Strain Fitness in Escherichia fergusonii Becca around EFB2_03467

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,617,510	+				-0.8
3,617,510	+				+2.0
3,617,510	+				+0.8
3,617,510	+				+1.2
3,617,510	+				+0.9
3,617,510	+				-0.8
3,617,510	+				-0.7
3,617,510	+				-2.9
3,617,510	+				-0.4
3,617,510	+				+0.7
3,617,510	+				+1.4
3,617,510	+				-2.2
3,617,510	+				-0.4
3,617,510	+				-0.3
3,617,510	+				+0.3
3,617,510	+				-2.3
3,617,510	+				+0.4
3,617,511	-				+1.2
3,617,511	-				-1.8
3,617,511	-				+1.0
3,617,511	-				+1.6
3,617,511	-				+0.5
3,617,511	-				-1.7
3,617,511	-				-1.9
3,617,511	-				+1.0
3,617,511	-				+0.2
3,617,511	-				+1.6
3,617,511	-				+0.2
3,617,511	-				-1.6
3,617,511	-				-1.8
3,617,511	-				-0.0
3,617,511	-				-0.4
3,617,511	-				-1.9
3,617,512	+				-0.7
3,617,512	+				+0.7
3,617,512	+				+0.6
3,617,512	+				-1.3
3,617,512	+				+2.9
3,617,513	-				-1.6
3,617,513	-				-0.4
3,617,513	-				-0.8
3,617,548	+				+2.4
3,617,548	+				-2.1
3,617,549	-				-0.7
3,617,549	-				-0.8
3,617,549	-				-1.3
3,617,549	-				-1.2
3,617,549	-				-0.0
3,617,549	-				-2.5
3,617,549	-				+1.6
3,617,551	+				-1.8
3,617,552	-				-0.0
3,617,578	+				-1.7
3,617,579	-				+0.2
3,617,579	-				+1.3
3,617,579	-				-0.2
3,617,579	-				-0.6
3,617,625	+				+2.4
3,617,625	+				+3.3
3,617,625	+				-2.0
3,617,625	+				-2.6
3,617,625	+				-1.9
3,617,625	+				+1.1
3,617,625	+				-0.4
3,617,626	-				-3.8
3,617,626	-				-1.2
3,617,626	-				-2.9
3,617,626	-				+0.3
3,617,626	-				+0.5
3,617,626	-				-1.3
3,617,628	+				-2.5
3,617,628	+				-1.7
3,617,628	+				-1.4
3,617,628	+				-1.5
3,617,628	+				+1.7
3,617,629	-				-1.5
3,617,629	-				+1.1
3,617,629	-				+0.1
3,617,629	-				+0.8
3,617,629	-				+0.6
3,617,629	-				-1.9
3,617,629	-				+1.4
3,617,629	-				-1.9
3,617,658	+				-0.6
3,617,659	-				-1.3
3,617,680	-				-1.4
3,617,680	-				-1.4
3,617,680	-				-1.9
3,617,766	+		EFB2_03466	0.18	-1.7
3,617,766	+		EFB2_03466	0.18	-0.1
3,617,766	+		EFB2_03466	0.18	-2.0
3,617,766	+		EFB2_03466	0.18	-0.1
3,617,766	+		EFB2_03466	0.18	-2.3
3,617,766	+		EFB2_03466	0.18	-2.0
3,617,766	+		EFB2_03466	0.18	-0.6
3,617,766	+		EFB2_03466	0.18	+0.9
3,617,766	+		EFB2_03466	0.18	+0.2
3,617,766	+		EFB2_03466	0.18	-3.0
3,617,766	+		EFB2_03466	0.18	+0.1
3,617,766	+		EFB2_03466	0.18	-2.0
3,617,766	+		EFB2_03466	0.18	-0.9
3,617,766	+		EFB2_03466	0.18	+0.8
3,617,766	+		EFB2_03466	0.18	-2.6
3,617,766	+		EFB2_03466	0.18	-1.5
3,617,767	-		EFB2_03466	0.18	+1.6
3,617,767	-		EFB2_03466	0.18	+0.5
3,617,767	-		EFB2_03466	0.18	+1.8
3,617,767	-		EFB2_03466	0.18	+0.9
3,617,767	-		EFB2_03466	0.18	-1.3
3,617,767	-		EFB2_03466	0.18	-2.0
