Strain Fitness in Escherichia fergusonii Becca around EFB2_02201

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,334,776	+		EFB2_02198	0.76	+0.8
2,334,776	+		EFB2_02198	0.76	-2.8
2,334,776	+		EFB2_02198	0.76	+2.0
2,334,780	+		EFB2_02198	0.77	-0.0
2,334,780	+		EFB2_02198	0.77	-0.0
2,334,780	+		EFB2_02198	0.77	+2.1
2,334,780	+		EFB2_02198	0.77	-0.2
2,334,781	-		EFB2_02198	0.77	-1.0
2,334,781	-		EFB2_02198	0.77	+0.8
2,334,781	-		EFB2_02198	0.77	-0.4
2,334,781	-		EFB2_02198	0.77	+1.7
2,334,781	-		EFB2_02198	0.77	+2.2
2,334,882	+				+1.6
2,334,882	+				+2.2
2,334,882	+				+0.8
2,334,882	+				-0.0
2,334,882	+				-0.5
2,334,882	+				-3.3
2,334,882	+				+2.0
2,334,882	+				-0.1
2,334,882	+				-1.0
2,334,883	-				-1.0
2,334,883	-				-2.0
2,334,883	-				+0.5
2,334,883	-				+2.6
2,334,883	-				+2.3
2,334,883	-				-1.5
2,334,883	-				+0.5
2,334,883	-				-2.0
2,334,883	-				-1.0
2,334,883	-				+0.7
2,334,883	-				+1.4
2,334,883	-				+0.5
2,334,883	-				-0.5
2,334,883	-				-1.8
2,334,883	-				-0.5
2,334,884	+				+1.3
2,334,927	+		EFB2_02199	0.33	+1.9
2,334,982	+		EFB2_02199	0.63	-0.9
2,334,982	+		EFB2_02199	0.63	+0.1
2,334,998	+		EFB2_02199	0.72	+0.2
2,335,011	+		EFB2_02199	0.79	-1.9
2,335,011	+		EFB2_02199	0.79	-1.0
2,335,012	-		EFB2_02199	0.79	+0.8
2,335,047	+				-1.1
2,335,047	+				-0.0
2,335,047	+				-0.9
2,335,047	+				+1.5
2,335,051	+				-1.5
2,335,051	+				+0.1
2,335,051	+				-0.4
2,335,052	-				+0.0
2,335,052	-				+0.5
2,335,142	+				-0.7
2,335,142	+				+1.7
2,335,143	-				-0.4
2,335,143	-				-1.2
2,335,183	+				+0.9
2,335,183	+				+1.1
2,335,183	+				-0.0
2,335,184	-				+0.5
2,335,184	-				-1.7
2,335,184	-				-1.1
2,335,184	-				-1.5
2,335,184	-				-0.9
2,335,184	-				-0.4
2,335,184	-				+0.2
2,335,184	-				-0.0
2,335,217	+				+0.8
2,335,218	-				+2.1
2,335,230	-		EFB2_02200	0.13	-1.0
2,335,238	+		EFB2_02200	0.16	-2.2
2,335,286	+		EFB2_02200	0.36	+1.0
2,335,287	-		EFB2_02200	0.36	+0.2
2,335,292	+		EFB2_02200	0.38	-0.0
2,335,417	+		EFB2_02200	0.88	+1.8
2,335,417	+		EFB2_02200	0.88	+1.8
2,335,417	+		EFB2_02200	0.88	+0.8
2,335,417	+		EFB2_02200	0.88	-0.7
2,335,417	+		EFB2_02200	0.88	-0.0
2,335,417	+		EFB2_02200	0.88	+0.5
2,335,417	+		EFB2_02200	0.88	-0.2
2,335,417	+		EFB2_02200	0.88	-1.9
2,335,418	-		EFB2_02200	0.89	-0.4
2,335,418	-		EFB2_02200	0.89	-1.5
2,335,421	+				+1.2
2,335,422	-				+1.3
2,335,422	-				-0.0
2,335,425	+				-0.1
2,335,450	+				+0.7
2,335,451	-				-0.4
2,335,487	-				+1.8
2,335,494	-				+1.3
2,335,505	+				+3.2
2,335,506	-				+0.2
