Strain Fitness in Escherichia fergusonii Becca around EFB2_03018

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,143,618	+		EFB2_03014	0.59	-0.5
3,143,618	+		EFB2_03014	0.59	+0.8
3,143,618	+		EFB2_03014	0.59	+0.6
3,143,619	-		EFB2_03014	0.60	-0.1
3,143,619	-		EFB2_03014	0.60	+1.3
3,143,619	-		EFB2_03014	0.60	-1.1
3,143,620	+		EFB2_03014	0.60	-0.4
3,143,620	+		EFB2_03014	0.60	-1.2
3,143,621	-		EFB2_03014	0.61	-2.7
3,143,621	-		EFB2_03014	0.61	+1.0
3,143,621	-		EFB2_03014	0.61	+0.4
3,143,621	-		EFB2_03014	0.61	-1.6
3,143,621	-		EFB2_03014	0.61	+2.8
3,143,653	+		EFB2_03014	0.74	-1.3
3,143,654	-		EFB2_03014	0.75	-2.2
3,143,654	-		EFB2_03014	0.75	-0.3
3,143,654	-		EFB2_03014	0.75	+0.7
3,143,660	+		EFB2_03014	0.77	+0.2
3,143,660	+		EFB2_03014	0.77	+2.3
3,143,661	-		EFB2_03014	0.78	-0.7
3,143,661	-		EFB2_03014	0.78	+0.4
3,143,661	-		EFB2_03014	0.78	-0.7
3,143,661	-		EFB2_03014	0.78	+0.9
3,143,673	+		EFB2_03014	0.83	+0.9
3,143,673	+		EFB2_03014	0.83	-2.7
3,143,673	+		EFB2_03014	0.83	+1.5
3,143,673	+		EFB2_03014	0.83	-0.8
3,143,673	+		EFB2_03014	0.83	-1.9
3,143,683	+				-1.4
3,143,683	+				+1.1
3,143,683	+				-0.4
3,143,683	+				-2.4
3,143,683	+				-1.8
3,143,683	+				-0.8
3,143,684	-				-0.5
3,143,684	-				-0.8
3,143,684	-				-0.8
3,143,684	-				+3.5
3,143,684	-				-3.4
3,143,684	-				-0.4
3,143,684	-				-0.1
3,143,716	+				+2.5
3,143,717	-				+0.2
3,143,748	+		EFB2_03015	0.17	+1.9
3,143,748	+		EFB2_03015	0.17	-0.5
3,143,748	+		EFB2_03015	0.17	+1.8
3,143,748	+		EFB2_03015	0.17	+0.9
3,143,748	+		EFB2_03015	0.17	-3.0
3,143,748	+		EFB2_03015	0.17	-1.5
3,143,748	+		EFB2_03015	0.17	+0.8
3,143,749	-		EFB2_03015	0.17	-1.0
3,143,749	-		EFB2_03015	0.17	-0.8
3,143,749	-		EFB2_03015	0.17	-0.7
3,143,749	-		EFB2_03015	0.17	-2.8
3,143,824	+		EFB2_03015	0.36	-0.1
3,143,824	+		EFB2_03015	0.36	-0.0
3,143,824	+		EFB2_03015	0.36	-0.7
3,143,825	-		EFB2_03015	0.36	+0.5
3,143,825	-		EFB2_03015	0.36	+1.3
3,143,837	-		EFB2_03015	0.39	-1.5
3,143,837	-		EFB2_03015	0.39	-0.1
3,143,846	+		EFB2_03015	0.41	-2.5
3,143,847	-		EFB2_03015	0.42	+1.6
3,143,847	-		EFB2_03015	0.42	-1.3
3,143,847	-		EFB2_03015	0.42	+0.8
3,143,847	-		EFB2_03015	0.42	-1.5
3,143,847	-		EFB2_03015	0.42	+2.5
3,143,848	+		EFB2_03015	0.42	+1.0
3,143,848	+		EFB2_03015	0.42	-0.1
3,143,848	+		EFB2_03015	0.42	-2.6
3,143,849	-		EFB2_03015	0.42	+2.6
3,143,849	-		EFB2_03015	0.42	+1.2
3,143,849	-		EFB2_03015	0.42	-0.5
3,143,849	-		EFB2_03015	0.42	-0.0
3,143,849	-		EFB2_03015	0.42	-1.8
3,143,849	-		EFB2_03015	0.42	-0.3
3,143,849	-		EFB2_03015	0.42	-1.2
3,143,883	-		EFB2_03015	0.51	+2.5
3,143,900	+		EFB2_03015	0.55	+2.4
3,143,925	-		EFB2_03015	0.61	-1.3
