Strain Fitness in Escherichia fergusonii Becca around EFB2_03138

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,280,262	+		EFB2_03136	0.79	+1.7
3,280,283	+		EFB2_03136	0.81	+0.8
3,280,283	+		EFB2_03136	0.81	-1.2
3,280,284	-		EFB2_03136	0.81	+0.5
3,280,284	-		EFB2_03136	0.81	-0.7
3,280,304	+		EFB2_03136	0.82	+1.8
3,280,304	+		EFB2_03136	0.82	-0.1
3,280,343	+		EFB2_03136	0.86	+4.0
3,280,344	-		EFB2_03136	0.86	-0.4
3,280,423	+				-0.1
3,280,423	+				-1.8
3,280,423	+				+2.6
3,280,423	+				-1.0
3,280,423	+				-0.1
3,280,423	+				+0.9
3,280,424	-				+1.6
3,280,424	-				+2.5
3,280,425	+				+2.8
3,280,425	+				+0.3
3,280,425	+				+1.5
3,280,425	+				-1.0
3,280,425	+				+1.9
3,280,425	+				+0.1
3,280,425	+				-2.1
3,280,425	+				+0.8
3,280,425	+				+2.7
3,280,426	-				+2.5
3,280,426	-				+2.8
3,280,426	-				+1.5
3,280,426	-				-1.5
3,280,426	-				-1.2
3,280,426	-				+1.6
3,280,426	-				+0.5
3,280,426	-				-0.5
3,280,472	+				+1.5
3,280,472	+				-1.6
3,280,512	+				+2.0
3,280,512	+				+0.6
3,280,512	+				-2.0
3,280,512	+				-1.7
3,280,512	+				-1.1
3,280,513	-				+1.5
3,280,513	-				+0.9
3,280,513	-				-0.7
3,280,513	-				+5.3
3,280,513	-				-0.3
3,280,519	+				-0.1
3,280,600	-				+1.1
3,280,600	-				+0.0
3,280,613	+				-0.7
3,280,647	+		EFB2_03137	0.13	+1.5
3,280,647	+		EFB2_03137	0.13	+0.5
3,280,647	+		EFB2_03137	0.13	+0.1
3,280,647	+		EFB2_03137	0.13	-1.0
3,280,648	-		EFB2_03137	0.13	+2.5
3,280,648	-		EFB2_03137	0.13	+2.1
3,280,648	-		EFB2_03137	0.13	+2.5
3,280,680	+		EFB2_03137	0.18	+0.5
3,280,681	-		EFB2_03137	0.18	-0.3
3,280,681	-		EFB2_03137	0.18	+1.9
3,280,681	-		EFB2_03137	0.18	+0.7
3,280,681	-		EFB2_03137	0.18	-0.5
3,280,707	+		EFB2_03137	0.22	-3.0
3,280,707	+		EFB2_03137	0.22	+0.1
3,280,707	+		EFB2_03137	0.22	+0.1
3,280,708	-		EFB2_03137	0.22	+1.1
3,280,739	-		EFB2_03137	0.27	-0.0
3,280,755	+		EFB2_03137	0.29	+2.2
3,280,816	-		EFB2_03137	0.39	-2.4
3,280,831	+		EFB2_03137	0.41	-0.1
3,280,831	+		EFB2_03137	0.41	-1.7
3,280,832	-		EFB2_03137	0.41	-2.7
3,280,832	-		EFB2_03137	0.41	-0.5
3,280,832	-		EFB2_03137	0.41	-1.9
3,280,832	-		EFB2_03137	0.41	+0.9
3,280,832	-		EFB2_03137	0.41	-3.0
3,280,832	-		EFB2_03137	0.41	-0.0
3,280,832	-		EFB2_03137	0.41	-2.7
3,280,832	-		EFB2_03137	0.41	+1.8
3,280,832	-		EFB2_03137	0.41	+3.1
3,280,832	-		EFB2_03137	0.41	-1.8
3,280,832	-		EFB2_03137	0.41	+0.8
3,280,832	-		EFB2_03137	0.41	-2.1
3,280,832	-		EFB2_03137	0.41	-0.4
3,280,832	-		EFB2_03137	0.41	-1.9
3,280,832	-		EFB2_03137	0.41	-2.3
3,280,832	-		EFB2_03137	0.41	+2.2
3,280,832	-		EFB2_03137	0.41	+0.6
3,280,832	-		EFB2_03137	0.41	+1.0
3,280,832	-		EFB2_03137	0.41	+3.5
3,280,832	-		EFB2_03137	0.41	+2.1