2,335,540	-				-0.2
2,335,557	+				-0.2
2,335,558	-				+0.8
2,335,561	-				+1.6
2,335,561	-				+0.5
2,335,561	-				+1.1
2,335,561	-				-1.7
2,335,582	+				-0.0
2,335,583	-				-0.9
2,335,583	-				+0.1
2,335,583	-				-2.6
2,335,583	-				-0.9
2,335,601	-				+1.2
2,335,624	-				+0.4
2,335,630	-				+0.8
2,335,641	-				+0.7
2,335,651	-				-0.5
2,335,651	-				-0.4
2,335,651	-				+0.2
2,335,682	+				+0.3
2,335,683	-				+0.7
2,335,683	-				+0.3
2,335,757	-				-1.5
2,335,774	-				-1.4
2,335,774	-				-1.7
2,335,774	-				-1.0
2,335,774	-				+0.2
2,335,774	-				+2.2
2,335,774	-				-1.1
2,335,774	-				-2.2
2,335,774	-				+3.8
2,335,836	-		EFB2_02201	0.12	-0.0
2,335,836	-		EFB2_02201	0.12	+1.1
2,335,836	-		EFB2_02201	0.12	-1.3
2,335,836	-		EFB2_02201	0.12	+0.4
2,335,836	-		EFB2_02201	0.12	+1.4
2,335,836	-		EFB2_02201	0.12	-0.0
2,335,839	-		EFB2_02201	0.12	+2.1
2,335,839	-		EFB2_02201	0.12	+3.8
2,335,863	+		EFB2_02201	0.15	+1.8
2,335,863	+		EFB2_02201	0.15	+0.5
2,335,864	-		EFB2_02201	0.15	+0.4
2,335,864	-		EFB2_02201	0.15	+4.4
2,335,864	-		EFB2_02201	0.15	-0.0
2,335,881	-		EFB2_02201	0.16	+2.8
2,335,881	-		EFB2_02201	0.16	-0.2
2,335,881	-		EFB2_02201	0.16	-1.7
2,335,887	+		EFB2_02201	0.17	+1.8
2,335,912	+		EFB2_02201	0.19	+2.8
2,335,912	+		EFB2_02201	0.19	-0.7
2,335,913	-		EFB2_02201	0.20	-0.3
2,335,913	-		EFB2_02201	0.20	+2.4
2,335,913	-		EFB2_02201	0.20	+0.2
2,336,018	-		EFB2_02201	0.30	+2.8
2,336,018	-		EFB2_02201	0.30	-1.0
2,336,018	-		EFB2_02201	0.30	-2.4
2,336,018	-		EFB2_02201	0.30	-1.9
2,336,021	-		EFB2_02201	0.30	+0.8
2,336,060	-		EFB2_02201	0.34	+1.8
2,336,062	+		EFB2_02201	0.34	+2.1
2,336,063	-		EFB2_02201	0.34	-0.5
2,336,063	-		EFB2_02201	0.34	+1.6
2,336,063	-		EFB2_02201	0.34	-0.2
2,336,063	-		EFB2_02201	0.34	+0.8
2,336,063	-		EFB2_02201	0.34	+0.7
2,336,084	+		EFB2_02201	0.36	+0.2
2,336,121	-		EFB2_02201	0.40	+1.4
2,336,121	-		EFB2_02201	0.40	-2.5
2,336,121	-		EFB2_02201	0.40	+1.5
2,336,126	-		EFB2_02201	0.40	-1.4
2,336,126	-		EFB2_02201	0.40	-0.0
2,336,126	-		EFB2_02201	0.40	-1.7
2,336,126	-		EFB2_02201	0.40	-2.2
2,336,132	-		EFB2_02201	0.41	+1.3
2,336,132	-		EFB2_02201	0.41	+2.3
2,336,132	-		EFB2_02201	0.41	-0.4
2,336,214	+		EFB2_02201	0.49	+1.9
2,336,214	+		EFB2_02201	0.49	+2.8
2,336,215	-		EFB2_02201	0.49	+0.3
2,336,215	-		EFB2_02201	0.49	+2.9
2,336,215	-		EFB2_02201	0.49	-2.2
2,336,240	-		EFB2_02201	0.51	-0.8
2,336,240	-		EFB2_02201	0.51	-1.0
2,336,240	-		EFB2_02201	0.51	-0.0
2,336,240	-		EFB2_02201	0.51	+0.5
2,336,278	+		EFB2_02201	0.55	+0.2