3,143,925	-		EFB2_03015	0.61	+2.1
3,143,931	-		EFB2_03015	0.63	-0.1
3,143,931	-		EFB2_03015	0.63	+1.9
3,143,966	+		EFB2_03015	0.72	+0.5
3,143,967	-		EFB2_03015	0.72	-1.3
3,143,989	+		EFB2_03015	0.78	+0.5
3,143,990	-		EFB2_03015	0.78	+3.2
3,143,990	-		EFB2_03015	0.78	+1.1
3,143,990	-		EFB2_03015	0.78	+1.6
3,143,990	-		EFB2_03015	0.78	+0.9
3,143,990	-		EFB2_03015	0.78	-0.8
3,144,027	-		EFB2_03015	0.87	+0.7
3,144,051	+				+0.9
3,144,085	+				-1.7
3,144,086	-				-1.4
3,144,086	-				+0.4
3,144,086	-				+0.2
3,144,089	+				-0.1
3,144,089	+				-1.5
3,144,089	+				+1.2
3,144,090	-				-1.8
3,144,090	-				-0.1
3,144,090	-				-0.6
3,144,090	-				-1.2
3,144,100	-				-0.1
3,144,123	-				-2.2
3,144,123	-				-0.1
3,144,123	-				-3.0
3,144,125	-				-1.5
3,144,125	-				-0.1
3,144,146	-				+0.2
3,144,149	-				+1.4
3,144,149	-				-0.2
3,144,149	-				-0.3
3,144,184	+		EFB2_03016	0.19	-1.0
3,144,185	-		EFB2_03016	0.20	+0.2
3,144,241	-		EFB2_03016	0.46	+1.1
3,144,241	-		EFB2_03016	0.46	-1.1
3,144,250	-		EFB2_03016	0.50	+0.8
3,144,254	+		EFB2_03016	0.52	+0.5
3,144,255	-		EFB2_03016	0.53	-1.8
3,144,258	+		EFB2_03016	0.54	-1.2
3,144,258	+		EFB2_03016	0.54	-0.6
3,144,295	-		EFB2_03016	0.72	-1.5
3,144,295	-		EFB2_03016	0.72	+1.3
3,144,312	+		EFB2_03016	0.80	-1.8
3,144,313	-		EFB2_03016	0.80	+0.0
3,144,315	-		EFB2_03016	0.81	+0.2
3,144,315	-		EFB2_03016	0.81	-0.5
3,144,318	-		EFB2_03016	0.83	-2.0
3,144,324	-		EFB2_03016	0.86	-3.9
3,144,377	-		EFB2_03017	0.14	+0.3
3,144,377	-		EFB2_03017	0.14	+0.1
3,144,395	+		EFB2_03017	0.23	-1.2
3,144,396	-		EFB2_03017	0.24	+1.4
3,144,409	+		EFB2_03017	0.31	-2.1
3,144,410	-		EFB2_03017	0.31	+1.4
3,144,422	-		EFB2_03017	0.38	+0.7
3,144,442	+		EFB2_03017	0.48	+0.9
3,144,443	-		EFB2_03017	0.48	+1.0
3,144,501	-		EFB2_03017	0.79	+1.2
3,144,516	+		EFB2_03017	0.86	-1.4
3,144,516	+		EFB2_03017	0.86	-0.3
3,144,517	-		EFB2_03017	0.87	-1.0
3,144,520	+		EFB2_03017	0.89	+2.6
3,144,520	+		EFB2_03017	0.89	+1.3
3,144,520	+		EFB2_03017	0.89	+0.2
3,144,520	+		EFB2_03017	0.89	-1.3
3,144,521	-		EFB2_03017	0.89	+2.1
3,144,521	-		EFB2_03017	0.89	-0.1
3,144,551	+				+0.7
3,144,568	+				+0.5
3,144,568	+				+2.2
3,144,569	-				-1.4
3,144,580	-				-2.5
3,144,580	-				-2.0
3,144,583	+				+1.1
3,144,583	+				+0.2
3,144,583	+				-0.8
3,144,583	+				-1.1
3,144,583	+				-2.9
3,144,584	-				+1.1
3,144,584	-				-1.8
3,144,584	-				+0.6
3,144,584	-				+2.3
3,144,584	-				+1.9
3,144,586	+				+0.5
3,144,586	+				+1.2
3,144,586	+				+2.4
3,144,587	-				-0.3
3,144,587	-				-0.4
3,144,587	-				-0.2
3,144,587	-				+0.0
3,144,587	-				-2.2
3,144,598	+				-1.3
3,144,671	-		EFB2_03018	0.25	+0.9
