Strain Fitness in Escherichia fergusonii Becca around EFB2_01712

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
1,805,604	-		EFB2_01710	0.56	+0.8
1,805,662	+		EFB2_01710	0.60	+0.5
1,805,697	+		EFB2_01710	0.63	+3.5
1,805,697	+		EFB2_01710	0.63	+1.4
1,805,697	+		EFB2_01710	0.63	+1.7
1,805,697	+		EFB2_01710	0.63	-1.3
1,805,698	-		EFB2_01710	0.63	+0.1
1,805,698	-		EFB2_01710	0.63	-3.3
1,805,698	-		EFB2_01710	0.63	-1.4
1,805,712	+		EFB2_01710	0.64	+2.4
1,805,712	+		EFB2_01710	0.64	-1.9
1,805,713	-		EFB2_01710	0.64	-1.5
1,805,767	+		EFB2_01710	0.69	-2.2
1,805,791	+		EFB2_01710	0.71	-0.9
1,805,792	-		EFB2_01710	0.71	+0.3
1,805,852	+		EFB2_01710	0.76	-2.3
1,805,893	+		EFB2_01710	0.79	-2.1
1,805,893	+		EFB2_01710	0.79	-1.0
1,805,894	-		EFB2_01710	0.79	+2.0
1,805,894	-		EFB2_01710	0.79	-1.4
1,805,894	-		EFB2_01710	0.79	-0.8
1,805,909	+		EFB2_01710	0.80	+1.3
1,805,910	-		EFB2_01710	0.80	-3.7
1,805,910	-		EFB2_01710	0.80	+3.0
1,805,956	+		EFB2_01710	0.84	+1.5
1,805,956	+		EFB2_01710	0.84	+1.8
1,805,957	-		EFB2_01710	0.84	+2.5
1,805,993	-		EFB2_01710	0.87	-2.0
1,806,000	+		EFB2_01710	0.87	-2.1
1,806,000	+		EFB2_01710	0.87	+1.3
1,806,001	-		EFB2_01710	0.88	-0.5
1,806,001	-		EFB2_01710	0.88	+1.9
1,806,052	+				-2.1
1,806,052	+				+0.1
1,806,053	-				-2.4
1,806,071	+				-2.0
1,806,071	+				+0.9
1,806,071	+				-2.0
1,806,071	+				+2.5
1,806,072	-				-1.0
1,806,072	-				+0.4
1,806,072	-				+0.4
1,806,072	-				-3.6
1,806,074	+				-2.6
1,806,094	+				-0.5
1,806,172	+				-2.1
1,806,172	+				-1.1
1,806,173	-				-0.5
1,806,173	-				+1.1
1,806,173	-				+0.4
1,806,178	+				+1.2
1,806,178	+				+0.3
1,806,178	+				-0.3
1,806,178	+				-1.7
1,806,178	+				-2.1
1,806,178	+				+1.0
1,806,179	-				-1.8
1,806,199	-				+1.1
1,806,203	-				+1.3
1,806,218	+				-2.3
1,806,219	-				+1.5
1,806,219	-				+0.1
1,806,225	-				+1.5
1,806,309	+				+1.6
1,806,316	+				-0.7
1,806,347	-				-0.9
1,806,362	+				-1.0
1,806,368	-				-1.0
1,806,383	+		EFB2_01711	0.15	+0.6
1,806,405	-		EFB2_01711	0.24	-0.7
1,806,406	+		EFB2_01711	0.24	-0.1
1,806,407	-		EFB2_01711	0.25	-1.5
1,806,407	-		EFB2_01711	0.25	+2.5
1,806,407	-		EFB2_01711	0.25	-1.9
1,806,407	-		EFB2_01711	0.25	+0.2
1,806,416	+		EFB2_01711	0.28	-0.7
1,806,416	+		EFB2_01711	0.28	-0.7
1,806,416	+		EFB2_01711	0.28	+0.1