3,280,832	-		EFB2_03137	0.41	-1.5
3,280,832	-		EFB2_03137	0.41	-3.5
3,280,832	-		EFB2_03137	0.41	+1.9
3,280,832	-		EFB2_03137	0.41	+1.1
3,280,832	-		EFB2_03137	0.41	+0.1
3,280,832	-		EFB2_03137	0.41	+1.8
3,280,840	+		EFB2_03137	0.43	-0.1
3,280,841	-		EFB2_03137	0.43	+1.0
3,280,841	-		EFB2_03137	0.43	+0.5
3,280,841	-		EFB2_03137	0.43	+1.1
3,280,926	+		EFB2_03137	0.56	+2.7
3,280,926	+		EFB2_03137	0.56	-0.5
3,280,926	+		EFB2_03137	0.56	+0.7
3,280,926	+		EFB2_03137	0.56	+1.5
3,280,926	+		EFB2_03137	0.56	-1.9
3,280,926	+		EFB2_03137	0.56	-0.7
3,280,927	-		EFB2_03137	0.56	+1.6
3,280,927	-		EFB2_03137	0.56	-2.4
3,280,927	-		EFB2_03137	0.56	-0.4
3,280,927	-		EFB2_03137	0.56	-1.9
3,280,927	-		EFB2_03137	0.56	+0.9
3,280,927	-		EFB2_03137	0.56	+1.2
3,280,927	-		EFB2_03137	0.56	+0.4
3,280,927	-		EFB2_03137	0.56	-2.6
3,280,927	-		EFB2_03137	0.56	+0.4
3,280,927	-		EFB2_03137	0.56	+1.2
3,281,196	+				-0.4
3,281,197	-				-1.1
3,281,197	-				-0.2
3,281,197	-				-0.5
3,281,197	-				-3.2
3,281,199	+				-2.4
3,281,200	-				-1.8
3,281,200	-				+0.3
3,281,200	-				-3.5
3,281,200	-				-0.2
3,281,204	+				-1.2
3,281,204	+				+1.3
3,281,204	+				+1.1
3,281,204	+				-2.5
3,281,205	-				+1.1
3,281,205	-				+0.3
3,281,205	-				-0.4
3,281,205	-				-3.3
3,281,205	-				-3.1
3,281,205	-				-1.1
3,281,205	-				+0.2
3,281,205	-				+2.5
3,281,205	-				-0.4
3,281,211	+				-0.4
3,281,211	+				+3.0
3,281,211	+				+2.7
3,281,212	-				-0.2
3,281,236	+				+4.0
3,281,237	-				-2.6
3,281,237	-				+2.1
3,281,237	-				+0.1
3,281,240	-				-2.4
3,281,240	-				-0.5
3,281,268	-				-2.6
3,281,268	-				-0.1
3,281,268	-				-0.7
3,281,279	+				+6.0
3,281,280	-				-0.8
3,281,280	-				-3.2
3,281,280	-				+2.5
3,281,280	-				+2.9
3,281,280	-				-2.1
3,281,282	+				-2.0
3,281,282	+				+2.7
3,281,282	+				+2.3
3,281,283	-				+1.1
3,281,283	-				-0.0
3,281,283	-				+1.5
3,281,283	-				+0.9
3,281,283	-				+1.5
3,281,283	-				+0.4
3,281,283	-				+0.1
3,281,283	-				+0.3
3,281,283	-				-1.6
3,281,283	-				-1.1
3,281,294	-		EFB2_03138	0.10	+0.2
3,281,298	+		EFB2_03138	0.11	+1.7
3,281,299	-		EFB2_03138	0.11	+0.8
3,281,299	-		EFB2_03138	0.11	+0.9
3,281,299	-		EFB2_03138	0.11	+1.5
3,281,299	-		EFB2_03138	0.11	-1.5
3,281,299	-		EFB2_03138	0.11	+1.1
3,281,299	-		EFB2_03138	0.11	-0.8
3,281,299	-		EFB2_03138	0.11	+0.4
3,281,299	-		EFB2_03138	0.11	-0.9
3,281,299	-		EFB2_03138	0.11	+1.3
3,281,299	-		EFB2_03138	0.11	-1.4
3,281,315	+		EFB2_03138	0.14	+2.0
3,281,315	+		EFB2_03138	0.14	+2.2
3,281,315	+		EFB2_03138	0.14	+0.5
3,281,315	+		EFB2_03138	0.14	-0.9
3,281,316	-		EFB2_03138	0.14	-3.0
3,281,316	-		EFB2_03138	0.14	-0.5
3,281,316	-		EFB2_03138	0.14	+2.2
3,281,316	-		EFB2_03138	0.14	-0.7
