Strain Fitness in Escherichia fergusonii Becca around EFB2_02805

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,955,363	-		EFB2_02803	0.80	+0.3
2,955,363	-		EFB2_02803	0.80	-1.8
2,955,363	-		EFB2_02803	0.80	+0.7
2,955,363	-		EFB2_02803	0.80	+1.3
2,955,363	-		EFB2_02803	0.80	-1.4
2,955,363	-		EFB2_02803	0.80	-0.3
2,955,363	-		EFB2_02803	0.80	+1.7
2,955,365	-		EFB2_02803	0.81	-0.1
2,955,365	-		EFB2_02803	0.81	+0.8
2,955,365	-		EFB2_02803	0.81	+1.6
2,955,365	-		EFB2_02803	0.81	+0.1
2,955,397	+		EFB2_02803	0.90	+0.8
2,955,397	+		EFB2_02803	0.90	-0.8
2,955,398	-				-1.9
2,955,398	-				+0.1
2,955,398	-				+2.7
2,955,398	-				-2.5
2,955,455	+				-1.8
2,955,455	+				+0.4
2,955,455	+				+2.2
2,955,455	+				+0.1
2,955,455	+				+1.1
2,955,455	+				-1.1
2,955,455	+				-0.6
2,955,455	+				-0.9
2,955,455	+				+1.8
2,955,455	+				+1.7
2,955,455	+				+1.7
2,955,455	+				+1.7
2,955,456	-				+1.6
2,955,456	-				+0.7
2,955,456	-				-0.8
2,955,456	-				+2.2
2,955,456	-				+0.0
2,955,456	-				-1.0
2,955,456	-				-3.4
2,955,456	-				+0.5
2,955,498	+				+0.5
2,955,499	-				+0.8
2,955,501	-				+0.1
2,955,544	+				-0.9
2,955,545	-				+0.0
2,955,666	+		EFB2_02804	0.34	+3.5
2,955,667	-		EFB2_02804	0.34	-1.9
2,955,667	-		EFB2_02804	0.34	+0.1
2,955,667	-		EFB2_02804	0.34	-2.5
2,955,667	-		EFB2_02804	0.34	+1.4
2,955,667	-		EFB2_02804	0.34	+1.6
2,955,667	-		EFB2_02804	0.34	+0.2
2,955,730	-		EFB2_02804	0.53	-0.2
2,955,730	-		EFB2_02804	0.53	-2.0
2,955,730	-		EFB2_02804	0.53	+1.5
2,955,730	-		EFB2_02804	0.53	+0.8
2,955,730	-		EFB2_02804	0.53	-2.0
2,955,750	+		EFB2_02804	0.59	+0.1
2,955,751	-		EFB2_02804	0.60	-1.6
2,955,752	+		EFB2_02804	0.60	+4.3
2,955,753	-		EFB2_02804	0.60	+0.4
2,955,753	-		EFB2_02804	0.60	+1.5
2,955,753	-		EFB2_02804	0.60	+2.2
2,955,753	-		EFB2_02804	0.60	+0.7
2,955,753	-		EFB2_02804	0.60	+0.4
2,955,753	-		EFB2_02804	0.60	-0.9
2,955,753	-		EFB2_02804	0.60	+1.9
2,955,767	+		EFB2_02804	0.65	+0.6
2,955,767	+		EFB2_02804	0.65	-0.8
2,955,768	-		EFB2_02804	0.65	+4.7
2,955,786	-		EFB2_02804	0.70	-1.3
2,955,796	+		EFB2_02804	0.73	-1.7
2,955,796	+		EFB2_02804	0.73	+4.4
2,955,797	-		EFB2_02804	0.74	-2.3
2,955,797	-		EFB2_02804	0.74	-0.3
2,955,850	+				-1.4
2,955,851	-				-1.2
2,955,865	+				-0.9
2,955,901	+				-0.8
2,955,902	-				-0.6
2,955,902	-				+1.0
2,955,902	-				+1.7
2,955,912	+				+1.1
2,955,912	+				-0.1
2,955,912	+				-1.3
2,955,912	+				+0.2
2,955,912	+				+1.5
2,955,912	+				-0.3
2,955,913	-				-2.4
2,955,913	-				+0.5
2,955,913	-				+1.3
2,955,913	-				+2.9
2,955,913	-				+1.1
2,955,913	-				-0.7
2,955,913	-				+0.4
2,955,913	-				-2.4
2,955,913	-				-0.2
2,955,913	-				-0.6
2,955,913	-				+2.7
2,955,914	+				+0.4