1,806,416	+		EFB2_01711	0.28	-0.7
1,806,417	-		EFB2_01711	0.29	-3.0
1,806,417	-		EFB2_01711	0.29	+1.5
1,806,417	-		EFB2_01711	0.29	-2.7
1,806,418	+		EFB2_01711	0.29	-2.4
1,806,418	+		EFB2_01711	0.29	+0.2
1,806,419	-		EFB2_01711	0.30	+2.4
1,806,419	-		EFB2_01711	0.30	-1.4
1,806,419	-		EFB2_01711	0.30	-2.3
1,806,419	-		EFB2_01711	0.30	+4.0
1,806,419	-		EFB2_01711	0.30	-0.3
1,806,419	-		EFB2_01711	0.30	-2.5
1,806,419	-		EFB2_01711	0.30	+0.3
1,806,419	-		EFB2_01711	0.30	+3.3
1,806,419	-		EFB2_01711	0.30	-2.5
1,806,419	-		EFB2_01711	0.30	+2.7
1,806,457	+		EFB2_01711	0.45	-1.9
1,806,457	+		EFB2_01711	0.45	-1.7
1,806,458	-		EFB2_01711	0.46	+0.9
1,806,458	-		EFB2_01711	0.46	-2.7
1,806,458	-		EFB2_01711	0.46	+1.5
1,806,458	-		EFB2_01711	0.46	-2.1
1,806,579	+				+1.2
1,806,580	-				+0.1
1,806,580	-				-0.1
1,806,580	-				-0.0
1,806,580	-				-2.7
1,806,580	-				-1.7
1,806,587	+				-1.9
1,806,587	+				-2.3
1,806,588	-				-2.6
1,806,588	-				-0.8
1,806,591	+				-2.1
1,806,591	+				+1.8
1,806,591	+				-0.1
1,806,591	+				+0.8
1,806,591	+				+0.8
1,806,592	-				-0.3
1,806,592	-				-1.3
1,806,592	-				-0.6
1,806,592	-				-1.2
1,806,620	+				+1.7
1,806,621	-				-0.1
1,806,686	-		EFB2_01712	0.13	+1.1
1,806,727	+		EFB2_01712	0.19	-2.0
1,806,727	+		EFB2_01712	0.19	+0.5
1,806,729	+		EFB2_01712	0.19	+0.6
1,806,729	+		EFB2_01712	0.19	+3.5
1,806,772	+		EFB2_01712	0.25	+1.3
1,806,773	-		EFB2_01712	0.25	+3.1
1,806,777	-		EFB2_01712	0.26	+0.0
1,806,777	-		EFB2_01712	0.26	+1.1
1,806,787	+		EFB2_01712	0.27	-2.0
1,806,848	+		EFB2_01712	0.36	+3.1
1,806,848	+		EFB2_01712	0.36	+1.6
1,806,849	-		EFB2_01712	0.36	+1.4
1,806,849	-		EFB2_01712	0.36	+1.8
1,806,849	-		EFB2_01712	0.36	-1.9
1,806,880	+		EFB2_01712	0.40	-1.5
1,806,883	+		EFB2_01712	0.41	+1.7
1,806,895	+		EFB2_01712	0.42	+1.7
1,806,896	-		EFB2_01712	0.42	-1.4
1,806,916	+		EFB2_01712	0.45	+1.5
1,806,917	-		EFB2_01712	0.45	+0.0
1,806,920	+		EFB2_01712	0.46	+0.4
1,806,920	+		EFB2_01712	0.46	+1.0
1,806,920	+		EFB2_01712	0.46	+2.2
1,806,921	-		EFB2_01712	0.46	+2.6
1,806,921	-		EFB2_01712	0.46	+0.1
1,806,921	-		EFB2_01712	0.46	+0.5
1,806,921	-		EFB2_01712	0.46	-0.0
1,806,937	+		EFB2_01712	0.48	-0.9
1,806,952	-		EFB2_01712	0.50	-1.9
1,806,964	+		EFB2_01712	0.52	-3.5
1,806,964	+		EFB2_01712	0.52	-1.2