2,336,278	+		EFB2_02201	0.55	+0.7
2,336,279	-		EFB2_02201	0.55	-0.9
2,336,279	-		EFB2_02201	0.55	+0.7
2,336,279	-		EFB2_02201	0.55	+1.8
2,336,279	-		EFB2_02201	0.55	-0.9
2,336,279	-		EFB2_02201	0.55	+0.8
2,336,279	-		EFB2_02201	0.55	-0.8
2,336,279	-		EFB2_02201	0.55	-2.1
2,336,280	+		EFB2_02201	0.55	+1.0
2,336,280	+		EFB2_02201	0.55	-0.4
2,336,280	+		EFB2_02201	0.55	+1.0
2,336,280	+		EFB2_02201	0.55	-0.8
2,336,280	+		EFB2_02201	0.55	-1.1
2,336,281	-		EFB2_02201	0.55	+2.6
2,336,281	-		EFB2_02201	0.55	-1.1
2,336,281	-		EFB2_02201	0.55	-1.1
2,336,281	-		EFB2_02201	0.55	-0.0
2,336,281	-		EFB2_02201	0.55	+2.6
2,336,281	-		EFB2_02201	0.55	-0.1
2,336,281	-		EFB2_02201	0.55	-1.5
2,336,281	-		EFB2_02201	0.55	+0.5
2,336,281	-		EFB2_02201	0.55	-1.1
2,336,281	-		EFB2_02201	0.55	+1.9
2,336,281	-		EFB2_02201	0.55	-0.2
2,336,310	-		EFB2_02201	0.58	-0.7
2,336,310	-		EFB2_02201	0.58	-1.9
2,336,310	-		EFB2_02201	0.58	+2.4
2,336,310	-		EFB2_02201	0.58	-1.8
2,336,310	-		EFB2_02201	0.58	+1.2
2,336,310	-		EFB2_02201	0.58	-1.1
2,336,310	-		EFB2_02201	0.58	-0.5
2,336,310	-		EFB2_02201	0.58	-0.2
2,336,373	+		EFB2_02201	0.64	+1.6
2,336,373	+		EFB2_02201	0.64	-0.2
2,336,373	+		EFB2_02201	0.64	+0.7
2,336,374	-		EFB2_02201	0.65	-1.7
2,336,374	-		EFB2_02201	0.65	+3.7
2,336,374	-		EFB2_02201	0.65	-2.8
2,336,563	+		EFB2_02201	0.83	+2.2
2,336,564	-		EFB2_02201	0.83	-1.1
2,336,567	-		EFB2_02201	0.83	-1.4
2,336,567	-		EFB2_02201	0.83	+0.9
2,336,579	+		EFB2_02201	0.85	-0.0
2,336,579	+		EFB2_02201	0.85	+2.8
2,336,579	+		EFB2_02201	0.85	-1.2
2,336,579	+		EFB2_02201	0.85	+0.8
2,336,579	+		EFB2_02201	0.85	-0.0
2,336,579	+		EFB2_02201	0.85	+0.5
2,336,579	+		EFB2_02201	0.85	-1.6
2,336,579	+		EFB2_02201	0.85	+1.8
2,336,579	+		EFB2_02201	0.85	-0.4
2,336,579	+		EFB2_02201	0.85	+1.7
2,336,579	+		EFB2_02201	0.85	+3.6
2,336,580	-		EFB2_02201	0.85	+3.5
2,336,580	-		EFB2_02201	0.85	-1.5
2,336,580	-		EFB2_02201	0.85	-1.1
2,336,580	-		EFB2_02201	0.85	-1.7
2,336,580	-		EFB2_02201	0.85	-0.4
2,336,580	-		EFB2_02201	0.85	-0.2
2,336,580	-		EFB2_02201	0.85	+1.0
2,336,580	-		EFB2_02201	0.85	+2.2
2,336,580	-		EFB2_02201	0.85	+0.8
2,336,580	-		EFB2_02201	0.85	-0.5
2,336,580	-		EFB2_02201	0.85	+0.3
2,336,580	-		EFB2_02201	0.85	+0.4
2,336,580	-		EFB2_02201	0.85	-0.0
2,336,580	-		EFB2_02201	0.85	+3.9
2,336,580	-		EFB2_02201	0.85	-0.0
2,336,580	-		EFB2_02201	0.85	+1.8
2,336,580	-		EFB2_02201	0.85	+0.2
2,336,580	-		EFB2_02201	0.85	+2.1
2,336,580	-		EFB2_02201	0.85	-0.5
2,336,580	-		EFB2_02201	0.85	+0.8
