Strain Fitness in Escherichia fergusonii Becca around EFB2_02225

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,359,560	-				-0.4
2,359,578	+				-0.8
2,359,630	+				-1.0
2,359,630	+				-0.0
2,359,630	+				-3.6
2,359,630	+				+1.4
2,359,651	+				+1.2
2,359,651	+				-0.9
2,359,757	+		EFB2_02224	0.21	-1.5
2,359,757	+		EFB2_02224	0.21	-2.0
2,359,757	+		EFB2_02224	0.21	-0.2
2,359,757	+		EFB2_02224	0.21	+2.6
2,359,757	+		EFB2_02224	0.21	-0.8
2,359,757	+		EFB2_02224	0.21	+2.1
2,359,758	-		EFB2_02224	0.21	+0.5
2,359,758	-		EFB2_02224	0.21	-0.0
2,359,773	+		EFB2_02224	0.23	+0.1
2,359,773	+		EFB2_02224	0.23	-0.7
2,359,773	+		EFB2_02224	0.23	-2.1
2,359,773	+		EFB2_02224	0.23	+3.4
2,359,777	+		EFB2_02224	0.23	+0.5
2,359,808	+		EFB2_02224	0.27	-1.0
2,359,809	-		EFB2_02224	0.27	+0.8
2,359,810	+		EFB2_02224	0.28	+1.5
2,359,810	+		EFB2_02224	0.28	-1.5
2,359,810	+		EFB2_02224	0.28	-1.7
2,359,810	+		EFB2_02224	0.28	+0.8
2,359,829	+		EFB2_02224	0.30	+1.0
2,359,846	+		EFB2_02224	0.32	+2.0
2,359,846	+		EFB2_02224	0.32	-2.2
2,359,879	+		EFB2_02224	0.37	-1.1
2,359,879	+		EFB2_02224	0.37	+0.4
2,359,879	+		EFB2_02224	0.37	+0.3
2,359,909	+		EFB2_02224	0.41	-1.4
2,359,909	+		EFB2_02224	0.41	-1.4
2,359,909	+		EFB2_02224	0.41	+2.6
2,359,909	+		EFB2_02224	0.41	-1.0
2,359,915	-		EFB2_02224	0.41	-0.0
2,359,945	+		EFB2_02224	0.45	+0.1
2,359,962	+		EFB2_02224	0.48	+1.5
2,360,008	+		EFB2_02224	0.54	+1.8
2,360,044	+		EFB2_02224	0.58	-1.7
2,360,068	+		EFB2_02224	0.62	-1.3
2,360,109	+		EFB2_02224	0.67	-1.2
2,360,109	+		EFB2_02224	0.67	-0.4
2,360,109	+		EFB2_02224	0.67	+1.1
2,360,119	+		EFB2_02224	0.68	-0.0
2,360,131	+		EFB2_02224	0.70	-1.5
2,360,131	+		EFB2_02224	0.70	-1.9
2,360,134	+		EFB2_02224	0.70	-1.9
2,360,259	+		EFB2_02224	0.87	-1.6
2,360,275	+		EFB2_02224	0.89	-2.8
2,360,278	+		EFB2_02224	0.89	-1.4
2,360,282	+		EFB2_02224	0.90	-1.8
2,360,286	+				+0.2
2,360,286	+				+2.4
2,360,286	+				-1.8
2,360,338	+				+2.2
2,360,357	+				-0.4
2,360,486	+				+1.3
2,360,486	+				+0.5
2,360,486	+				-2.0
2,360,486	+				-1.5
2,360,487	-				-0.0
2,360,487	-				+0.2
2,360,542	+				-2.1
2,360,542	+				-0.8
2,360,554	-				-0.2
2,360,564	-				+1.6
2,360,611	-				-1.0
2,360,641	+		EFB2_02225	0.12	-1.5
2,360,684	+		EFB2_02225	0.15	+0.6
2,360,713	+		EFB2_02225	0.17	+1.3
2,360,714	-		EFB2_02225	0.17	-1.9
2,360,723	+		EFB2_02225	0.18	-0.4
2,360,723	+		EFB2_02225	0.18	+0.6
2,360,723	+		EFB2_02225	0.18	-0.0
2,360,724	-		EFB2_02225	0.18	-1.2
2,360,751	+		EFB2_02225	0.20	-0.9
2,360,770	+		EFB2_02225	0.22	-2.3
2,360,803	+		EFB2_02225	0.24	-2.1
2,360,803	+		EFB2_02225	0.24	+2.1
2,360,803	+		EFB2_02225	0.24	+0.5
2,360,803	+		EFB2_02225	0.24	+2.9