2,955,914	+				+0.8
2,955,914	+				+1.0
2,955,914	+				-1.1
2,955,914	+				+1.4
2,955,915	-				-2.1
2,955,915	-				+1.2
2,955,915	-				+1.1
2,955,915	-				+0.4
2,955,915	-				-3.5
2,955,915	-				-0.2
2,955,915	-				-0.6
2,955,915	-				+1.0
2,955,915	-				+1.6
2,955,915	-				-1.8
2,955,915	-				+1.0
2,955,915	-				-0.4
2,955,915	-				-0.1
2,955,957	+				-1.0
2,955,957	+				+1.1
2,955,958	-				-2.2
2,955,958	-				+0.3
2,955,958	-				-2.5
2,955,958	-				+0.7
2,955,971	+				+1.9
2,955,971	+				-0.3
2,955,971	+				+1.5
2,955,971	+				-1.6
2,955,971	+				+0.7
2,955,971	+				-1.1
2,955,971	+				+0.7
2,955,971	+				+2.3
2,955,971	+				-1.1
2,955,971	+				-0.3
2,955,971	+				-1.8
2,955,971	+				+0.3
2,955,971	+				-2.4
2,955,971	+				+0.6
2,955,972	-				+1.2
2,955,972	-				+1.5
2,955,972	-				-2.8
2,955,972	-				-0.6
2,955,972	-				+0.4
2,955,972	-				-0.3
2,955,972	-				-1.3
2,955,972	-				-3.8
2,955,972	-				-2.4
2,955,972	-				+2.3
2,955,972	-				-1.0
2,955,972	-				-2.3
2,955,972	-				+1.5
2,955,972	-				-0.6
2,955,972	-				+2.0
2,955,975	+				+1.8
2,955,975	+				-1.2
2,955,975	+				-2.7
2,955,975	+				-0.4
2,955,975	+				+0.3
2,955,975	+				+1.1
2,955,975	+				+0.4
2,955,975	+				-0.5
2,955,976	-				-1.0
2,955,976	-				+1.5
2,955,976	-				+2.7
2,955,976	-				+1.4
2,955,976	-				+0.2
2,955,976	-				-0.6
2,955,976	-				+0.7
2,955,976	-				+0.1
2,955,976	-				-1.6
2,955,976	-				-1.4
2,955,976	-				-2.5
2,955,990	+				-3.5
2,955,996	-				-2.2
2,955,996	-				+1.6
2,955,996	-				-2.8
2,955,996	-				+1.3
2,955,996	-				-0.3
2,955,998	+				+0.8
2,955,998	+				+2.8
2,955,998	+				-1.1
2,955,998	+				-1.3
2,956,011	-				+0.3
2,956,011	-				+2.2
2,956,014	-				+0.7
2,956,014	-				-0.8
2,956,014	-				+2.7
2,956,072	+				+2.4
2,956,097	-				-2.7
2,956,164	-				-2.5
2,956,164	-				+0.7
2,956,175	-				+1.7
2,956,175	-				-2.2
2,956,185	+				-0.3
2,956,214	+				-1.4
2,956,214	+				-1.7
2,956,257	+				-0.1
2,956,276	+				+1.0
2,956,277	-				-1.8
2,956,277	-				-1.9
2,956,283	-				-1.1
2,956,301	+				+0.7
2,956,301	+				+0.7
2,956,301	+				+1.9
2,956,301	+				+0.4
2,956,301	+				-1.5
2,956,302	-				+0.5
2,956,302	-				-1.2
2,956,306	-				+0.2
2,956,312	+				-2.7
2,956,326	+				+0.6
2,956,327	-				-1.7
2,956,356	+				-2.9
2,956,359	+				+0.1
2,956,359	+				+2.1
2,956,359	+				+3.0
2,956,359	+				+0.1
2,956,359	+				+1.6
2,956,359	+				+2.9
2,956,359	+				+0.6
2,956,359	+				+1.3
2,956,360	-				-0.9
2,956,360	-				-1.3
2,956,360	-				-1.4
2,956,360	-				+1.8
2,956,401	+		EFB2_02805	0.13	+2.4
2,956,401	+		EFB2_02805	0.13	+0.4
2,956,401	+		EFB2_02805	0.13	-3.3
2,956,401	+		EFB2_02805	0.13	-0.6
2,956,401	+		EFB2_02805	0.13	+1.7
2,956,401	+		EFB2_02805	0.13	+0.6