1,806,964	+		EFB2_01712	0.52	-3.2
1,806,965	-		EFB2_01712	0.52	+2.3
1,806,993	-		EFB2_01712	0.56	+0.7
1,807,021	+		EFB2_01712	0.60	-0.1
1,807,023	+		EFB2_01712	0.60	-0.1
1,807,055	+		EFB2_01712	0.65	-0.2
1,807,056	-		EFB2_01712	0.65	+2.9
1,807,056	-		EFB2_01712	0.65	+0.9
1,807,056	-		EFB2_01712	0.65	+0.3
1,807,060	-		EFB2_01712	0.65	+1.1
1,807,064	+		EFB2_01712	0.66	+0.9
1,807,080	+		EFB2_01712	0.68	-2.3
1,807,080	+		EFB2_01712	0.68	-1.0
1,807,080	+		EFB2_01712	0.68	-0.5
1,807,081	-		EFB2_01712	0.68	+2.0
1,807,081	-		EFB2_01712	0.68	+0.9
1,807,088	-		EFB2_01712	0.69	+3.8
1,807,113	+		EFB2_01712	0.73	+2.2
1,807,116	+		EFB2_01712	0.73	+2.4
1,807,116	+		EFB2_01712	0.73	-0.1
1,807,123	+		EFB2_01712	0.74	-0.9
1,807,123	+		EFB2_01712	0.74	-0.9
1,807,123	+		EFB2_01712	0.74	+0.7
1,807,128	-		EFB2_01712	0.75	-0.7
1,807,141	-		EFB2_01712	0.77	+2.0
1,807,144	-		EFB2_01712	0.77	-1.6
1,807,203	+		EFB2_01712	0.85	-1.2
1,807,203	+		EFB2_01712	0.85	+0.9
1,807,203	+		EFB2_01712	0.85	+0.1
1,807,204	-		EFB2_01712	0.85	+3.1
1,807,204	-		EFB2_01712	0.85	+0.2
1,807,204	-		EFB2_01712	0.85	+1.8
1,807,204	-		EFB2_01712	0.85	+1.5
1,807,207	+		EFB2_01712	0.86	+2.1
1,807,207	+		EFB2_01712	0.86	+0.5
1,807,207	+		EFB2_01712	0.86	+1.2
1,807,207	+		EFB2_01712	0.86	+0.3
1,807,207	+		EFB2_01712	0.86	-1.9
1,807,207	+		EFB2_01712	0.86	+2.1
1,807,208	-		EFB2_01712	0.86	+0.5
1,807,208	-		EFB2_01712	0.86	-1.9
1,807,208	-		EFB2_01712	0.86	+0.3
1,807,208	-		EFB2_01712	0.86	+3.6
1,807,208	-		EFB2_01712	0.86	+0.5
1,807,208	-		EFB2_01712	0.86	+0.9
1,807,208	-		EFB2_01712	0.86	-0.6
1,807,208	-		EFB2_01712	0.86	+0.9
1,807,208	-		EFB2_01712	0.86	+1.0
1,807,208	-		EFB2_01712	0.86	+2.5
1,807,208	-		EFB2_01712	0.86	+1.5
1,807,208	-		EFB2_01712	0.86	+0.7
1,807,208	-		EFB2_01712	0.86	+1.4
1,807,208	-		EFB2_01712	0.86	+4.3
1,807,209	+		EFB2_01712	0.86	+0.5
1,807,209	+		EFB2_01712	0.86	-0.5
1,807,209	+		EFB2_01712	0.86	+1.8
1,807,209	+		EFB2_01712	0.86	+2.6
1,807,209	+		EFB2_01712	0.86	-1.4
1,807,209	+		EFB2_01712	0.86	+0.2
1,807,209	+		EFB2_01712	0.86	+2.8
1,807,209	+		EFB2_01712	0.86	+3.7
1,807,209	+		EFB2_01712	0.86	+1.7
1,807,209	+		EFB2_01712	0.86	+0.5
1,807,209	+		EFB2_01712	0.86	-2.5
1,807,209	+		EFB2_01712	0.86	-0.9
1,807,210	-		EFB2_01712	0.86	+1.2
