Strain Fitness in Escherichia fergusonii Becca around EFB2_02815

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,960,956	-		EFB2_02813	0.18	+0.1
2,960,962	+		EFB2_02813	0.20	-2.5
2,960,962	+		EFB2_02813	0.20	-0.8
2,960,971	+		EFB2_02813	0.23	+3.6
2,961,002	-		EFB2_02813	0.32	-0.9
2,961,010	+		EFB2_02813	0.34	-1.6
2,961,010	+		EFB2_02813	0.34	+0.7
2,961,010	+		EFB2_02813	0.34	-0.5
2,961,011	-		EFB2_02813	0.35	-0.3
2,961,011	-		EFB2_02813	0.35	+0.7
2,961,068	+		EFB2_02813	0.51	-1.4
2,961,103	-		EFB2_02813	0.61	-2.1
2,961,117	-		EFB2_02813	0.65	-0.3
2,961,119	+		EFB2_02813	0.66	-0.9
2,961,120	-		EFB2_02813	0.66	-0.3
2,961,135	+		EFB2_02813	0.71	-0.3
2,961,135	+		EFB2_02813	0.71	-1.1
2,961,135	+		EFB2_02813	0.71	-0.3
2,961,135	+		EFB2_02813	0.71	-0.1
2,961,135	+		EFB2_02813	0.71	-2.7
2,961,135	+		EFB2_02813	0.71	+0.3
2,961,136	-		EFB2_02813	0.71	+3.3
2,961,156	+		EFB2_02813	0.77	-2.3
2,961,156	+		EFB2_02813	0.77	-0.5
2,961,157	-		EFB2_02813	0.77	+0.4
2,961,181	+		EFB2_02813	0.84	-1.0
2,961,181	+		EFB2_02813	0.84	-1.5
2,961,190	+		EFB2_02813	0.87	-1.8
2,961,190	+		EFB2_02813	0.87	-0.9
2,961,217	+				+1.7
2,961,253	+				-0.0
2,961,289	+				-2.3
2,961,289	+				-0.6
2,961,289	+				+1.8
2,961,303	+				-2.2
2,961,324	+				+2.9
2,961,361	+				+1.1
2,961,361	+				-2.0
2,961,362	-				-0.3
2,961,362	-				-0.9
2,961,381	+				+1.7
2,961,381	+				-0.5
2,961,381	+				+1.7
2,961,381	+				+1.4
2,961,381	+				-0.3
2,961,381	+				-0.8
2,961,381	+				+0.7
2,961,381	+				-0.5
2,961,381	+				-1.5
2,961,381	+				+0.4
2,961,381	+				+1.2
2,961,381	+				+3.4
2,961,382	-				+1.6
2,961,382	-				-0.1
2,961,382	-				-2.3
2,961,382	-				-0.5
2,961,382	-				+1.3
2,961,466	+		EFB2_02814	0.11	-0.8
2,961,466	+		EFB2_02814	0.11	-2.6
2,961,466	+		EFB2_02814	0.11	+2.0
2,961,466	+		EFB2_02814	0.11	-1.8
2,961,466	+		EFB2_02814	0.11	+1.7
2,961,467	-		EFB2_02814	0.11	+0.4
2,961,469	+		EFB2_02814	0.11	-0.1
2,961,469	+		EFB2_02814	0.11	+4.7
2,961,469	+		EFB2_02814	0.11	+3.0
2,961,469	+		EFB2_02814	0.11	-0.6
2,961,469	+		EFB2_02814	0.11	+2.3
2,961,469	+		EFB2_02814	0.11	-2.4
2,961,470	-		EFB2_02814	0.11	+3.0
2,961,470	-		EFB2_02814	0.11	+1.9
2,961,470	-		EFB2_02814	0.11	-0.9
2,961,470	-		EFB2_02814	0.11	+1.9
2,961,470	-		EFB2_02814	0.11	-1.2
2,961,470	-		EFB2_02814	0.11	+2.0
2,961,586	+		EFB2_02814	0.33	+2.7
2,961,589	+		EFB2_02814	0.34	-0.1
2,961,589	+		EFB2_02814	0.34	-1.3
2,961,589	+		EFB2_02814	0.34	+1.1
2,961,589	+		EFB2_02814	0.34	-0.9
2,961,589	+		EFB2_02814	0.34	+1.8
2,961,589	+		EFB2_02814	0.34	+3.1
2,961,589	+		EFB2_02814	0.34	-1.6
