Strain Fitness in Escherichia fergusonii Becca around EFB2_03119

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,256,131	+				+1.9
3,256,131	+				-1.1
3,256,131	+				-2.0
3,256,131	+				+0.6
3,256,131	+				-0.1
3,256,131	+				-0.2
3,256,131	+				+1.4
3,256,131	+				-1.5
3,256,131	+				-1.2
3,256,131	+				+0.1
3,256,131	+				+2.1
3,256,131	+				-0.0
3,256,131	+				-1.2
3,256,131	+				+1.0
3,256,131	+				+1.9
3,256,131	+				-0.1
3,256,131	+				+1.4
3,256,131	+				-0.4
3,256,131	+				-3.9
3,256,131	+				-2.0
3,256,131	+				-1.1
3,256,132	-				-0.4
3,256,132	-				+0.9
3,256,132	-				+0.9
3,256,132	-				-0.3
3,256,132	-				-1.2
3,256,132	-				-0.4
3,256,133	+				+1.3
3,256,133	+				+0.2
3,256,133	+				+1.3
3,256,133	+				+0.7
3,256,133	+				-0.4
3,256,133	+				-0.5
3,256,133	+				-2.5
3,256,133	+				-0.7
3,256,133	+				-0.2
3,256,133	+				+0.9
3,256,133	+				-0.4
3,256,133	+				+1.5
3,256,133	+				-2.4
3,256,133	+				-0.2
3,256,133	+				-0.4
3,256,133	+				-1.6
3,256,133	+				+1.5
3,256,133	+				-2.7
3,256,133	+				+0.2
3,256,133	+				+0.2
3,256,133	+				+3.0
3,256,133	+				+1.1
3,256,133	+				+0.1
3,256,133	+				-0.5
3,256,133	+				+0.8
3,256,133	+				-1.9
3,256,133	+				+0.7
3,256,133	+				+1.0
3,256,133	+				-0.6
3,256,133	+				+0.8
3,256,133	+				-3.0
3,256,134	-				-1.0
3,256,134	-				-0.4
3,256,135	+				+2.3
3,256,135	+				-1.1
3,256,135	+				+0.7
3,256,135	+				+1.4
3,256,135	+				+1.6
3,256,135	+				+1.5
3,256,135	+				+0.4
3,256,135	+				-0.4
3,256,135	+				-1.0
3,256,135	+				+1.2
3,256,135	+				-0.5
3,256,135	+				-2.9
3,256,135	+				-1.0
3,256,135	+				-1.4
3,256,135	+				+2.3
3,256,136	-				-0.7
3,256,136	-				+0.7
3,256,136	-				-0.5
3,256,172	-				+1.7
3,256,172	-				+0.9
3,256,172	-				-2.4
3,256,193	+				+1.9
3,256,193	+				-1.2
3,256,193	+				+1.5
3,256,193	+				-2.4
3,256,193	+				+1.2
3,256,194	-				+1.7
3,256,194	-				-1.5
3,256,194	-				-2.4
3,256,194	-				-0.9
3,256,194	-				-0.5
3,256,194	-				+1.2
3,256,194	-				+1.2
3,256,194	-				-2.2
3,256,194	-				-0.9
3,256,196	+				-1.9
3,256,196	+				+1.3
3,256,196	+				+2.3
3,256,196	+				-1.8
3,256,197	-				-0.4
3,256,197	-				+2.3
3,256,367	+				+0.1
3,256,368	-				+0.3
3,256,402	+				+2.6
3,256,403	-				-0.5
3,256,403	-				-1.6
3,256,406	+				-2.1
3,256,407	-				+1.1
3,256,407	-				+1.5
3,256,407	-				+0.1
3,256,476	+				-1.4
3,256,477	-				+0.8
3,256,487	+				-1.5
3,256,488	-				-0.9
3,256,488	-				+1.9
3,256,544	+				-0.4
3,256,545	-				-2.1
3,256,573	+				-1.0
3,256,588	+				-2.3
3,256,589	-				+1.4
3,256,592	+				-0.5
3,256,609	-				+1.0
3,256,609	-				-2.6
3,256,613	+				+3.5
3,256,613	+				-2.1
3,256,614	-				-1.5
3,256,614	-				+0.6
3,256,614	-				+2.5
3,256,622	+				+4.5
3,256,623	-				-0.9
3,256,636	+				-1.8
3,256,636	+				-0.1
3,256,636	+				-0.4
3,256,636	+				+0.9
3,256,637	-				-2.6
3,256,637	-				-0.7
3,256,637	-				+1.4
3,256,676	-		EFB2_03119	0.12	+0.0
3,256,690	-		EFB2_03119	0.15	-1.6
3,256,875	-		EFB2_03119	0.48	+0.0
3,256,875	-		EFB2_03119	0.48	+1.1
3,256,875	-		EFB2_03119	0.48	-1.5
3,256,875	-		EFB2_03119	0.48	+1.1
3,256,959	+		EFB2_03119	0.62	+0.9
3,256,959	+		EFB2_03119	0.62	-2.6
3,256,959	+		EFB2_03119	0.62	+0.3
3,256,959	+		EFB2_03119	0.62	-0.7
3,256,959	+		EFB2_03119	0.62	+1.5