3,144,773	+		EFB2_03018	0.52	+2.0
3,144,773	+		EFB2_03018	0.52	+2.7
3,144,773	+		EFB2_03018	0.52	+0.9
3,144,773	+		EFB2_03018	0.52	+1.8
3,144,773	+		EFB2_03018	0.52	+0.2
3,144,774	-		EFB2_03018	0.52	-1.1
3,144,774	-		EFB2_03018	0.52	+0.3
3,144,774	-		EFB2_03018	0.52	+2.2
3,144,774	-		EFB2_03018	0.52	-1.0
3,144,774	-		EFB2_03018	0.52	+1.1
3,144,774	-		EFB2_03018	0.52	+1.2
3,144,774	-		EFB2_03018	0.52	-0.1
3,144,778	+		EFB2_03018	0.53	-0.4
3,144,778	+		EFB2_03018	0.53	-2.1
3,144,778	+		EFB2_03018	0.53	-1.7
3,144,779	-		EFB2_03018	0.53	-0.7
3,144,779	-		EFB2_03018	0.53	-0.7
3,144,779	-		EFB2_03018	0.53	+3.8
3,144,779	-		EFB2_03018	0.53	+1.4
3,144,779	-		EFB2_03018	0.53	+1.9
3,144,779	-		EFB2_03018	0.53	+0.9
3,144,779	-		EFB2_03018	0.53	+1.7
3,144,792	+		EFB2_03018	0.57	+0.5
3,144,792	+		EFB2_03018	0.57	+3.5
3,144,792	+		EFB2_03018	0.57	-0.7
3,144,793	-		EFB2_03018	0.57	+0.4
3,144,793	-		EFB2_03018	0.57	-2.0
3,144,793	-		EFB2_03018	0.57	+0.2
3,144,800	-		EFB2_03018	0.59	+0.7
3,144,833	+		EFB2_03018	0.67	-1.9
3,144,833	+		EFB2_03018	0.67	-1.7
3,144,834	-		EFB2_03018	0.68	-0.4
3,144,854	+		EFB2_03018	0.73	+0.5
3,144,854	+		EFB2_03018	0.73	+4.6
3,144,855	-		EFB2_03018	0.73	+0.7
3,144,855	-		EFB2_03018	0.73	-0.5
3,144,865	+		EFB2_03018	0.76	-2.3
3,144,866	-		EFB2_03018	0.76	-0.6
3,144,866	-		EFB2_03018	0.76	+0.6
3,144,866	-		EFB2_03018	0.76	+0.1
3,144,866	-		EFB2_03018	0.76	-0.9
3,144,866	-		EFB2_03018	0.76	+0.4
3,144,866	-		EFB2_03018	0.76	+0.7
3,144,866	-		EFB2_03018	0.76	+1.9
3,144,866	-		EFB2_03018	0.76	+0.3
3,144,866	-		EFB2_03018	0.76	+2.1
3,144,866	-		EFB2_03018	0.76	+1.2
3,144,888	-		EFB2_03018	0.82	-0.1
3,144,943	+				-0.5
3,144,943	+				-0.9
3,144,943	+				+0.6
3,144,943	+				-0.4
3,144,943	+				+1.5
3,144,943	+				+1.8
3,144,943	+				+1.7
3,144,943	+				-1.5
3,144,944	-				+1.2
3,144,944	-				-0.1
3,144,944	-				-0.1
3,144,944	-				+0.7
3,144,944	-				-2.2
3,144,944	-				-0.3
3,144,944	-				-1.3
3,144,944	-				+1.7
3,144,944	-				+0.1
3,144,944	-				-1.6
3,144,944	-				-2.2
3,144,994	-				-2.7
3,145,001	-				-1.9
3,145,016	-				-1.2
3,145,050	-				-2.2
3,145,642	-				+2.5
3,145,649	-				+1.5
3,145,728	+				+1.9
3,145,728	+				+2.3
3,145,728	+				-2.3
3,145,728	+				+1.1
3,145,728	+				-1.1
3,145,728	+				+0.5
3,145,728	+				+1.9
3,145,728	+				+2.5
3,145,728	+				+2.1
3,145,728	+				+2.5
3,145,728	+				-2.2
3,145,728	+				-2.0
3,145,728	+				-1.0
3,145,728	+				-0.3
3,145,728	+				-3.5
3,145,728	+				-1.8
3,145,728	+				+0.0
3,145,728	+				-0.3
3,145,729	-				-3.0
3,145,729	-				+1.2
3,145,729	-				-1.3
3,145,729	-				+0.2
3,145,729	-				-1.6
3,145,729	-				+0.2
3,145,729	-				+2.7