2,961,589	+		EFB2_02814	0.34	+1.7
2,961,590	-		EFB2_02814	0.34	-0.9
2,961,640	+		EFB2_02814	0.44	-3.6
2,961,640	+		EFB2_02814	0.44	-1.1
2,961,640	+		EFB2_02814	0.44	+0.9
2,961,640	+		EFB2_02814	0.44	+1.0
2,961,640	+		EFB2_02814	0.44	+1.5
2,961,640	+		EFB2_02814	0.44	-0.8
2,961,640	+		EFB2_02814	0.44	+2.1
2,961,641	-		EFB2_02814	0.44	+0.5
2,961,641	-		EFB2_02814	0.44	-0.5
2,961,641	-		EFB2_02814	0.44	-1.6
2,961,641	-		EFB2_02814	0.44	-1.5
2,961,641	-		EFB2_02814	0.44	-0.1
2,961,641	-		EFB2_02814	0.44	+0.6
2,961,641	-		EFB2_02814	0.44	-2.9
2,961,680	+		EFB2_02814	0.51	-0.3
2,961,680	+		EFB2_02814	0.51	-2.5
2,961,680	+		EFB2_02814	0.51	+0.7
2,961,680	+		EFB2_02814	0.51	-0.3
2,961,680	+		EFB2_02814	0.51	+3.1
2,961,680	+		EFB2_02814	0.51	+0.4
2,961,680	+		EFB2_02814	0.51	+2.5
2,961,680	+		EFB2_02814	0.51	+0.1
2,961,680	+		EFB2_02814	0.51	+1.7
2,961,680	+		EFB2_02814	0.51	-1.3
2,961,681	-		EFB2_02814	0.51	-0.9
2,961,681	-		EFB2_02814	0.51	+1.7
2,961,681	-		EFB2_02814	0.51	+1.0
2,961,681	-		EFB2_02814	0.51	+0.5
2,961,681	-		EFB2_02814	0.51	+1.9
2,961,681	-		EFB2_02814	0.51	-2.4
2,961,681	-		EFB2_02814	0.51	+0.5
2,961,681	-		EFB2_02814	0.51	+1.2
2,961,681	-		EFB2_02814	0.51	+0.9
2,961,681	-		EFB2_02814	0.51	+0.1
2,961,681	-		EFB2_02814	0.51	-2.3
2,961,681	-		EFB2_02814	0.51	-2.3
2,961,681	-		EFB2_02814	0.51	-2.2
2,961,681	-		EFB2_02814	0.51	+1.8
2,961,681	-		EFB2_02814	0.51	-0.3
2,961,681	-		EFB2_02814	0.51	-2.4
2,961,681	-		EFB2_02814	0.51	+0.8
2,961,681	-		EFB2_02814	0.51	-0.6
2,961,681	-		EFB2_02814	0.51	+4.6
2,961,681	-		EFB2_02814	0.51	-0.7
2,961,681	-		EFB2_02814	0.51	-0.8
2,961,682	+		EFB2_02814	0.52	-0.3
2,961,682	+		EFB2_02814	0.52	-0.8
2,961,682	+		EFB2_02814	0.52	-1.0
2,961,682	+		EFB2_02814	0.52	+2.0
2,961,682	+		EFB2_02814	0.52	+0.4
2,961,682	+		EFB2_02814	0.52	-1.3
2,961,683	-		EFB2_02814	0.52	+1.7
2,961,683	-		EFB2_02814	0.52	+3.1
2,961,683	-		EFB2_02814	0.52	+2.7
2,961,683	-		EFB2_02814	0.52	-1.1
2,961,683	-		EFB2_02814	0.52	+0.4
2,961,683	-		EFB2_02814	0.52	+1.5
2,961,683	-		EFB2_02814	0.52	+2.3
2,961,683	-		EFB2_02814	0.52	-0.8
2,961,683	-		EFB2_02814	0.52	-1.3
2,961,718	+		EFB2_02814	0.58	+2.5
2,961,719	-		EFB2_02814	0.59	+0.7
2,961,727	-		EFB2_02814	0.60	-1.1
2,961,727	-		EFB2_02814	0.60	-1.8
2,961,727	-		EFB2_02814	0.60	-2.0
2,961,736	+		EFB2_02814	0.62	-0.5
2,961,737	-		EFB2_02814	0.62	-1.3
2,961,759	-		EFB2_02814	0.66	-1.0
2,961,759	-		EFB2_02814	0.66	+1.0
2,961,759	-		EFB2_02814	0.66	-0.2
2,961,794	+		EFB2_02814	0.73	+2.2
2,961,794	+		EFB2_02814	0.73	-0.3
2,961,795	-		EFB2_02814	0.73	+0.8
