Strain Fitness in Escherichia fergusonii Becca around EFB2_02129

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,269,417	+				+1.0
2,269,429	-				-1.9
2,269,439	+				+0.2
2,269,439	+				-0.7
2,269,439	+				+1.2
2,269,439	+				+0.2
2,269,440	-				-1.8
2,269,440	-				+0.6
2,269,440	-				-1.3
2,269,440	-				-1.4
2,269,450	+				-2.1
2,269,450	+				+0.1
2,269,451	-				+0.5
2,269,451	-				-1.1
2,269,451	-				-2.5
2,269,451	-				+0.3
2,269,451	-				-0.5
2,269,451	-				-0.2
2,269,459	+				-0.8
2,269,459	+				+0.1
2,269,459	+				+5.1
2,269,459	+				-0.2
2,269,460	-				-0.7
2,269,484	+				-0.4
2,269,484	+				-2.8
2,269,484	+				+2.1
2,269,484	+				-0.0
2,269,485	-				+2.1
2,269,485	-				+1.2
2,269,485	-				-1.0
2,269,507	+		EFB2_02126	0.22	+2.3
2,269,507	+		EFB2_02126	0.22	+1.7
2,269,507	+		EFB2_02126	0.22	-0.0
2,269,507	+		EFB2_02126	0.22	-1.0
2,269,507	+		EFB2_02126	0.22	+0.9
2,269,507	+		EFB2_02126	0.22	+0.9
2,269,508	-		EFB2_02126	0.23	-2.3
2,269,508	-		EFB2_02126	0.23	+0.5
2,269,508	-		EFB2_02126	0.23	+1.0
2,269,508	-		EFB2_02126	0.23	-0.1
2,269,508	-		EFB2_02126	0.23	-0.6
2,269,508	-		EFB2_02126	0.23	-2.2
2,269,511	+		EFB2_02126	0.26	-2.0
2,269,512	-		EFB2_02126	0.27	+1.6
2,269,512	-		EFB2_02126	0.27	-2.3
2,269,512	-		EFB2_02126	0.27	+1.8
2,269,536	+		EFB2_02126	0.49	-1.4
2,269,537	-		EFB2_02126	0.50	-3.5
2,269,568	+		EFB2_02126	0.79	+0.8
2,269,568	+		EFB2_02126	0.79	+1.1
2,269,568	+		EFB2_02126	0.79	-1.6
2,269,572	+		EFB2_02126	0.82	+0.4
2,269,572	+		EFB2_02126	0.82	+2.1
2,269,572	+		EFB2_02126	0.82	-0.4
2,269,572	+		EFB2_02126	0.82	+0.4
2,269,572	+		EFB2_02126	0.82	-2.4
2,269,573	-		EFB2_02126	0.83	-0.3
2,269,573	-		EFB2_02126	0.83	+1.0
2,269,573	-		EFB2_02126	0.83	-0.1
2,269,573	-		EFB2_02126	0.83	-0.9
2,269,573	-		EFB2_02126	0.83	-0.6
2,269,573	-		EFB2_02126	0.83	+0.8
2,269,573	-		EFB2_02126	0.83	+0.3
2,269,573	-		EFB2_02126	0.83	-0.0
2,269,573	-		EFB2_02126	0.83	-0.4
2,269,573	-		EFB2_02126	0.83	-0.6
2,269,573	-		EFB2_02126	0.83	+4.2
2,269,573	-		EFB2_02126	0.83	-0.8
2,269,591	+				+1.6
2,269,591	+				-1.6
2,269,611	+				+2.7
2,269,612	-				-1.2
2,269,612	-				+1.1
2,269,612	-				-2.2
2,269,618	-				-3.6
2,269,634	+				+1.9
2,269,634	+				+1.1
2,269,634	+				+2.3
2,269,634	+				+1.0
2,269,634	+				-2.1
2,269,634	+				+0.6
2,269,634	+				-1.2
2,269,634	+				+1.7
2,269,634	+				-1.1
2,269,634	+				+1.0
2,269,634	+				-0.9
2,269,635	+				-2.9
2,269,635	-				+0.9
2,269,635	-				+1.7
2,269,635	-				+0.3
2,269,635	-				-0.1
2,269,635	-				+0.4
2,269,635	-				-1.3
2,269,635	-				+0.7
2,269,635	-				+0.8
2,269,635	-				+1.9
2,269,649	+				-1.2
2,269,649	+				+0.5
2,269,649	+				+0.0
2,269,649	+				+1.3