2,360,803	+		EFB2_02225	0.24	+2.0
2,360,803	+		EFB2_02225	0.24	+3.2
2,360,803	+		EFB2_02225	0.24	-1.0
2,360,803	+		EFB2_02225	0.24	+0.5
2,360,803	+		EFB2_02225	0.24	-0.9
2,360,804	-		EFB2_02225	0.24	+0.6
2,360,804	-		EFB2_02225	0.24	+0.8
2,360,804	-		EFB2_02225	0.24	+0.7
2,360,804	-		EFB2_02225	0.24	-1.5
2,360,804	-		EFB2_02225	0.24	+0.6
2,360,807	+		EFB2_02225	0.24	-2.5
2,360,807	+		EFB2_02225	0.24	-0.6
2,360,807	+		EFB2_02225	0.24	+1.5
2,360,807	+		EFB2_02225	0.24	-1.3
2,360,807	+		EFB2_02225	0.24	-1.5
2,360,807	+		EFB2_02225	0.24	-0.4
2,360,808	-		EFB2_02225	0.24	+1.1
2,360,860	+		EFB2_02225	0.28	-1.7
2,360,860	+		EFB2_02225	0.28	+4.1
2,360,881	+		EFB2_02225	0.30	+1.1
2,360,881	+		EFB2_02225	0.30	-2.3
2,360,890	+		EFB2_02225	0.30	-1.9
2,361,034	-		EFB2_02225	0.41	-0.0
2,361,039	+		EFB2_02225	0.41	+1.8
2,361,039	+		EFB2_02225	0.41	+3.6
2,361,058	+		EFB2_02225	0.43	+1.3
2,361,059	-		EFB2_02225	0.43	-0.7
2,361,062	+		EFB2_02225	0.43	-0.9
2,361,062	+		EFB2_02225	0.43	+0.2
2,361,068	-		EFB2_02225	0.43	+1.0
2,361,135	+		EFB2_02225	0.48	-2.2
2,361,135	+		EFB2_02225	0.48	+2.8
2,361,136	-		EFB2_02225	0.48	+1.4
2,361,182	-		EFB2_02225	0.52	+2.8
2,361,224	-		EFB2_02225	0.55	-0.4
2,361,241	+		EFB2_02225	0.56	+2.7
2,361,262	+		EFB2_02225	0.58	+2.2
2,361,263	-		EFB2_02225	0.58	+4.4
2,361,263	-		EFB2_02225	0.58	+0.5
2,361,263	-		EFB2_02225	0.58	-1.0
2,361,263	-		EFB2_02225	0.58	-0.9
2,361,311	-		EFB2_02225	0.61	-1.0
2,361,336	+		EFB2_02225	0.63	+2.8
2,361,337	-		EFB2_02225	0.63	+0.2
2,361,388	+		EFB2_02225	0.67	-0.4
2,361,476	-		EFB2_02225	0.74	-0.4
2,361,476	-		EFB2_02225	0.74	+2.8
2,361,497	+		EFB2_02225	0.75	-0.9
2,361,499	+		EFB2_02225	0.75	-1.1
2,361,499	+		EFB2_02225	0.75	+1.1
2,361,539	+		EFB2_02225	0.78	-1.7
2,361,539	+		EFB2_02225	0.78	+2.2
2,361,564	+		EFB2_02225	0.80	-1.0
2,361,564	+		EFB2_02225	0.80	-0.2
2,361,565	-		EFB2_02225	0.80	-0.5
2,361,566	+		EFB2_02225	0.80	-1.2
2,361,566	+		EFB2_02225	0.80	-2.1
2,361,566	+		EFB2_02225	0.80	+1.9
2,361,566	+		EFB2_02225	0.80	+1.9
2,361,572	+		EFB2_02225	0.81	-0.2
2,361,572	+		EFB2_02225	0.81	+2.1
2,361,572	+		EFB2_02225	0.81	+3.8
2,361,572	+		EFB2_02225	0.81	+0.5
2,361,572	+		EFB2_02225	0.81	-2.3
2,361,572	+		EFB2_02225	0.81	-1.3
2,361,572	+		EFB2_02225	0.81	-0.8
2,361,572	+		EFB2_02225	0.81	+0.8
2,361,572	+		EFB2_02225	0.81	+2.3
2,361,572	+		EFB2_02225	0.81	-2.3
2,361,572	+		EFB2_02225	0.81	+2.4
2,361,572	+		EFB2_02225	0.81	-1.3
2,361,573	-		EFB2_02225	0.81	-0.5
2,361,573	-		EFB2_02225	0.81	+3.2
2,361,573	-		EFB2_02225	0.81	+1.1
2,361,573	-		EFB2_02225	0.81	-0.6
2,361,573	-		EFB2_02225	0.81	+2.8
2,361,573	-		EFB2_02225	0.81	-0.0