3,281,316	-		EFB2_03138	0.14	-2.1
3,281,316	-		EFB2_03138	0.14	+2.1
3,281,316	-		EFB2_03138	0.14	+1.4
3,281,316	-		EFB2_03138	0.14	+1.2
3,281,316	-		EFB2_03138	0.14	+1.4
3,281,316	-		EFB2_03138	0.14	+0.2
3,281,316	-		EFB2_03138	0.14	-0.3
3,281,316	-		EFB2_03138	0.14	+1.0
3,281,320	-		EFB2_03138	0.15	+0.9
3,281,320	-		EFB2_03138	0.15	-2.1
3,281,337	-		EFB2_03138	0.18	+1.5
3,281,337	-		EFB2_03138	0.18	-2.1
3,281,384	+		EFB2_03138	0.27	+1.1
3,281,385	-		EFB2_03138	0.27	-0.5
3,281,392	+		EFB2_03138	0.28	+2.5
3,281,393	-		EFB2_03138	0.28	+0.8
3,281,393	-		EFB2_03138	0.28	-0.7
3,281,393	-		EFB2_03138	0.28	+1.0
3,281,393	-		EFB2_03138	0.28	+0.6
3,281,427	+		EFB2_03138	0.34	+0.9
3,281,428	-		EFB2_03138	0.35	+0.3
3,281,428	-		EFB2_03138	0.35	+1.2
3,281,428	-		EFB2_03138	0.35	+1.7
3,281,428	-		EFB2_03138	0.35	+1.3
3,281,441	+		EFB2_03138	0.37	-0.9
3,281,491	-		EFB2_03138	0.46	-1.6
3,281,491	-		EFB2_03138	0.46	-2.0
3,281,509	+		EFB2_03138	0.49	+1.5
3,281,509	+		EFB2_03138	0.49	-0.3
3,281,510	-		EFB2_03138	0.50	-2.1
3,281,560	+		EFB2_03138	0.59	-1.2
3,281,579	+		EFB2_03138	0.62	-1.5
3,281,603	+		EFB2_03138	0.66	+2.3
3,281,604	-		EFB2_03138	0.67	+1.6
3,281,604	-		EFB2_03138	0.67	+1.7
3,281,604	-		EFB2_03138	0.67	-1.9
3,281,604	-		EFB2_03138	0.67	+0.0
3,281,604	-		EFB2_03138	0.67	+2.3
3,281,604	-		EFB2_03138	0.67	-0.9
3,281,605	+		EFB2_03138	0.67	-1.5
3,281,605	+		EFB2_03138	0.67	+0.9
3,281,605	+		EFB2_03138	0.67	-1.5
3,281,605	+		EFB2_03138	0.67	-1.9
3,281,606	-		EFB2_03138	0.67	-0.1
3,281,606	-		EFB2_03138	0.67	-2.8
3,281,606	-		EFB2_03138	0.67	-0.2
3,281,606	-		EFB2_03138	0.67	-0.1
3,281,606	-		EFB2_03138	0.67	-1.8
3,281,606	-		EFB2_03138	0.67	-1.2
3,281,606	-		EFB2_03138	0.67	+0.5
3,281,649	-		EFB2_03138	0.75	+0.5
3,281,657	+		EFB2_03138	0.76	-0.5
3,281,658	-		EFB2_03138	0.77	+0.7
3,281,658	-		EFB2_03138	0.77	+2.0
3,281,768	+				+0.7
3,281,789	+				-1.5
3,281,789	+				-1.0
3,281,790	-				+0.5
3,281,790	-				+0.8
3,281,800	-				+0.2
3,281,800	-				-1.9
3,281,819	+				-1.0
3,281,819	+				-1.7
3,281,819	+				+3.0
3,281,819	+				+2.5
3,281,820	-				-0.5
3,281,820	-				-2.6
3,281,820	-				+1.2
3,281,820	-				+0.4
3,281,820	-				+0.5
3,281,820	-				-2.0
3,281,820	-				-2.9
3,281,820	-				-1.1
3,281,820	-				-0.5
3,281,821	+				+3.7
3,281,821	+				+1.1
3,281,821	+				-1.6
3,281,821	+				+0.3
3,281,821	+				-2.1
3,281,822	-				-2.1
3,281,822	-				-1.4
3,281,822	-				-3.2
3,281,822	-				+0.6
3,281,822	-				+1.5
3,281,822	-				-0.1
3,281,822	-				-1.7
3,281,822	-				-0.8
3,281,822	-				+1.6
3,281,822	-				-0.0
3,281,822	-				-0.7
3,281,850	+				-2.6
3,281,929	+				-1.8
3,281,930	-				+2.0
3,281,930	-				+1.0
3,281,930	-				+1.0