3,145,729	-				-0.8
3,145,729	-				-2.5
3,145,729	-				+1.4
3,145,729	-				+1.5
3,145,730	+				-1.0
3,145,730	+				-0.1
3,145,731	-				-3.2
3,145,731	-				-1.8
3,145,731	-				+2.7
3,145,731	-				+2.0
3,145,731	-				-0.7
3,145,733	+				-0.1
3,145,733	+				-0.3
3,145,734	-				+0.5
3,145,734	-				+1.2
3,145,735	+				-2.8
3,145,735	+				+0.8
3,145,735	+				-0.4
3,145,735	+				+1.8
3,145,735	+				-2.3
3,145,735	+				-2.6
3,145,735	+				+0.8
3,145,736	-				-2.6
3,145,736	-				-0.3
3,145,740	-				-0.3
3,145,761	-				-0.3
3,145,761	-				+1.1
3,145,761	-				-2.0
3,145,773	+				+1.1
3,145,773	+				-1.5
3,145,773	+				-0.5
3,145,773	+				-0.3
3,145,773	+				+0.2
3,145,773	+				-1.0
3,145,773	+				+2.1
3,145,773	+				+0.5
3,145,773	+				-0.6
3,145,773	+				+1.5
3,145,773	+				+1.1
3,145,774	-				-1.2
3,145,774	-				-2.2
3,145,774	-				-0.7
3,145,775	+				+0.9
3,145,775	+				+0.2
3,145,775	+				+0.3
3,145,776	-				-1.4
3,145,790	+				+1.9
3,145,790	+				+0.4
3,145,791	-				-0.4
3,145,791	-				-0.5
3,145,791	-				+2.1
3,145,791	-				-1.7
3,145,791	-				+0.1
3,145,791	-				+0.9
3,145,791	-				-1.4
3,145,792	+				+1.3
3,145,808	+				+0.3
3,145,808	+				+1.7
3,145,808	+				+0.8
3,145,809	-				-1.0
3,145,809	-				+1.3
3,145,809	-				+1.5
3,145,809	-				+1.6
3,145,809	-				+1.1
3,145,839	+				+1.6
3,145,839	+				-0.1
3,145,840	-				-1.5
3,145,840	-				+2.0
3,145,840	-				+0.9
3,145,840	-				-0.0
3,145,840	-				+1.4
3,145,840	-				+0.5
3,145,840	-				+2.1
3,145,844	+				+1.0
3,145,844	+				-2.0
3,145,844	+				+1.6
3,145,844	+				-2.2
3,145,844	+				+1.5
3,145,844	+				+0.5
3,145,844	+				-2.3
3,145,844	+				+0.3
3,145,844	+				+2.5
3,145,844	+				-1.4
3,145,844	+				-2.0
3,145,844	+				+1.4
3,145,844	+				-0.2
3,145,844	+				+1.7
3,145,844	+				-2.5
3,145,844	+				+2.5
3,145,844	+				-1.1
3,145,844	+				+0.5
3,145,844	+				+3.6
3,145,844	+				+1.5
3,145,844	+				+3.5
3,145,844	+				-2.1
3,145,844	+				-0.3
3,145,844	+				+1.2
3,145,844	+				+1.9
3,145,844	+				+1.0
3,145,844	+				+1.8
3,145,845	-				+1.6
3,145,845	-				-0.3
3,145,845	-				-1.4
3,145,845	-				-1.7
3,145,845	-				+3.5
3,145,845	-				+0.2
3,145,845	-				-1.9
3,145,845	-				+2.9
3,145,845	-				-1.6
3,145,845	-				-1.3
3,145,845	-				-1.0
3,145,845	-				+1.0
3,145,845	-				-0.8
3,145,845	-				-0.4
3,145,845	-				-2.3
3,145,845	-				+0.7
3,145,845	-				-1.3
3,145,845	-				-1.1
3,145,845	-				+1.5
3,145,845	-				-0.8
3,145,845	-				-1.3
3,145,845	-				-0.8
3,145,845	-				-0.8
3,145,845	-				+1.5
3,145,846	+				-2.1
3,145,846	+				-3.4
3,145,846	+				+2.0
3,145,846	+				+0.8
3,145,846	+				-2.6
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