1,807,210	-		EFB2_01712	0.86	+0.1
1,807,210	-		EFB2_01712	0.86	-1.3
1,807,210	-		EFB2_01712	0.86	+1.0
1,807,210	-		EFB2_01712	0.86	+0.8
1,807,210	-		EFB2_01712	0.86	-1.4
1,807,210	-		EFB2_01712	0.86	-2.7
1,807,210	-		EFB2_01712	0.86	+1.5
1,807,210	-		EFB2_01712	0.86	+0.6
1,807,210	-		EFB2_01712	0.86	+1.6
1,807,210	-		EFB2_01712	0.86	-0.5
1,807,210	-		EFB2_01712	0.86	-1.5
1,807,210	-		EFB2_01712	0.86	+2.8
1,807,210	-		EFB2_01712	0.86	+3.1
1,807,280	+				+2.1
1,807,280	+				-0.5
1,807,281	-				+0.5
1,807,304	+				-1.9
1,807,304	+				-2.1
1,807,305	-				+0.1
1,807,305	-				+1.5
1,807,325	+				+1.7
1,807,325	+				+1.1
1,807,326	-				+2.1
1,807,346	+				+0.4
1,807,347	-				-1.9
1,807,351	+				+0.7
1,807,351	+				-2.4
1,807,352	-				+2.0
1,807,363	+				+2.2
1,807,460	+				-3.9
1,807,461	-				-1.7
1,807,589	+		EFB2_01713	0.15	+1.9
1,807,589	+		EFB2_01713	0.15	-1.1
1,807,590	-		EFB2_01713	0.15	+0.1
1,807,612	+		EFB2_01713	0.17	-0.3
1,807,613	-		EFB2_01713	0.17	-1.4
1,807,664	+		EFB2_01713	0.23	+1.4
1,807,664	+		EFB2_01713	0.23	-3.1
1,807,665	-		EFB2_01713	0.23	+1.2
1,807,665	-		EFB2_01713	0.23	-1.3
1,807,680	+		EFB2_01713	0.25	-0.1
1,807,681	-		EFB2_01713	0.25	-2.5
1,807,681	-		EFB2_01713	0.25	-0.8
1,807,692	+		EFB2_01713	0.26	+1.3
1,807,693	-		EFB2_01713	0.26	-1.5
1,807,693	-		EFB2_01713	0.26	+1.1
1,807,693	-		EFB2_01713	0.26	-1.8
1,807,722	+		EFB2_01713	0.30	+0.4
1,807,722	+		EFB2_01713	0.30	-2.5
1,807,722	+		EFB2_01713	0.30	+1.2
1,807,722	+		EFB2_01713	0.30	+1.1
1,807,722	+		EFB2_01713	0.30	+1.7
1,807,722	+		EFB2_01713	0.30	+0.7
1,807,723	-		EFB2_01713	0.30	+2.1
1,807,723	-		EFB2_01713	0.30	+0.4
1,807,723	-		EFB2_01713	0.30	-2.3
1,807,723	-		EFB2_01713	0.30	+0.5
1,807,723	-		EFB2_01713	0.30	+0.1
1,807,723	-		EFB2_01713	0.30	-0.1
1,807,727	+		EFB2_01713	0.30	+1.5
1,807,727	+		EFB2_01713	0.30	+0.2
1,807,728	-		EFB2_01713	0.30	-0.2
1,807,728	-		EFB2_01713	0.30	+0.3
1,807,728	-		EFB2_01713	0.30	+0.1
1,807,793	+		EFB2_01713	0.38	-2.0
1,807,827	+		EFB2_01713	0.42	-1.3
1,807,828	-		EFB2_01713	0.42	+2.0
1,807,861	+		EFB2_01713	0.45	-2.2
1,807,861	+		EFB2_01713	0.45	+1.4
1,807,861	+		EFB2_01713	0.45	-1.5
1,807,861	+		EFB2_01713	0.45	-0.9
1,807,862	-		EFB2_01713	0.46	-0.1
1,807,865	+		EFB2_01713	0.46	-1.1
1,807,865	+		EFB2_01713	0.46	-2.9