2,956,401	+		EFB2_02805	0.13	-0.6
2,956,402	-		EFB2_02805	0.13	+1.1
2,956,446	+		EFB2_02805	0.28	+1.1
2,956,446	+		EFB2_02805	0.28	-0.6
2,956,446	+		EFB2_02805	0.28	-1.5
2,956,446	+		EFB2_02805	0.28	-0.4
2,956,446	+		EFB2_02805	0.28	-2.5
2,956,446	+		EFB2_02805	0.28	+1.2
2,956,454	+		EFB2_02805	0.31	-1.6
2,956,557	+		EFB2_02805	0.66	-2.2
2,956,602	+		EFB2_02805	0.81	+0.6
2,956,602	+		EFB2_02805	0.81	+1.3
2,956,605	+		EFB2_02805	0.82	-2.8
2,956,605	+		EFB2_02805	0.82	-0.6
2,956,618	+		EFB2_02805	0.87	+2.7
2,956,618	+		EFB2_02805	0.87	+2.5
2,956,618	+		EFB2_02805	0.87	+1.8
2,956,618	+		EFB2_02805	0.87	+1.5
2,956,619	-		EFB2_02805	0.87	+0.8
2,956,620	+		EFB2_02805	0.87	+2.2
2,956,620	+		EFB2_02805	0.87	-0.5
2,956,642	+				+1.2
2,956,642	+				+0.7
2,956,654	+				-2.0
2,956,655	-				+2.7
2,956,689	+				-0.4
2,956,689	+				+1.0
2,956,689	+				-0.1
2,956,689	+				+0.8
2,956,690	-				-1.1
2,956,705	+				+1.9
2,956,705	+				+2.1
2,956,705	+				+1.7
2,956,708	+				-1.2
2,956,708	+				-0.3
2,956,710	+				+0.1
2,956,710	+				-0.2
2,956,710	+				+1.9
2,956,710	+				+1.1
2,956,710	+				-1.2
2,956,710	+				+0.4
2,956,710	+				+0.4
2,956,710	+				-0.3
2,956,710	+				-0.1
2,956,710	+				+2.7
2,956,710	+				-3.3
2,956,710	+				+1.9
2,956,711	-				-0.1
2,956,711	-				-2.2
2,956,711	-				+0.1
2,956,770	+		EFB2_02806	0.18	+1.1
2,956,934	+		EFB2_02806	0.53	+1.6
2,956,934	+		EFB2_02806	0.53	+1.3
2,956,934	+		EFB2_02806	0.53	-2.3
2,956,934	+		EFB2_02806	0.53	+1.3
2,956,934	+		EFB2_02806	0.53	+1.6
2,956,934	+		EFB2_02806	0.53	-1.7
2,956,935	-		EFB2_02806	0.53	+1.9
2,956,935	-		EFB2_02806	0.53	+1.1
2,956,947	+		EFB2_02806	0.56	-0.3
2,956,948	-		EFB2_02806	0.56	+0.9
2,956,948	-		EFB2_02806	0.56	+0.1
2,956,988	+		EFB2_02806	0.65	-1.6
2,956,988	+		EFB2_02806	0.65	-3.4
2,956,988	+		EFB2_02806	0.65	-2.1
2,956,988	+		EFB2_02806	0.65	-0.5
2,956,988	+		EFB2_02806	0.65	-2.4
2,956,988	+		EFB2_02806	0.65	+1.1
2,956,988	+		EFB2_02806	0.65	+2.7
2,956,988	+		EFB2_02806	0.65	-0.6
2,956,988	+		EFB2_02806	0.65	+1.6
2,956,988	+		EFB2_02806	0.65	+1.2
2,956,988	+		EFB2_02806	0.65	-0.5
2,956,988	+		EFB2_02806	0.65	-3.0
2,956,988	+		EFB2_02806	0.65	-0.8
2,956,988	+		EFB2_02806	0.65	+3.2
2,956,988	+		EFB2_02806	0.65	-1.0
2,956,988	+		EFB2_02806	0.65	+1.7
2,956,988	+		EFB2_02806	0.65	-0.1
2,956,988	+		EFB2_02806	0.65	-1.6
2,956,988	+		EFB2_02806	0.65	+2.0
2,956,988	+		EFB2_02806	0.65	-2.1
2,956,988	+		EFB2_02806	0.65	+0.8
2,956,988	+		EFB2_02806	0.65	+2.6
2,956,988	+		EFB2_02806	0.65	-0.6
2,956,988	+		EFB2_02806	0.65	-0.5
2,956,988	+		EFB2_02806	0.65	+0.3
2,956,989	-		EFB2_02806	0.65	+2.7
2,956,989	-		EFB2_02806	0.65	-1.3
2,956,989	-		EFB2_02806	0.65	+3.0