2,361,596	+		EFB2_02225	0.82	+2.7
2,361,596	+		EFB2_02225	0.82	-2.0
2,361,624	+		EFB2_02225	0.84	+2.2
2,361,625	-		EFB2_02225	0.84	-0.8
2,361,702	+				-2.0
2,361,702	+				+1.9
2,361,703	-				+0.9
2,361,703	-				-0.2
2,361,703	-				-1.7
2,361,705	+				-0.9
2,361,705	+				+1.3
2,361,713	+				+2.1
2,361,733	+				-0.5
2,361,733	+				+1.7
2,361,733	+				-1.9
2,361,733	+				+0.1
2,361,733	+				+1.8
2,361,753	+				-1.2
2,361,753	+				-2.8
2,361,753	+				+0.8
2,361,833	+				+2.4
2,361,858	+				+0.6
2,361,867	+				+2.8
2,361,867	+				-0.2
2,361,867	+				-2.3
2,361,867	+				+2.3
2,361,867	+				+0.6
2,361,867	+				-2.3
2,361,867	+				+0.9
2,361,867	+				+1.9
2,361,867	+				+0.2
2,361,867	+				+0.5
2,361,867	+				+1.8
2,361,867	+				-1.7
2,361,868	-				-0.0
2,361,868	-				-0.0
2,361,868	-				+2.1
2,361,868	-				-1.3
2,361,868	-				+1.5
2,361,868	-				+0.8
2,361,883	+				-1.5
2,361,883	+				+1.2
2,361,893	-				+3.0
2,361,893	-				-0.9
2,361,893	-				+1.3
2,361,893	-				+2.8
2,361,923	+				-1.3
2,361,960	+				-1.1
2,361,960	+				+1.6
2,361,960	+				+1.6
2,361,960	+				+4.1
2,361,960	+				-0.8
2,361,960	+				+0.0
2,361,960	+				+0.8
2,361,960	+				-2.3
2,361,960	+				+2.1
2,361,960	+				-2.2
2,361,960	+				+0.8
2,361,960	+				+2.1
2,361,960	+				-1.2
2,361,960	+				+1.8
2,361,960	+				+0.2
2,361,961	-				-0.8
2,361,961	-				-0.3
2,361,961	-				+1.8
2,361,961	-				-0.4
2,361,961	-				-0.4
2,361,961	-				-0.4
2,361,961	-				-1.9
2,361,961	-				-2.7
2,361,961	-				-1.3
2,361,961	-				+2.0
2,361,961	-				+1.6
2,361,961	-				-1.5
2,361,961	-				-0.2
2,361,961	-				-0.9
2,361,961	-				+0.5
2,361,961	-				+0.7
2,361,961	-				-1.0
2,361,961	-				+2.3
2,361,961	-				-0.4
2,361,961	-				-2.9
2,361,961	-				-1.2
2,361,961	-				-2.6
2,361,961	-				-1.9
2,361,961	-				-1.7
2,361,961	-				-0.9
2,361,961	-				+0.2
2,361,961	-				-1.2
2,361,961	-				-0.7
2,361,961	-				+0.9
2,361,961	-				+2.8
2,361,961	-				+3.5
2,361,961	-				-0.2
2,361,961	-				+2.3
2,361,961	-				-0.1
2,361,961	-				-1.3
2,361,961	-				-2.6
2,361,961	-				-2.3
2,361,961	-				+0.4
2,361,961	-				+1.5
2,361,962	+				+0.2
2,361,962	+				+1.3
2,361,962	+				+1.7
2,361,963	-				+3.3
2,361,963	-				-0.8
2,361,963	-				+2.0
2,361,963	-				-1.9
2,361,963	-				-0.9
2,361,963	-				+0.5
2,361,964	+				+3.8
2,361,964	+				+3.9
2,361,964	+				-0.0
2,361,964	+				+2.8
2,361,964	+				-1.6
2,361,964	+				-1.0
2,361,964	+				+0.2
2,361,964	+				+1.2
2,361,964	+				+1.9
2,361,965	-				+1.1
2,361,965	-				+0.8
2,361,965	-				+2.2
2,361,965	-				-0.3
2,361,965	-				-1.1
2,361,965	-				+1.8
2,361,965	-				-2.6
2,361,994	-		EFB2_02226	0.10	-1.8