1,807,866	-		EFB2_01713	0.46	+0.8
1,807,905	+		EFB2_01713	0.50	-0.9
1,807,905	+		EFB2_01713	0.50	+0.5
1,807,938	+		EFB2_01713	0.54	+0.5
1,807,939	-		EFB2_01713	0.54	+2.5
1,807,939	-		EFB2_01713	0.54	-0.2
1,807,939	-		EFB2_01713	0.54	-2.5
1,807,967	+		EFB2_01713	0.57	-1.9
1,807,967	+		EFB2_01713	0.57	+1.2
1,807,967	+		EFB2_01713	0.57	+2.5
1,807,967	+		EFB2_01713	0.57	-2.3
1,807,967	+		EFB2_01713	0.57	+1.4
1,807,967	+		EFB2_01713	0.57	-2.6
1,807,967	+		EFB2_01713	0.57	+3.0
1,807,967	+		EFB2_01713	0.57	+1.0
1,807,967	+		EFB2_01713	0.57	+1.0
1,807,967	+		EFB2_01713	0.57	-0.1
1,807,967	+		EFB2_01713	0.57	+1.2
1,807,967	+		EFB2_01713	0.57	-0.1
1,807,968	-		EFB2_01713	0.58	-1.6
1,807,968	-		EFB2_01713	0.58	+0.1
1,807,968	-		EFB2_01713	0.58	-0.9
1,807,971	+		EFB2_01713	0.58	+1.2
1,808,067	+		EFB2_01713	0.69	-0.9
1,808,090	+		EFB2_01713	0.71	+0.4
1,808,090	+		EFB2_01713	0.71	-1.3
1,808,090	+		EFB2_01713	0.71	+0.9
1,808,091	-		EFB2_01713	0.71	+1.4
1,808,091	-		EFB2_01713	0.71	-3.1
1,808,091	-		EFB2_01713	0.71	+1.4
1,808,091	-		EFB2_01713	0.71	+1.5
1,808,091	-		EFB2_01713	0.71	+1.5
1,808,130	+		EFB2_01713	0.76	+0.8
1,808,131	-		EFB2_01713	0.76	-3.0
1,808,131	-		EFB2_01713	0.76	+0.7
1,808,131	-		EFB2_01713	0.76	-2.1
1,808,148	+		EFB2_01713	0.78	+0.4
1,808,149	-		EFB2_01713	0.78	-1.9
1,808,176	+		EFB2_01713	0.81	-1.8
1,808,176	+		EFB2_01713	0.81	-3.4
1,808,177	-		EFB2_01713	0.81	+1.2
1,808,177	-		EFB2_01713	0.81	-1.1
1,808,177	-		EFB2_01713	0.81	-0.4
1,808,261	+				-0.1
1,808,261	+				-1.0
1,808,261	+				-0.6
1,808,261	+				-0.5
1,808,261	+				+1.8
1,808,261	+				-2.2
1,808,261	+				-2.8
1,808,261	+				-0.7
1,808,261	+				-1.2
1,808,261	+				+0.6
1,808,261	+				+0.7
1,808,262	-				+0.5
1,808,262	-				-0.8
1,808,262	-				+3.0
1,808,262	-				-2.8
1,808,262	-				-1.3
1,808,262	-				-2.4
1,808,262	-				+0.9
1,808,262	-				+3.8
1,808,262	-				-1.6
1,808,262	-				+0.1
1,808,262	-				-1.0
1,808,262	-				-0.5
1,808,262	-				-0.4
1,808,262	-				+0.0
1,808,262	-				-3.3
1,808,277	+				-0.1
1,808,277	+				+0.9
1,808,277	+				+0.5
1,808,277	+				-0.3
1,808,278	-				-1.9
1,808,278	-				-2.8
1,808,278	-				+0.0
1,808,278	-				-3.0
1,808,278	-				+1.2
1,808,278	-				-1.2
1,808,278	-				+1.5
1,808,278	-				+1.5
1,808,278	-				-0.2
1,808,302	-				-0.5