0.15	+0.4
3,647,617	+		EFB2_03498	0.21	+0.6
3,647,617	+		EFB2_03498	0.21	-2.2
3,647,617	+		EFB2_03498	0.21	-2.8
3,647,617	+		EFB2_03498	0.21	+0.9
3,647,617	+		EFB2_03498	0.21	-1.9
3,647,617	+		EFB2_03498	0.21	+2.2
3,647,618	-		EFB2_03498	0.21	-1.6
3,647,618	-		EFB2_03498	0.21	+0.7
3,647,618	-		EFB2_03498	0.21	-0.2
3,647,618	-		EFB2_03498	0.21	+1.3
3,647,618	-		EFB2_03498	0.21	-2.4
3,647,618	-		EFB2_03498	0.21	+0.1
3,647,618	-		EFB2_03498	0.21	-0.2
3,647,618	-		EFB2_03498	0.21	+0.5
3,647,633	+		EFB2_03498	0.22	+0.3
3,647,634	-		EFB2_03498	0.22	+0.6
3,647,657	-		EFB2_03498	0.24	+1.4
3,647,705	-		EFB2_03498	0.27	+0.6
3,647,705	-		EFB2_03498	0.27	-1.8
3,647,705	-		EFB2_03498	0.27	-0.3
3,647,705	-		EFB2_03498	0.27	-2.6
3,647,705	-		EFB2_03498	0.27	+2.4
3,647,708	-		EFB2_03498	0.27	+1.6
3,647,708	-		EFB2_03498	0.27	+0.1
3,647,708	-		EFB2_03498	0.27	-2.6
3,647,722	+		EFB2_03498	0.28	+0.9
3,647,723	-		EFB2_03498	0.28	+0.1
3,647,793	+		EFB2_03498	0.32	-2.3
3,647,793	+		EFB2_03498	0.32	-1.3
3,647,793	+		EFB2_03498	0.32	-0.6
3,647,793	+		EFB2_03498	0.32	-1.4
3,647,793	+		EFB2_03498	0.32	-2.8
3,647,793	+		EFB2_03498	0.32	-0.6
3,647,793	+		EFB2_03498	0.32	-0.4
3,647,793	+		EFB2_03498	0.32	+0.4
3,647,794	-		EFB2_03498	0.32	+1.4
3,647,794	-		EFB2_03498	0.32	+1.1
3,647,794	-		EFB2_03498	0.32	-1.9
3,647,794	-		EFB2_03498	0.32	-3.0
3,647,794	-		EFB2_03498	0.32	-2.9
3,647,794	-		EFB2_03498	0.32	-1.2
3,647,794	-		EFB2_03498	0.32	+0.6
3,647,794	-		EFB2_03498	0.32	-1.8
3,647,794	-		EFB2_03498	0.32	-3.2
3,647,794	-		EFB2_03498	0.32	+0.3
3,647,794	-		EFB2_03498	0.32	+0.4
3,647,828	+		EFB2_03498	0.34	+0.4
3,647,834	+		EFB2_03498	0.35	-1.8
3,647,834	+		EFB2_03498	0.35	+2.4
3,647,849	+		EFB2_03498	0.36	-0.2
3,647,849	+		EFB2_03498	0.36	+1.1
3,647,849	+		EFB2_03498	0.36	-1.2
3,647,850	-		EFB2_03498	0.36	+1.3
3,647,850	-		EFB2_03498	0.36	+0.8
3,647,850	-		EFB2_03498	0.36	-2.9
3,647,850	-		EFB2_03498	0.36	-3.6
3,647,866	+		EFB2_03498	0.37	-2.8
3,647,866	+		EFB2_03498	0.37	-2.8
3,647,866	+		EFB2_03498	0.37	+4.3
3,647,866	+		EFB2_03498	0.37	+0.2
3,647,866	+		EFB2_03498	0.37	-0.3
3,647,866	+		EFB2_03498	0.37	-3.4
3,647,866	+		EFB2_03498	0.37	+1.2
3,647,867	-		EFB2_03498	0.37	-0.0
3,647,867	-		EFB2_03498	0.37	+1.9
3,647,867	-		EFB2_03498	0.37	+0.4
3,647,867	-		EFB2_03498	0.37	+3.7
3,647,867	-		EFB2_03498	0.37	-2.1
3,647,867	-		EFB2_03498	0.37	+0.8
3,647,867	-		EFB2_03498	0.37	-0.4
3,647,930	+		EFB2_03498	0.41	+0.7
3,647,931	-		EFB2_03498	0.41	-0.4
3,647,973	+		EFB2_03498	0.43	-2.4
3,647,974	-		EFB2_03498	0.43	+1.1
3,648,150	+		EFB2_03498	0.54	+1.2
3,648,150	+		EFB2_03498	0.54	-2.8
3,648,151	-		EFB2_03498	0.54	-0.8
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