2,269,649	+				+1.0
2,269,649	+				+0.8
2,269,649	+				+1.4
2,269,649	+				+1.0
2,269,649	+				-0.9
2,269,649	+				-3.0
2,269,649	+				+1.1
2,269,649	+				+1.5
2,269,649	+				+1.1
2,269,649	+				-0.6
2,269,649	+				-0.3
2,269,650	-				+1.3
2,269,650	-				-0.2
2,269,650	-				+0.0
2,269,650	-				+3.2
2,269,650	-				+1.7
2,269,650	-				-1.8
2,269,662	+		EFB2_02127	0.14	+0.7
2,269,662	+		EFB2_02127	0.14	+1.2
2,269,662	+		EFB2_02127	0.14	+0.2
2,269,662	+		EFB2_02127	0.14	-2.1
2,269,663	-		EFB2_02127	0.14	-2.0
2,269,663	-		EFB2_02127	0.14	-2.7
2,269,663	-		EFB2_02127	0.14	-0.5
2,269,663	-		EFB2_02127	0.14	+0.3
2,269,663	-		EFB2_02127	0.14	+0.9
2,269,663	-		EFB2_02127	0.14	-0.6
2,269,691	+		EFB2_02127	0.28	-1.3
2,269,691	+		EFB2_02127	0.28	-2.6
2,269,692	-		EFB2_02127	0.29	+0.1
2,269,692	-		EFB2_02127	0.29	+0.9
2,269,692	-		EFB2_02127	0.29	-3.2
2,269,692	-		EFB2_02127	0.29	-1.5
2,269,692	-		EFB2_02127	0.29	+0.7
2,269,692	-		EFB2_02127	0.29	+1.4
2,269,715	-		EFB2_02127	0.40	-0.7
2,269,715	-		EFB2_02127	0.40	+1.0
2,269,715	-		EFB2_02127	0.40	-2.2
2,269,738	+		EFB2_02127	0.52	-1.0
2,269,747	+		EFB2_02127	0.57	+1.9
2,269,748	-		EFB2_02127	0.57	-0.4
2,269,786	+		EFB2_02127	0.76	+0.0
2,269,787	-		EFB2_02127	0.77	-2.0
2,269,830	+				+1.8
2,269,830	+				-0.0
2,269,830	+				+0.3
2,269,830	+				-0.2
2,269,831	-				+0.7
2,269,831	-				-1.3
2,269,845	+				-1.3
2,269,845	+				-1.3
2,269,845	+				+0.1
2,269,845	+				-1.2
2,269,845	+				+0.7
2,269,845	+				-0.1
2,269,845	+				-0.7
2,269,845	+				+1.3
2,269,845	+				+0.7
2,269,845	+				-0.9
2,269,845	+				-3.5
2,269,846	-				+0.4
2,269,846	-				-2.3
2,269,846	-				+0.7
2,269,915	+				+0.2
2,269,916	-				-1.7
2,269,973	+				+0.7
2,269,974	-				+1.0
2,269,974	-				-0.7
2,269,975	+				-1.4
2,269,975	+				+1.1
2,269,976	-				+0.7
2,269,976	-				+1.6
2,269,976	-				-0.1
2,269,984	-				-1.6
2,269,986	-				-1.1
2,269,986	-				+3.1
2,269,987	+				+0.4
2,269,988	-				+1.5
2,269,988	-				-2.6
2,270,036	+				-2.1
2,270,037	-				+1.3
2,270,089	+				-0.4
2,270,089	+				-1.8
2,270,089	+				+0.6
2,270,089	+				+1.7
2,270,089	+				-1.0
2,270,091	+				-1.9
2,270,102	-				+0.4
2,270,102	-				+1.0
2,270,102	-				-1.0
2,270,102	-				-2.4
2,270,105	+				-1.6
2,270,107	+				-1.7
2,270,108	-				-1.9
2,270,108	-				-0.2
2,270,142	+				-0.9
2,270,142	+				-0.3
2,270,143	-				+3.2
2,270,147	-		EFB2_02128	0.11	+1.1
2,270,156	+		EFB2_02128	0.15	+3.1
2,270,156	+		EFB2_02128	0.15	-1.4
2,270,156	+		EFB2_02128	0.15	-1.7
2,270,157	-		EFB2_02128	0.16	-1.3
2,270,166	+		EFB2_02128	0.20	-2.7
2,270,166	+		EFB2_02128	0.20	+2.4
2,270,166	+		EFB2_02128	0.20	+1.1
2,270,166	+		EFB2_02128	0.20	+1.0
2,270,166	+		EFB2_02128	0.20	+1.2