2,956,989	-		EFB2_02806	0.65	-0.6
2,956,989	-		EFB2_02806	0.65	-1.4
2,956,989	-		EFB2_02806	0.65	+1.5
2,956,989	-		EFB2_02806	0.65	-1.2
2,956,989	-		EFB2_02806	0.65	-2.5
2,956,989	-		EFB2_02806	0.65	+0.1
2,956,989	-		EFB2_02806	0.65	+0.5
2,956,989	-		EFB2_02806	0.65	+1.3
2,956,989	-		EFB2_02806	0.65	-2.0
2,956,989	-		EFB2_02806	0.65	-0.4
2,956,996	+		EFB2_02806	0.67	+0.0
2,956,996	+		EFB2_02806	0.67	-1.2
2,956,997	-		EFB2_02806	0.67	+0.4
2,957,000	+		EFB2_02806	0.68	-0.9
2,957,000	+		EFB2_02806	0.68	-2.2
2,957,001	-		EFB2_02806	0.68	+2.7
2,957,052	+		EFB2_02806	0.79	+1.8
2,957,052	+		EFB2_02806	0.79	+0.7
2,957,052	+		EFB2_02806	0.79	-0.4
2,957,052	+		EFB2_02806	0.79	-0.3
2,957,052	+		EFB2_02806	0.79	+1.3
2,957,052	+		EFB2_02806	0.79	+1.5
2,957,052	+		EFB2_02806	0.79	-0.5
2,957,052	+		EFB2_02806	0.79	+1.3
2,957,052	+		EFB2_02806	0.79	+1.7
2,957,052	+		EFB2_02806	0.79	+0.1
2,957,053	-		EFB2_02806	0.79	-2.6
2,957,053	-		EFB2_02806	0.79	-1.2
2,957,053	-		EFB2_02806	0.79	-1.9
2,957,053	-		EFB2_02806	0.79	+0.2
2,957,053	-		EFB2_02806	0.79	+2.4
2,957,053	-		EFB2_02806	0.79	-1.7
2,957,053	-		EFB2_02806	0.79	+0.4
2,957,053	-		EFB2_02806	0.79	+0.1
2,957,053	-		EFB2_02806	0.79	-0.9
2,957,053	-		EFB2_02806	0.79	-1.9
2,957,056	+		EFB2_02806	0.80	+0.3
2,957,056	+		EFB2_02806	0.80	-1.2
2,957,057	-		EFB2_02806	0.80	-1.9
2,957,057	-		EFB2_02806	0.80	+2.7
2,957,057	-		EFB2_02806	0.80	-0.9
2,957,057	-		EFB2_02806	0.80	-0.0
2,957,080	+		EFB2_02806	0.85	+1.6
2,957,081	-		EFB2_02806	0.85	+0.4
2,957,114	-				+2.1
2,957,128	+				-1.1
2,957,225	+		EFB2_02807	0.16	-0.6
2,957,225	+		EFB2_02807	0.16	+0.4
2,957,225	+		EFB2_02807	0.16	-1.1
2,957,225	+		EFB2_02807	0.16	-1.4
2,957,225	+		EFB2_02807	0.16	+2.1
2,957,225	+		EFB2_02807	0.16	+0.4
2,957,225	+		EFB2_02807	0.16	-0.3
2,957,225	+		EFB2_02807	0.16	-2.0
2,957,225	+		EFB2_02807	0.16	+2.4
2,957,225	+		EFB2_02807	0.16	+0.4
2,957,225	+		EFB2_02807	0.16	-1.2
2,957,225	+		EFB2_02807	0.16	-1.9
2,957,225	+		EFB2_02807	0.16	-2.0
2,957,225	+		EFB2_02807	0.16	+1.5
2,957,225	+		EFB2_02807	0.16	+0.7
2,957,225	+		EFB2_02807	0.16	-1.5
2,957,225	+		EFB2_02807	0.16	+2.2
2,957,225	+		EFB2_02807	0.16	-1.6
2,957,225	+		EFB2_02807	0.16	-0.8
2,957,225	+		EFB2_02807	0.16	+2.0
2,957,225	+		EFB2_02807	0.16	+0.3
2,957,225	+		EFB2_02807	0.16	-0.9
2,957,226	-		EFB2_02807	0.16	-1.1
2,957,226	-		EFB2_02807	0.16	+1.0
2,957,226	-		EFB2_02807	0.16	-1.4
2,957,226	-		EFB2_02807	0.16	-1.7
2,957,226	-		EFB2_02807	0.16	-0.6
2,957,226	-		EFB2_02807	0.16	+0.7
2,957,226	-		EFB2_02807	0.16	+0.4
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2,957,607	+				+3.2
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2,957,607	+				+0.7