2,961,919	+				+0.4
2,961,919	+				-0.5
2,961,920	-				-0.5
2,961,920	-				-1.6
2,961,932	-				+2.1
2,962,027	+		EFB2_02815	0.21	-1.2
2,962,027	+		EFB2_02815	0.21	+2.9
2,962,027	+		EFB2_02815	0.21	+1.2
2,962,028	-		EFB2_02815	0.21	+0.1
2,962,028	-		EFB2_02815	0.21	-1.0
2,962,028	-		EFB2_02815	0.21	+0.9
2,962,028	-		EFB2_02815	0.21	-1.6
2,962,029	+		EFB2_02815	0.22	+0.4
2,962,029	+		EFB2_02815	0.22	-0.3
2,962,029	+		EFB2_02815	0.22	+0.6
2,962,029	+		EFB2_02815	0.22	+1.7
2,962,029	+		EFB2_02815	0.22	+0.4
2,962,030	-		EFB2_02815	0.22	+1.7
2,962,030	-		EFB2_02815	0.22	+1.7
2,962,030	-		EFB2_02815	0.22	+2.7
2,962,030	-		EFB2_02815	0.22	+0.4
2,962,030	-		EFB2_02815	0.22	-0.1
2,962,030	-		EFB2_02815	0.22	-2.3
2,962,030	-		EFB2_02815	0.22	-1.4
2,962,036	+		EFB2_02815	0.23	-1.5
2,962,036	+		EFB2_02815	0.23	-2.5
2,962,037	-		EFB2_02815	0.23	+0.1
2,962,037	-		EFB2_02815	0.23	-0.3
2,962,037	-		EFB2_02815	0.23	-3.0
2,962,037	-		EFB2_02815	0.23	-1.0
2,962,039	+		EFB2_02815	0.24	+1.0
2,962,039	+		EFB2_02815	0.24	-1.6
2,962,039	+		EFB2_02815	0.24	-0.8
2,962,039	+		EFB2_02815	0.24	+0.5
2,962,040	-		EFB2_02815	0.24	-1.8
2,962,040	-		EFB2_02815	0.24	-0.3
2,962,040	-		EFB2_02815	0.24	+3.4
2,962,040	-		EFB2_02815	0.24	+2.7
2,962,040	-		EFB2_02815	0.24	+2.7
2,962,040	-		EFB2_02815	0.24	-2.0
2,962,040	-		EFB2_02815	0.24	-1.6
2,962,040	-		EFB2_02815	0.24	-1.0
2,962,040	-		EFB2_02815	0.24	+3.7
2,962,058	-		EFB2_02815	0.28	-1.8
2,962,084	+		EFB2_02815	0.34	+1.1
2,962,084	+		EFB2_02815	0.34	-0.8
2,962,084	+		EFB2_02815	0.34	+1.7
2,962,085	-		EFB2_02815	0.34	+0.4
2,962,085	-		EFB2_02815	0.34	+2.4
2,962,085	-		EFB2_02815	0.34	+1.1
2,962,087	+		EFB2_02815	0.35	+2.7
2,962,087	+		EFB2_02815	0.35	-0.5
2,962,135	+		EFB2_02815	0.46	+0.1
2,962,136	-		EFB2_02815	0.46	+4.1
2,962,136	-		EFB2_02815	0.46	-0.6
2,962,147	-		EFB2_02815	0.48	+1.7
2,962,216	+		EFB2_02815	0.64	-0.5
2,962,216	+		EFB2_02815	0.64	-2.4
2,962,216	+		EFB2_02815	0.64	-1.0
2,962,216	+		EFB2_02815	0.64	-1.6
2,962,216	+		EFB2_02815	0.64	-0.2
2,962,216	+		EFB2_02815	0.64	+1.9
2,962,216	+		EFB2_02815	0.64	+2.7
2,962,216	+		EFB2_02815	0.64	-1.6
2,962,216	+		EFB2_02815	0.64	+2.2
2,962,216	+		EFB2_02815	0.64	-0.1
2,962,216	+		EFB2_02815	0.64	+2.4
2,962,216	+		EFB2_02815	0.64	+1.4
2,962,216	+		EFB2_02815	0.64	-1.8
2,962,216	+		EFB2_02815	0.64	-3.0
2,962,216	+		EFB2_02815	0.64	-0.0
2,962,217	-		EFB2_02815	0.64	+0.1
2,962,217	-		EFB2_02815	0.64	-0.5
2,962,217	-		EFB2_02815	0.64	+0.4
2,962,217	-		EFB2_02815	0.64	-0.6
2,962,217	-		EFB2_02815	0.64	+1.5
2,962,217	-		EFB2_02815	0.64	-0.1