2,270,166	+		EFB2_02128	0.20	+2.3
2,270,166	+		EFB2_02128	0.20	+2.3
2,270,166	+		EFB2_02128	0.20	-2.4
2,270,166	+		EFB2_02128	0.20	-0.1
2,270,167	-		EFB2_02128	0.21	-1.1
2,270,167	-		EFB2_02128	0.21	-0.5
2,270,167	-		EFB2_02128	0.21	+0.4
2,270,188	+		EFB2_02128	0.31	+1.4
2,270,188	+		EFB2_02128	0.31	-2.4
2,270,188	+		EFB2_02128	0.31	+0.7
2,270,188	+		EFB2_02128	0.31	-4.0
2,270,189	-		EFB2_02128	0.31	-1.9
2,270,189	-		EFB2_02128	0.31	+0.6
2,270,189	-		EFB2_02128	0.31	-2.8
2,270,189	-		EFB2_02128	0.31	-0.3
2,270,190	+		EFB2_02128	0.31	+0.4
2,270,190	+		EFB2_02128	0.31	-0.8
2,270,190	+		EFB2_02128	0.31	-0.6
2,270,191	-		EFB2_02128	0.32	+1.2
2,270,204	+		EFB2_02128	0.38	-2.1
2,270,204	+		EFB2_02128	0.38	-2.0
2,270,234	+		EFB2_02128	0.52	-0.7
2,270,234	+		EFB2_02128	0.52	+1.7
2,270,234	+		EFB2_02128	0.52	+0.7
2,270,235	-		EFB2_02128	0.53	+2.4
2,270,235	-		EFB2_02128	0.53	+1.7
2,270,235	-		EFB2_02128	0.53	+1.3
2,270,235	-		EFB2_02128	0.53	+1.0
2,270,235	-		EFB2_02128	0.53	-0.1
2,270,235	-		EFB2_02128	0.53	+1.0
2,270,235	-		EFB2_02128	0.53	-1.3
2,270,235	-		EFB2_02128	0.53	+0.1
2,270,235	-		EFB2_02128	0.53	-0.7
2,270,235	-		EFB2_02128	0.53	+0.3
2,270,239	+		EFB2_02128	0.54	-1.3
2,270,239	+		EFB2_02128	0.54	-2.0
2,270,240	-		EFB2_02128	0.55	-0.1
2,270,240	-		EFB2_02128	0.55	+2.6
2,270,274	+		EFB2_02128	0.71	+2.5
2,270,274	+		EFB2_02128	0.71	+0.2
2,270,274	+		EFB2_02128	0.71	-1.6
2,270,274	+		EFB2_02128	0.71	-0.9
2,270,275	-		EFB2_02128	0.71	-0.1
2,270,275	-		EFB2_02128	0.71	-0.1
2,270,296	+		EFB2_02128	0.81	+1.7
2,270,336	+				-1.4
2,270,337	-				+2.6
2,270,346	-				+0.1
2,270,346	-				+1.7
2,270,354	+				-1.0
2,270,355	-				-0.7
2,270,355	-				-0.3
2,270,356	+				+1.1
2,270,356	+				-0.4
2,270,356	+				-1.1
2,270,356	+				-1.4
2,270,356	+				-1.6
2,270,356	+				-2.6
2,270,356	+				+0.1
2,270,356	+				+1.1
2,270,356	+				+0.3
2,270,357	-				+0.7
2,270,357	-				-0.6
2,270,357	-				-1.9
2,270,359	+				+1.3
2,270,359	+				-3.0
2,270,359	+				+1.6
2,270,359	+				-3.1
2,270,359	+				-1.0
2,270,359	+				-3.5
2,270,359	+				+1.2
2,270,359	+				+0.1
2,270,359	+				-1.4
2,270,360	-				+0.1
2,270,360	-				-2.3
2,270,360	-				-2.9
2,270,360	-				-1.2
2,270,360	-				+0.6
2,270,360	-				+1.3
2,270,360	-				+3.4
2,270,360	-				-0.4
2,270,360	-				-1.9
2,270,360	-				-1.6
2,270,360	-				+0.6
2,270,360	-				-0.1
2,270,360	-				+0.3
2,270,360	-				-1.8
2,270,360	-				-0.6
2,270,360	-				-0.0
2,270,360	-				+0.1
2,270,360	-				-2.5
2,270,363	+				+1.7
2,270,363	+				-0.7
2,270,363	+				-2.4
2,270,363	+				-2.3
2,270,363	+				+0.4
2,270,364	-				-1.0
2,270,364	-				-0.9
2,270,384	+				-0.4
2,270,385	-				-0.3
2,270,403	+				+1.5
2,270,403	+				-0.3