3,617,767	-		EFB2_03466	0.18	-1.4
3,617,767	-		EFB2_03466	0.18	+3.5
3,617,767	-		EFB2_03466	0.18	-2.9
3,617,767	-		EFB2_03466	0.18	+0.2
3,617,767	-		EFB2_03466	0.18	+0.6
3,617,767	-		EFB2_03466	0.18	+1.1
3,617,767	-		EFB2_03466	0.18	+0.3
3,617,767	-		EFB2_03466	0.18	+2.1
3,617,767	-		EFB2_03466	0.18	-3.3
3,617,767	-		EFB2_03466	0.18	-2.4
3,617,767	-		EFB2_03466	0.18	-1.8
3,617,767	-		EFB2_03466	0.18	-0.6
3,617,767	-		EFB2_03466	0.18	-2.0
3,617,767	-		EFB2_03466	0.18	+2.3
3,617,767	-		EFB2_03466	0.18	-2.6
3,617,767	-		EFB2_03466	0.18	-2.0
3,617,768	+		EFB2_03466	0.19	-2.7
3,617,768	+		EFB2_03466	0.19	+1.2
3,617,769	-		EFB2_03466	0.19	+0.4
3,617,769	-		EFB2_03466	0.19	-0.4
3,617,769	-		EFB2_03466	0.19	-1.0
3,617,787	-		EFB2_03466	0.21	-2.0
3,617,819	+		EFB2_03466	0.25	-0.4
3,617,819	+		EFB2_03466	0.25	-2.9
3,617,819	+		EFB2_03466	0.25	+0.1
3,617,819	+		EFB2_03466	0.25	-1.8
3,617,819	+		EFB2_03466	0.25	+2.4
3,617,819	+		EFB2_03466	0.25	+1.7
3,617,819	+		EFB2_03466	0.25	+2.1
3,617,819	+		EFB2_03466	0.25	-0.9
3,617,819	+		EFB2_03466	0.25	-1.2
3,617,819	+		EFB2_03466	0.25	-1.5
3,617,819	+		EFB2_03466	0.25	-1.8
3,617,819	+		EFB2_03466	0.25	+2.0
3,617,819	+		EFB2_03466	0.25	+0.6
3,617,819	+		EFB2_03466	0.25	-0.6
3,617,819	+		EFB2_03466	0.25	-2.0
3,617,819	+		EFB2_03466	0.25	+0.4
3,617,819	+		EFB2_03466	0.25	-0.6
3,617,819	+		EFB2_03466	0.25	-1.5
3,617,819	+		EFB2_03466	0.25	+1.7
3,617,819	+		EFB2_03466	0.25	-0.1
3,617,819	+		EFB2_03466	0.25	-0.2
3,617,819	+		EFB2_03466	0.25	+1.4
3,617,819	+		EFB2_03466	0.25	-1.7
3,617,820	-		EFB2_03466	0.25	-2.7
3,617,820	-		EFB2_03466	0.25	+0.6
3,617,820	-		EFB2_03466	0.25	-2.0
3,617,820	-		EFB2_03466	0.25	-0.1
3,617,820	-		EFB2_03466	0.25	+1.0
3,617,820	-		EFB2_03466	0.25	-1.8
3,617,820	-		EFB2_03466	0.25	-0.4
3,617,820	-		EFB2_03466	0.25	-1.4
3,617,820	-		EFB2_03466	0.25	+0.0
3,617,820	-		EFB2_03466	0.25	-0.5
3,617,820	-		EFB2_03466	0.25	+0.3
3,617,820	-		EFB2_03466	0.25	+0.7
3,617,820	-		EFB2_03466	0.25	+1.2
3,617,820	-		EFB2_03466	0.25	+1.3
3,617,820	-		EFB2_03466	0.25	-2.3
3,617,820	-		EFB2_03466	0.25	-1.7
3,617,820	-		EFB2_03466	0.25	+0.6
3,617,820	-		EFB2_03466	0.25	-1.3
3,617,820	-		EFB2_03466	0.25	+1.5
3,617,820	-		EFB2_03466	0.25	-0.9
3,617,820	-		EFB2_03466	0.25	+0.5
3,617,820	-		EFB2_03466	0.25	-3.8
3,617,820	-		EFB2_03466	0.25	-1.9
3,617,821	+		EFB2_03466	0.25	-1.3
3,617,821	+		EFB2_03466	0.25	-0.4
3,617,821	+		EFB2_03466	0.25	-0.7
3,617,821	+		EFB2_03466	0.25	-0.2
3,617,821	+		EFB2_03466	0.25	-2.2
3,617,821	+		EFB2_03466	0.25	+1.6
3,617,821	+		EFB2_03466	0.25	+3.4
3,617,821	+		EFB2_03466	0.25	+0.2
3,617,821	+		EFB2_03466	0.25	-2.0