2,962,217	-		EFB2_02815	0.64	+1.1
2,962,217	-		EFB2_02815	0.64	-2.6
2,962,217	-		EFB2_02815	0.64	-1.2
2,962,217	-		EFB2_02815	0.64	+0.1
2,962,228	+		EFB2_02815	0.67	-1.7
2,962,228	+		EFB2_02815	0.67	+1.2
2,962,228	+		EFB2_02815	0.67	+1.5
2,962,228	+		EFB2_02815	0.67	-1.8
2,962,229	-		EFB2_02815	0.67	-0.3
2,962,229	-		EFB2_02815	0.67	-1.0
2,962,246	+		EFB2_02815	0.71	-1.1
2,962,246	+		EFB2_02815	0.71	-1.7
2,962,246	+		EFB2_02815	0.71	+1.0
2,962,246	+		EFB2_02815	0.71	+0.7
2,962,247	-		EFB2_02815	0.71	-0.9
2,962,273	+		EFB2_02815	0.77	-0.4
2,962,273	+		EFB2_02815	0.77	+1.2
2,962,273	+		EFB2_02815	0.77	+1.9
2,962,274	-		EFB2_02815	0.77	-2.1
2,962,274	-		EFB2_02815	0.77	-1.1
2,962,274	-		EFB2_02815	0.77	-1.3
2,962,276	+		EFB2_02815	0.78	+0.2
2,962,276	+		EFB2_02815	0.78	-1.4
2,962,276	+		EFB2_02815	0.78	-0.6
2,962,276	+		EFB2_02815	0.78	+1.7
2,962,276	+		EFB2_02815	0.78	-1.6
2,962,277	-		EFB2_02815	0.78	-1.8
2,962,277	-		EFB2_02815	0.78	+0.7
2,962,277	-		EFB2_02815	0.78	+0.8
2,962,277	-		EFB2_02815	0.78	+1.1
2,962,312	+		EFB2_02815	0.86	-1.8
2,962,312	+		EFB2_02815	0.86	-2.4
2,962,313	-		EFB2_02815	0.86	-0.3
2,962,313	-		EFB2_02815	0.86	+1.6
2,962,313	-		EFB2_02815	0.86	-1.1
2,962,313	-		EFB2_02815	0.86	+1.7
2,962,363	+				-1.4
2,962,394	+				-2.2
2,962,410	+				-0.5
2,962,411	-				-0.6
2,962,425	+				+2.0
2,962,425	+				+1.9
2,962,426	-				+0.3
2,962,426	-				+1.8
2,962,428	+				-1.5
2,962,428	+				+0.4
2,962,428	+				-2.4
2,962,428	+				+1.2
2,962,428	+				+2.5
2,962,429	-				+1.7
2,962,429	-				-2.6
2,962,429	-				+1.6
2,962,429	-				+0.2
2,962,429	-				+2.4
2,962,429	-				-2.3
2,962,429	-				+0.5
2,962,429	-				+0.4
2,962,429	-				+0.4
2,962,441	+				+1.1
2,962,441	+				-3.1
2,962,441	+				+0.9
2,962,441	+				+0.3
2,962,441	+				+1.8
2,962,441	+				+0.7
2,962,441	+				-0.6
2,962,441	+				-1.6
2,962,441	+				+1.1
2,962,441	+				+0.1
2,962,441	+				-1.2
2,962,441	+				+2.5
2,962,442	-				-2.4
2,962,442	-				+1.6
2,962,442	-				-1.1
2,962,442	-				+1.0
2,962,442	-				+0.1
2,962,442	-				-0.9
2,962,442	-				+1.5
2,962,442	-				+0.2
2,962,442	-				+0.2
2,962,442	-				-1.9
2,962,442	-				+2.7
2,962,442	-				+0.3
2,962,442	-				-1.0
2,962,442	-				+1.0
2,962,442	-				-2.5
2,962,442	-				+1.9
2,962,442	-				-2.7
2,962,457	-				+0.7
2,962,464	+				-1.4
2,962,464	+				+1.4
2,962,464	+				+1.4
2,962,464	+				+1.1
2,962,464	+				-1.6
2,962,464	+				-0.8
2,962,464	+				+1.7
2,962,465	-				-0.9
2,962,465	-				+1.4
2,962,465	-				-1.9
2,962,465	-				-2.6
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