3,281,930	-				+0.1
3,281,930	-				-0.9
3,281,933	+				+1.7
3,281,934	-				-2.1
3,281,936	+				-1.6
3,281,937	-				-1.5
3,281,969	-				-2.4
3,281,969	-				+1.8
3,281,976	+				-3.2
3,281,976	+				-1.6
3,281,976	+				+0.6
3,281,976	+				+1.5
3,281,976	+				+0.4
3,281,976	+				+1.8
3,281,977	-				+0.5
3,281,977	-				-0.1
3,281,977	-				-3.0
3,281,977	-				+1.1
3,281,977	-				+1.2
3,282,028	+				+2.5
3,282,028	+				-1.9
3,282,029	-				-0.4
3,282,029	-				+1.5
3,282,029	-				-0.2
3,282,029	-				+0.1
3,282,029	-				+1.4
3,282,029	-				+0.1
3,282,029	-				-0.4
3,282,029	-				-1.6
3,282,034	+				+2.0
3,282,034	+				-2.0
3,282,034	+				-0.1
3,282,034	+				-0.9
3,282,034	+				-2.5
3,282,034	+				+1.7
3,282,035	-				+2.0
3,282,035	-				-3.2
3,282,035	-				+1.1
3,282,038	+				+0.9
3,282,038	+				+1.1
3,282,038	+				-2.1
3,282,038	+				+1.7
3,282,038	+				-0.8
3,282,038	+				+1.2
3,282,039	-				+0.1
3,282,039	-				+2.9
3,282,039	-				+0.5
3,282,044	+				+1.9
3,282,044	+				-0.3
3,282,044	+				-1.6
3,282,045	-				+0.1
3,282,045	-				+0.1
3,282,045	-				-1.5
3,282,045	-				+1.5
3,282,056	+				-0.8
3,282,088	+				-0.3
3,282,088	+				+0.7
3,282,088	+				-1.7
3,282,088	+				+0.6
3,282,088	+				-1.9
3,282,088	+				-0.7
3,282,088	+				-0.7
3,282,088	+				+2.6
3,282,088	+				+1.9
3,282,089	-				-1.0
3,282,089	-				-2.8
3,282,089	-				-1.5
3,282,089	-				+0.1
3,282,089	-				+0.8
3,282,089	-				+0.2
3,282,089	-				-2.9
3,282,091	+				-2.5
3,282,091	+				-1.2
3,282,091	+				-2.8
3,282,092	-				-0.3
3,282,119	+				+0.9
3,282,127	+				+1.0
3,282,127	+				-2.4
3,282,127	+				+0.5
3,282,128	-				-0.5
3,282,128	-				-3.3
3,282,128	-				+1.3
3,282,161	+		EFB2_03139	0.10	+4.8
3,282,161	+		EFB2_03139	0.10	+0.1
3,282,161	+		EFB2_03139	0.10	+1.0
3,282,161	+		EFB2_03139	0.10	-1.1
3,282,161	+		EFB2_03139	0.10	+0.8
3,282,161	+		EFB2_03139	0.10	+1.0
3,282,161	+		EFB2_03139	0.10	+0.9
3,282,161	+		EFB2_03139	0.10	+2.5
3,282,161	+		EFB2_03139	0.10	-0.7
3,282,161	+		EFB2_03139	0.10	+0.5
3,282,161	+		EFB2_03139	0.10	-1.7
3,282,161	+		EFB2_03139	0.10	-1.9
3,282,161	+		EFB2_03139	0.10	+1.0
3,282,162	-		EFB2_03139	0.11	-1.1
3,282,162	-		EFB2_03139	0.11	+0.9
3,282,162	-		EFB2_03139	0.11	-1.5
3,282,162	-		EFB2_03139	0.11	+0.2
3,282,162	-		EFB2_03139	0.11	-1.4
3,282,162	-		EFB2_03139	0.11	-3.1
3,282,197	+		EFB2_03139	0.12	-0.5
3,282,197	+		EFB2_03139	0.12	+1.1
3,282,197	+		EFB2_03139	0.12	+0.4
3,282,197	+		EFB2_03139	0.12	-1.0
3,282,197	+		EFB2_03139	0.12	+0.9
3,282,197	+		EFB2_03139	0.12	-2.5
3,282,198	-		EFB2_03139	0.12	+2.7
3,282,198	-		EFB2_03139	0.12	-0.6
3,282,218	+		EFB2_03139	0.14	+0.9
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