3,617,821	+		EFB2_03466	0.25	+2.2
3,617,821	+		EFB2_03466	0.25	+0.8
3,617,821	+		EFB2_03466	0.25	+1.6
3,617,821	+		EFB2_03466	0.25	-0.4
3,617,821	+		EFB2_03466	0.25	-1.0
3,617,821	+		EFB2_03466	0.25	-2.3
3,617,821	+		EFB2_03466	0.25	-2.6
3,617,821	+		EFB2_03466	0.25	+0.1
3,617,821	+		EFB2_03466	0.25	+4.5
3,617,821	+		EFB2_03466	0.25	-0.8
3,617,821	+		EFB2_03466	0.25	+0.5
3,617,821	+		EFB2_03466	0.25	+0.5
3,617,821	+		EFB2_03466	0.25	-1.3
3,617,821	+		EFB2_03466	0.25	-0.6
3,617,821	+		EFB2_03466	0.25	-1.6
3,617,821	+		EFB2_03466	0.25	-2.9
3,617,821	+		EFB2_03466	0.25	+0.0
3,617,822	-		EFB2_03466	0.25	+1.1
3,617,822	-		EFB2_03466	0.25	-1.8
3,617,822	-		EFB2_03466	0.25	-1.6
3,617,822	-		EFB2_03466	0.25	-1.8
3,617,822	-		EFB2_03466	0.25	+1.1
3,617,822	-		EFB2_03466	0.25	-2.4
3,617,822	-		EFB2_03466	0.25	-3.6
3,617,822	-		EFB2_03466	0.25	+1.0
3,617,822	-		EFB2_03466	0.25	-1.8
3,617,822	-		EFB2_03466	0.25	+1.7
3,617,822	-		EFB2_03466	0.25	+0.4
3,617,822	-		EFB2_03466	0.25	-0.2
3,617,822	-		EFB2_03466	0.25	+0.6
3,617,822	-		EFB2_03466	0.25	-0.3
3,617,822	-		EFB2_03466	0.25	-2.7
3,617,822	-		EFB2_03466	0.25	+2.3
3,617,822	-		EFB2_03466	0.25	+0.1
3,617,822	-		EFB2_03466	0.25	+1.5
3,617,822	-		EFB2_03466	0.25	+1.7
3,617,822	-		EFB2_03466	0.25	-0.6
3,617,907	+		EFB2_03466	0.36	+0.5
3,617,907	+		EFB2_03466	0.36	-2.2
3,617,908	-		EFB2_03466	0.36	+0.2
3,617,908	-		EFB2_03466	0.36	-0.0
3,617,908	-		EFB2_03466	0.36	-2.1
3,617,908	-		EFB2_03466	0.36	-1.2
3,617,908	-		EFB2_03466	0.36	-0.2
3,617,961	+		EFB2_03466	0.43	+1.8
3,617,961	+		EFB2_03466	0.43	-1.8
3,617,961	+		EFB2_03466	0.43	-0.6
3,617,961	+		EFB2_03466	0.43	+1.4
3,617,961	+		EFB2_03466	0.43	-0.4
3,617,962	-		EFB2_03466	0.43	+0.4
3,617,962	-		EFB2_03466	0.43	+1.3
3,617,962	-		EFB2_03466	0.43	-1.3
3,617,962	-		EFB2_03466	0.43	-0.5
3,617,962	-		EFB2_03466	0.43	+1.2
3,617,962	-		EFB2_03466	0.43	+1.9
3,617,969	-		EFB2_03466	0.44	-0.1
3,618,010	-		EFB2_03466	0.49	-2.5
3,618,018	+		EFB2_03466	0.50	-1.3
3,618,018	+		EFB2_03466	0.50	-1.4
3,618,018	+		EFB2_03466	0.50	+0.7
3,618,018	+		EFB2_03466	0.50	+0.9
3,618,018	+		EFB2_03466	0.50	-2.8
3,618,019	-		EFB2_03466	0.50	+2.1
3,618,019	-		EFB2_03466	0.50	+2.6
3,618,019	-		EFB2_03466	0.50	-3.4
3,618,019	-		EFB2_03466	0.50	-0.2
3,618,019	-		EFB2_03466	0.50	+0.3
3,618,070	+		EFB2_03466	0.57	-3.8
3,618,070	+		EFB2_03466	0.57	+1.7
3,618,070	+		EFB2_03466	0.57	+3.1
3,618,070	+		EFB2_03466	0.57	+1.5
3,618,070	+		EFB2_03466	0.57	+2.1
3,618,070	+		EFB2_03466	0.57	-2.8
3,618,070	+		EFB2_03466	0.57	+1.1
3,618,070	+		EFB2_03466	0.57	+2.0
3,618,070	+		EFB2_03466	0.57	-2.3
3,618,070	+		EFB2_03466	0.57	+0.3
3,618,071	-		EFB2_03466	0.57	-0.4