2,270,403	+				+1.1
2,270,403	+				+1.7
2,270,403	+				+0.5
2,270,404	-				+3.4
2,270,404	-				+1.8
2,270,404	-				-0.7
2,270,404	-				-1.5
2,270,404	-				+0.7
2,270,404	-				+0.8
2,270,404	-				-1.4
2,270,415	+				-1.1
2,270,415	+				-1.9
2,270,415	+				-0.7
2,270,415	+				-0.1
2,270,415	+				+0.7
2,270,416	-				-0.3
2,270,416	-				+2.5
2,270,416	-				-0.6
2,270,417	+				+0.9
2,270,417	+				+0.1
2,270,417	+				+1.8
2,270,417	+				-0.4
2,270,417	+				-0.7
2,270,417	+				+1.2
2,270,417	+				-2.0
2,270,417	+				-0.1
2,270,417	+				+1.8
2,270,417	+				-1.7
2,270,417	+				-0.2
2,270,417	+				-1.5
2,270,417	+				-1.2
2,270,417	+				-1.8
2,270,417	+				-2.5
2,270,417	+				+1.1
2,270,417	+				+0.8
2,270,417	+				-1.4
2,270,417	+				+0.1
2,270,417	+				-2.1
2,270,417	+				-0.7
2,270,417	+				+1.1
2,270,418	-				-1.2
2,270,418	-				-0.9
2,270,418	-				-1.2
2,270,418	-				+0.6
2,270,418	-				+0.1
2,270,418	-				-0.7
2,270,418	-				+2.7
2,270,418	-				-2.0
2,270,418	-				-0.3
2,270,418	-				+0.9
2,270,418	-				+1.0
2,270,418	-				-1.6
2,270,418	-				+2.7
2,270,418	-				-2.6
2,270,418	-				+1.0
2,270,447	+				-1.4
2,270,447	+				-3.0
2,270,447	+				+2.1
2,270,447	+				+2.5
2,270,447	+				+0.3
2,270,448	-				-1.7
2,270,448	-				-1.4
2,270,448	-				+3.0
2,270,448	-				+2.3
2,270,448	-				-0.9
2,270,448	-				-1.3
2,270,448	-				+0.2
2,270,499	-		EFB2_02129	0.15	+4.5
2,270,539	+		EFB2_02129	0.22	+0.2
2,270,653	+		EFB2_02129	0.41	-0.1
2,270,653	+		EFB2_02129	0.41	+1.9
2,270,653	+		EFB2_02129	0.41	+0.1
2,270,654	-		EFB2_02129	0.41	-1.0
2,270,654	-		EFB2_02129	0.41	-0.7
2,270,654	-		EFB2_02129	0.41	-1.2
2,270,654	-		EFB2_02129	0.41	-1.8
2,270,669	+		EFB2_02129	0.44	-1.2
2,270,669	+		EFB2_02129	0.44	+0.3
2,270,682	+		EFB2_02129	0.46	+0.8
2,270,682	+		EFB2_02129	0.46	+1.7
2,270,682	+		EFB2_02129	0.46	+0.9
2,270,683	-		EFB2_02129	0.46	+0.2
2,270,683	-		EFB2_02129	0.46	-1.0
2,270,683	-		EFB2_02129	0.46	+1.1
2,270,683	-		EFB2_02129	0.46	+0.6
2,270,683	-		EFB2_02129	0.46	+1.7
2,270,713	+		EFB2_02129	0.51	+0.2
2,270,713	+		EFB2_02129	0.51	+1.0
2,270,714	-		EFB2_02129	0.51	+0.6
2,270,714	-		EFB2_02129	0.51	+0.4
2,270,714	-		EFB2_02129	0.51	+0.7
2,270,721	+		EFB2_02129	0.52	+0.0
2,270,721	+		EFB2_02129	0.52	+0.1
2,270,721	+		EFB2_02129	0.52	-1.7
2,270,721	+		EFB2_02129	0.52	+0.7
2,270,721	+		EFB2_02129	0.52	-1.8
2,270,721	+		EFB2_02129	0.52	+5.5
2,270,722	-		EFB2_02129	0.53	-0.4
2,270,759	+		EFB2_02129	0.59	+0.7
2,270,759	+		EFB2_02129	0.59	-0.3
2,270,759	+		EFB2_02129	0.59	+2.9
2,270,759	+		EFB2_02129	0.59	-0.7
2,270,759	+		EFB2_02129	0.59	+1.5
2,270,759	+		EFB2_02129	0.59	-0.2
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