3,256,960	-		EFB2_03119	0.63	+0.0
3,256,960	-		EFB2_03119	0.63	-2.5
3,256,960	-		EFB2_03119	0.63	-2.8
3,256,960	-		EFB2_03119	0.63	+0.9
3,256,960	-		EFB2_03119	0.63	-1.5
3,256,960	-		EFB2_03119	0.63	-0.4
3,256,960	-		EFB2_03119	0.63	-0.8
3,256,960	-		EFB2_03119	0.63	-1.9
3,256,960	-		EFB2_03119	0.63	+1.4
3,256,960	-		EFB2_03119	0.63	-0.2
3,256,960	-		EFB2_03119	0.63	-0.0
3,256,960	-		EFB2_03119	0.63	-0.2
3,257,033	+		EFB2_03119	0.76	-1.0
3,257,034	-		EFB2_03119	0.76	-1.0
3,257,044	+		EFB2_03119	0.77	+0.9
3,257,069	-		EFB2_03119	0.82	-0.5
3,257,087	+		EFB2_03119	0.85	-0.9
3,257,087	+		EFB2_03119	0.85	+0.5
3,257,088	-		EFB2_03119	0.85	+0.5
3,257,088	-		EFB2_03119	0.85	+1.4
3,257,088	-		EFB2_03119	0.85	+1.5
3,257,088	-		EFB2_03119	0.85	+0.6
3,257,088	-		EFB2_03119	0.85	+3.0
3,257,088	-		EFB2_03119	0.85	-0.7
3,257,095	-		EFB2_03119	0.87	+0.2
3,257,098	-		EFB2_03119	0.87	+0.5
3,257,098	-		EFB2_03119	0.87	-0.5
3,257,098	-		EFB2_03119	0.87	+0.6
3,257,219	-				+0.2
3,257,315	+				-1.6
3,257,315	+				+0.1
3,257,315	+				-1.2
3,257,316	-				+0.7
3,257,316	-				+0.2
3,257,316	-				-2.5
3,257,316	-				+0.8
3,257,316	-				+1.2
3,257,316	-				+0.8
3,257,316	-				-0.9
3,257,380	-		EFB2_03120	0.13	+0.6
3,257,380	-		EFB2_03120	0.13	+1.3
3,257,482	-		EFB2_03120	0.19	+0.1
3,257,482	-		EFB2_03120	0.19	+0.6
3,257,482	-		EFB2_03120	0.19	-1.0
3,257,530	-		EFB2_03120	0.22	+1.6
3,257,605	-		EFB2_03120	0.27	-0.8
3,257,605	-		EFB2_03120	0.27	+1.2
3,257,634	+		EFB2_03120	0.28	-3.6
3,257,634	+		EFB2_03120	0.28	+0.7
3,257,635	-		EFB2_03120	0.29	-1.4
3,257,635	-		EFB2_03120	0.29	+0.0
3,257,635	-		EFB2_03120	0.29	+0.5
3,257,643	-		EFB2_03120	0.29	-0.2
3,257,660	+		EFB2_03120	0.30	-1.0
3,257,660	+		EFB2_03120	0.30	+0.9
3,257,660	+		EFB2_03120	0.30	-0.5
3,257,660	+		EFB2_03120	0.30	+2.5
3,257,660	+		EFB2_03120	0.30	-1.4
3,257,660	+		EFB2_03120	0.30	-1.0
3,257,661	-		EFB2_03120	0.30	-0.4
3,257,661	-		EFB2_03120	0.30	+0.5
3,257,661	-		EFB2_03120	0.30	-0.1
3,257,661	-		EFB2_03120	0.30	-2.3
3,257,661	-		EFB2_03120	0.30	+1.1
3,257,661	-		EFB2_03120	0.30	-1.4
3,257,661	-		EFB2_03120	0.30	+1.6
3,257,661	-		EFB2_03120	0.30	-2.6
3,257,661	-		EFB2_03120	0.30	-1.5
3,257,661	-		EFB2_03120	0.30	-0.6
3,257,661	-		EFB2_03120	0.30	-0.0
3,257,661	-		EFB2_03120	0.30	+0.0
3,257,661	-		EFB2_03120	0.30	-0.0
3,257,661	-		EFB2_03120	0.30	+0.3
3,257,661	-		EFB2_03120	0.30	+0.9
3,257,661	-		EFB2_03120	0.30	-0.1
3,257,661	-		EFB2_03120	0.30	+1.2
3,257,661	-		EFB2_03120	0.30	-0.4
3,257,788	-		EFB2_03120	0.38	-1.2
3,257,806	-		EFB2_03120	0.39	+1.8
3,257,810	+		EFB2_03120	0.39	+0.5
3,257,820	+		EFB2_03120	0.40	-0.1
3,257,820	+		EFB2_03120	0.40	-1.5
3,257,821	-		EFB2_03120	0.40	-1.8
3,257,821	-		EFB2_03120	0.40	-2.5
3,257,821	-		EFB2_03120	0.40	-1.5
3,257,836	-		EFB2_03120	0.41	+1.4
3,257,836	-		EFB2_03120	0.41	-0.7
3,257,836	-		EFB2_03120	0.41	-0.0
3,257,864	-		EFB2_03120	0.42	+0.6
3,257,945	+		EFB2_03120	0.47	-1.0
3,257,946	-		EFB2_03120	0.47	-0.7
3,257,946	-		EFB2_03120	0.47	+1.1
3,257,964	-		EFB2_03120	0.49	-0.1
3,258,035	-		EFB2_03120	0.53	+2.0
3,258,076	-		EFB2_03120	0.55	+0.2
3,258,144	+		EFB2_03120	0.60	+0.1
3,258,144	+		EFB2_03120	0.60	-2.2
3,258,144	+		EFB2_03120	0.60	-1.9
3,258,145	-		EFB2_03120	0.60	+0.0
3,258,145	-		EFB2_03120	0.60	-1.5