3,618,071	-		EFB2_03466	0.57	-1.2
3,618,071	-		EFB2_03466	0.57	-1.1
3,618,071	-		EFB2_03466	0.57	+1.8
3,618,071	-		EFB2_03466	0.57	+1.7
3,618,071	-		EFB2_03466	0.57	+0.1
3,618,071	-		EFB2_03466	0.57	+0.0
3,618,071	-		EFB2_03466	0.57	+1.8
3,618,115	-		EFB2_03466	0.62	+0.0
3,618,128	+		EFB2_03466	0.64	-2.5
3,618,128	+		EFB2_03466	0.64	-1.2
3,618,128	+		EFB2_03466	0.64	+2.0
3,618,129	-		EFB2_03466	0.64	-0.0
3,618,129	-		EFB2_03466	0.64	-1.5
3,618,129	-		EFB2_03466	0.64	-0.4
3,618,129	-		EFB2_03466	0.64	-0.6
3,618,188	+		EFB2_03466	0.72	+2.2
3,618,188	+		EFB2_03466	0.72	+0.8
3,618,188	+		EFB2_03466	0.72	+1.8
3,618,188	+		EFB2_03466	0.72	-0.4
3,618,188	+		EFB2_03466	0.72	-0.9
3,618,189	-		EFB2_03466	0.72	+0.7
3,618,189	-		EFB2_03466	0.72	-0.9
3,618,189	-		EFB2_03466	0.72	-2.0
3,618,189	-		EFB2_03466	0.72	-2.8
3,618,189	-		EFB2_03466	0.72	-0.8
3,618,195	-		EFB2_03466	0.73	+0.0
3,618,285	+		EFB2_03466	0.84	+0.8
3,618,286	-		EFB2_03466	0.84	-1.6
3,618,286	-		EFB2_03466	0.84	+0.4
3,618,380	+				+1.7
3,618,380	+				-0.8
3,618,380	+				-2.1
3,618,380	+				-1.7
3,618,380	+				-1.9
3,618,380	+				+5.1
3,618,380	+				+0.8
3,618,381	-				-0.2
3,618,381	-				+0.4
3,618,381	-				+0.2
3,618,381	-				-2.1
3,618,381	-				-0.3
3,618,381	-				+0.1
3,618,381	-				-2.2
3,618,432	+				-2.2
3,618,453	-				-1.6
3,618,462	+				-1.0
3,618,468	+				-1.8
3,618,468	+				+0.9
3,618,468	+				+1.4
3,618,469	-				+2.1
3,618,469	-				+0.5
3,618,469	-				-0.8
3,618,469	-				-0.8
3,618,469	-				+0.5
3,618,469	-				-0.8
3,618,469	-				-2.9
3,618,477	+				-0.3
3,618,477	+				-1.4
3,618,477	+				+1.5
3,618,477	+				+1.4
3,618,477	+				-1.8
3,618,477	+				-2.0
3,618,477	+				-3.2
3,618,477	+				+2.1
3,618,477	+				-2.5
3,618,477	+				+1.0
3,618,477	+				-1.4
3,618,478	-				-0.9
3,618,478	-				-2.5
3,618,478	-				-2.5
3,618,478	-				-0.1
3,618,478	-				+2.9
3,618,478	-				-2.3
3,618,478	-				+1.5
3,618,478	-				+0.7
3,618,488	+				-0.1
3,618,488	+				+0.6
3,618,488	+				+1.0
3,618,489	-				-1.3
3,618,489	-				-0.9
3,618,507	+				-2.1
3,618,507	+				+2.1
3,618,507	+				-0.2
3,618,507	+				-0.9
3,618,507	+				-2.5
3,618,508	-				+1.8
3,618,508	-				-0.8
3,618,508	-				+1.2
3,618,508	-				+1.5
3,618,508	-				-0.4
3,618,508	-				-3.1
3,618,519	+				-0.8
3,618,519	+				+0.8
3,618,520	-				+1.4
3,618,567	+		EFB2_03467	0.17	+2.3
3,618,567	+		EFB2_03467	0.17	-1.1
3,618,567	+		EFB2_03467	0.17	+0.7
3,618,568	-		EFB2_03467	0.17	-1.4
3,618,568	-		EFB2_03467	0.17	-3.4
3,618,568	-		EFB2_03467	0.17	+1.8
3,618,568	-		EFB2_03467	0.17	+2.8
3,618,568	-		EFB2_03467	0.17	-2.8
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