2,336,581	+		EFB2_02201	0.85	+1.2
2,336,581	+		EFB2_02201	0.85	-0.0
2,336,581	+		EFB2_02201	0.85	+0.4
2,336,581	+		EFB2_02201	0.85	-0.8
2,336,581	+		EFB2_02201	0.85	-1.7
2,336,581	+		EFB2_02201	0.85	-2.1
2,336,581	+		EFB2_02201	0.85	+0.9
2,336,582	-		EFB2_02201	0.85	-0.2
2,336,582	-		EFB2_02201	0.85	-1.5
2,336,582	-		EFB2_02201	0.85	+2.4
2,336,582	-		EFB2_02201	0.85	-1.5
2,336,582	-		EFB2_02201	0.85	+0.5
2,336,582	-		EFB2_02201	0.85	-1.5
2,336,582	-		EFB2_02201	0.85	-2.9
2,336,582	-		EFB2_02201	0.85	+0.2
2,336,582	-		EFB2_02201	0.85	+2.0
2,336,582	-		EFB2_02201	0.85	+0.2
2,336,582	-		EFB2_02201	0.85	-1.9
2,336,582	-		EFB2_02201	0.85	+2.6
2,336,582	-		EFB2_02201	0.85	-1.0
2,336,582	-		EFB2_02201	0.85	+0.7
2,336,582	-		EFB2_02201	0.85	+0.7
2,336,582	-		EFB2_02201	0.85	-0.2
2,336,582	-		EFB2_02201	0.85	+0.2
2,336,582	-		EFB2_02201	0.85	-0.1
2,336,582	-		EFB2_02201	0.85	-2.0
2,336,582	-		EFB2_02201	0.85	+3.1
2,336,582	-		EFB2_02201	0.85	-0.8
2,336,582	-		EFB2_02201	0.85	+0.2
2,336,619	+		EFB2_02201	0.88	+3.9
2,336,619	+		EFB2_02201	0.88	+0.8
2,336,620	-		EFB2_02201	0.88	+1.4
2,336,620	-		EFB2_02201	0.88	-0.2
2,336,620	-		EFB2_02201	0.88	+2.2
2,336,620	-		EFB2_02201	0.88	-1.6
2,336,620	-		EFB2_02201	0.88	-1.1
2,336,620	-		EFB2_02201	0.88	-2.6
2,336,620	-		EFB2_02201	0.88	+0.2
2,336,620	-		EFB2_02201	0.88	-1.0
2,336,632	+		EFB2_02201	0.90	+0.2
2,336,632	+		EFB2_02201	0.90	-1.7
2,336,754	-				+1.0
2,336,763	-				-2.4
2,336,773	+				+1.8
2,336,774	-				+0.1
2,336,774	-				-0.7
2,336,777	+				-0.8
2,336,777	+				-0.9
2,336,778	-				+0.8
2,336,795	+				+0.6
2,336,795	+				-0.9
2,336,795	+				-1.0
2,336,795	+				+0.1
2,336,795	+				-1.1
2,336,796	-				+2.5
2,336,828	-				+1.5
2,336,828	-				+0.5
2,336,830	+				-2.0
2,336,830	+				+2.5
2,336,831	-				+1.8
2,336,900	+				+2.1
2,336,900	+				+1.5
2,336,904	+				-1.2
2,336,904	+				-1.3
2,336,904	+				+1.8
2,336,904	+				+1.5
2,336,904	+				+0.9
2,336,904	+				-0.3
2,336,904	+				-1.2
2,336,905	-				-1.2
2,336,905	-				-2.7
2,336,905	-				+0.8
2,336,917	+				-1.2
2,336,918	-				+5.4
2,336,997	+		EFB2_02202	0.30	+0.7
2,336,997	+		EFB2_02202	0.30	+0.2
2,336,998	-		EFB2_02202	0.31	-1.0
2,336,998	-		EFB2_02202	0.31	-0.2
2,337,038	-		EFB2_02202	0.46	+0.2
2,337,038	-		EFB2_02202	0.46	-1.1
2,337,107	+		EFB2_02202	0.73	+0.1
2,337,172	+				+3.2
2,337,191	+				-0.2
2,337,191	+				+1.9
2,337,191	+				+2.5
2,337,192	-				-0.2
2,337,192	-				+2.1
2,337,204	+				+2.8
2,337,204	+				-1.8
2,337,204	+				+1.5
2,337,204	+				+0.5