2,362,024	-		EFB2_02226	0.15	-1.5
2,362,062	+		EFB2_02226	0.21	-1.1
2,362,062	+		EFB2_02226	0.21	+3.2
2,362,062	+		EFB2_02226	0.21	-0.7
2,362,062	+		EFB2_02226	0.21	+2.5
2,362,062	+		EFB2_02226	0.21	-0.8
2,362,062	+		EFB2_02226	0.21	+1.6
2,362,062	+		EFB2_02226	0.21	-0.2
2,362,063	-		EFB2_02226	0.21	+0.5
2,362,063	-		EFB2_02226	0.21	+2.9
2,362,063	-		EFB2_02226	0.21	-2.4
2,362,063	-		EFB2_02226	0.21	+0.4
2,362,063	-		EFB2_02226	0.21	+1.4
2,362,063	-		EFB2_02226	0.21	+0.6
2,362,063	-		EFB2_02226	0.21	-1.1
2,362,063	-		EFB2_02226	0.21	+2.7
2,362,064	+		EFB2_02226	0.21	-0.9
2,362,064	+		EFB2_02226	0.21	-0.5
2,362,064	+		EFB2_02226	0.21	+1.3
2,362,064	+		EFB2_02226	0.21	-1.2
2,362,064	+		EFB2_02226	0.21	+1.4
2,362,064	+		EFB2_02226	0.21	+1.1
2,362,064	+		EFB2_02226	0.21	+0.5
2,362,064	+		EFB2_02226	0.21	-1.5
2,362,065	-		EFB2_02226	0.21	-0.5
2,362,065	-		EFB2_02226	0.21	-2.1
2,362,065	-		EFB2_02226	0.21	+3.8
2,362,065	-		EFB2_02226	0.21	+2.9
2,362,065	-		EFB2_02226	0.21	-0.5
2,362,065	-		EFB2_02226	0.21	-0.7
2,362,065	-		EFB2_02226	0.21	-1.0
2,362,065	-		EFB2_02226	0.21	+3.8
2,362,065	-		EFB2_02226	0.21	+2.8
2,362,069	+		EFB2_02226	0.22	+0.2
2,362,069	+		EFB2_02226	0.22	-0.2
2,362,069	+		EFB2_02226	0.22	-0.5
2,362,070	-		EFB2_02226	0.22	-1.4
2,362,070	-		EFB2_02226	0.22	-0.2
2,362,070	-		EFB2_02226	0.22	-0.2
2,362,070	-		EFB2_02226	0.22	-1.2
2,362,070	-		EFB2_02226	0.22	-0.4
2,362,070	-		EFB2_02226	0.22	+0.8
2,362,070	-		EFB2_02226	0.22	+2.2
2,362,075	+		EFB2_02226	0.23	-2.3
2,362,099	-		EFB2_02226	0.27	-2.7
2,362,099	-		EFB2_02226	0.27	+1.8
2,362,099	-		EFB2_02226	0.27	-0.5
2,362,106	+		EFB2_02226	0.28	-1.9
2,362,107	-		EFB2_02226	0.28	+2.7
2,362,107	-		EFB2_02226	0.28	-2.0
2,362,107	-		EFB2_02226	0.28	-1.5
2,362,125	+		EFB2_02226	0.31	+3.2
2,362,144	+		EFB2_02226	0.34	-1.5
2,362,144	+		EFB2_02226	0.34	+2.1
2,362,144	+		EFB2_02226	0.34	-0.8
2,362,144	+		EFB2_02226	0.34	+2.8
2,362,144	+		EFB2_02226	0.34	+0.5
2,362,144	+		EFB2_02226	0.34	-1.1
2,362,144	+		EFB2_02226	0.34	-0.0
2,362,144	+		EFB2_02226	0.34	+1.8
2,362,144	+		EFB2_02226	0.34	-1.1
2,362,144	+		EFB2_02226	0.34	+0.5
2,362,145	-		EFB2_02226	0.34	+0.2
2,362,145	-		EFB2_02226	0.34	-1.8
2,362,145	-		EFB2_02226	0.34	+2.4
2,362,145	-		EFB2_02226	0.34	+3.1
2,362,145	-		EFB2_02226	0.34	+1.7
2,362,145	-		EFB2_02226	0.34	+3.8
2,362,145	-		EFB2_02226	0.34	+1.5
2,362,145	-		EFB2_02226	0.34	-0.4
2,362,145	-		EFB2_02226	0.34	-1.4
2,362,145	-		EFB2_02226	0.34	+0.2
2,362,145	-		EFB2_02226	0.34	+1.9
2,362,145	-		EFB2_02226	0.34	+1.8
2,362,145	-		EFB2_02226	0.34	+0.5
2,362,145	-		EFB2_02226	0.34	+0.6
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