2,337,204	+				-1.6
2,337,204	+				-1.8
2,337,204	+				+0.0
2,337,204	+				-2.1
2,337,204	+				+3.5
2,337,204	+				-1.8
2,337,204	+				-2.0
2,337,204	+				-0.9
2,337,204	+				+3.2
2,337,204	+				+0.9
2,337,204	+				+0.7
2,337,204	+				-1.7
2,337,204	+				-2.0
2,337,204	+				+0.4
2,337,204	+				-1.3
2,337,204	+				+0.2
2,337,204	+				+1.1
2,337,204	+				-2.1
2,337,204	+				-1.3
2,337,204	+				+0.1
2,337,204	+				+2.2
2,337,204	+				-0.1
2,337,204	+				+1.0
2,337,204	+				+2.0
2,337,204	+				+1.7
2,337,204	+				+0.3
2,337,204	+				+2.0
2,337,205	-				-0.5
2,337,205	-				+1.2
2,337,205	-				+2.0
2,337,205	-				-2.0
2,337,205	-				+1.3
2,337,205	-				-0.5
2,337,205	-				-0.5
2,337,205	-				+2.3
2,337,205	-				+1.7
2,337,205	-				+2.3
2,337,205	-				-1.5
2,337,205	-				+2.5
2,337,205	-				+2.1
2,337,205	-				+1.7
2,337,205	-				-2.1
2,337,205	-				-1.2
2,337,205	-				+0.2
2,337,205	-				+2.8
2,337,205	-				-0.0
2,337,205	-				-1.2
2,337,205	-				+4.4
2,337,205	-				+0.7
2,337,208	+				+1.3
2,337,208	+				-1.6
2,337,260	+		EFB2_02203	0.18	-2.3
2,337,260	+		EFB2_02203	0.18	-2.2
2,337,260	+		EFB2_02203	0.18	+1.2
2,337,261	-		EFB2_02203	0.19	-1.6
2,337,341	+		EFB2_02203	0.42	+0.3
2,337,341	+		EFB2_02203	0.42	+1.8
2,337,341	+		EFB2_02203	0.42	+1.2
2,337,341	+		EFB2_02203	0.42	-0.7
2,337,342	-		EFB2_02203	0.42	-0.2
2,337,342	-		EFB2_02203	0.42	+1.5
2,337,342	-		EFB2_02203	0.42	+0.5
2,337,440	-		EFB2_02203	0.70	+0.2
2,337,456	+		EFB2_02203	0.75	-2.7
2,337,537	+				+0.2
2,337,538	-				+0.8
2,337,546	+				-0.9
2,337,546	+				-1.5
2,337,547	-				-0.1
2,337,547	-				+2.6
2,337,584	+				-1.0
2,337,584	+				-1.0
2,337,584	+				-1.0
2,337,584	+				+1.6
2,337,584	+				-1.1
2,337,584	+				+3.4
2,337,585	-				-0.7
2,337,585	-				-0.5
2,337,585	-				+0.7
2,337,586	+				-0.2
2,337,586	+				-0.8
2,337,586	+				-0.0
2,337,587	-				+0.7
2,337,587	-				-0.2
2,337,587	-				-1.6
2,337,587	-				+2.8
2,337,587	-				+0.8
2,337,587	-				-1.0
2,337,587	-				-1.2
2,337,587	-				+1.8
2,337,587	-				+2.3
2,337,587	-				+3.4
2,337,587	-				-2.5
2,337,587	-				-1.9
2,337,587	-				-1.2
2,337,587	-				-2.3
2,337,587	-				+1.9
2,337,587	-				-1.7
2,337,596	+				+1.8
2,337,649	+				-0.9
2,337,650	-				-0.7
2,337,650	-				-1.3
2,337,650	-				-1.8
2,337,658	+				+1.4
2,337,659	-				+0.8
2,337,659	-				-2.1
2,337,659	-				-1.7
2,337,659	-				-0.8
2,337,696	+				-1.5
2,337,707	-				+2.0
2,337,707	-				-0.2
2,337,707	-				+0.8
2,337,711	+				+1.5
2,337,711	+				+1.0
2,337,711	+				-1.0