Strain Fitness in Escherichia fergusonii Becca around EFB2_01555

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
1,626,750	+				-3.1
1,626,766	+				-1.6
1,626,775	-				-1.1
1,626,787	+				-1.3
1,626,787	+				+1.9
1,626,787	+				+0.1
1,626,787	+				+0.1
1,626,788	-				+1.4
1,626,807	+				+1.4
1,626,808	-				+1.0
1,626,846	+				-0.7
1,626,847	-				+0.2
1,626,913	-		EFB2_01554	0.11	-0.7
1,626,913	-		EFB2_01554	0.11	+1.3
1,626,913	-		EFB2_01554	0.11	-3.5
1,626,915	+		EFB2_01554	0.11	-2.2
1,626,916	-		EFB2_01554	0.11	-0.4
1,626,916	-		EFB2_01554	0.11	-3.4
1,626,916	-		EFB2_01554	0.11	+1.3
1,626,916	-		EFB2_01554	0.11	+1.3
1,626,916	-		EFB2_01554	0.11	+0.2
1,626,939	+		EFB2_01554	0.14	+0.7
1,627,033	+		EFB2_01554	0.24	-3.7
1,627,046	+		EFB2_01554	0.26	-1.6
1,627,047	-		EFB2_01554	0.26	+2.4
1,627,047	-		EFB2_01554	0.26	+1.5
1,627,047	-		EFB2_01554	0.26	+1.8
1,627,049	+		EFB2_01554	0.26	+1.2
1,627,049	+		EFB2_01554	0.26	-0.4
1,627,049	+		EFB2_01554	0.26	+0.1
1,627,049	+		EFB2_01554	0.26	-1.5
1,627,049	+		EFB2_01554	0.26	-0.6
1,627,049	+		EFB2_01554	0.26	-2.1
1,627,049	+		EFB2_01554	0.26	+2.3
1,627,049	+		EFB2_01554	0.26	-0.4
1,627,049	+		EFB2_01554	0.26	-2.4
1,627,049	+		EFB2_01554	0.26	+1.0
1,627,050	-		EFB2_01554	0.26	+0.5
1,627,050	-		EFB2_01554	0.26	+2.9
1,627,050	-		EFB2_01554	0.26	+0.6
1,627,050	-		EFB2_01554	0.26	+0.3
1,627,050	-		EFB2_01554	0.26	-0.9
1,627,050	-		EFB2_01554	0.26	-1.8
1,627,050	-		EFB2_01554	0.26	+3.4
1,627,050	-		EFB2_01554	0.26	+1.9
1,627,050	-		EFB2_01554	0.26	+2.9
1,627,050	-		EFB2_01554	0.26	-0.5
1,627,050	-		EFB2_01554	0.26	+0.0
1,627,050	-		EFB2_01554	0.26	-1.3
1,627,050	-		EFB2_01554	0.26	-0.7
1,627,050	-		EFB2_01554	0.26	+0.7
1,627,050	-		EFB2_01554	0.26	+0.2
1,627,050	-		EFB2_01554	0.26	+1.3
1,627,088	+		EFB2_01554	0.30	-2.2
1,627,089	-		EFB2_01554	0.31	-0.4
1,627,100	+		EFB2_01554	0.32	-1.0
1,627,101	-		EFB2_01554	0.32	-0.4
1,627,109	+		EFB2_01554	0.33	+2.0
1,627,109	+		EFB2_01554	0.33	-2.1
1,627,110	-		EFB2_01554	0.33	+0.6
1,627,110	-		EFB2_01554	0.33	-1.0
1,627,110	-		EFB2_01554	0.33	-2.3
1,627,126	+		EFB2_01554	0.35	+0.8
1,627,126	+		EFB2_01554	0.35	-1.9
1,627,194	-		EFB2_01554	0.42	-1.5
1,627,215	+		EFB2_01554	0.45	-0.1
1,627,296	-		EFB2_01554	0.54	+1.9
1,627,296	-		EFB2_01554	0.54	+0.3
1,627,296	-		EFB2_01554	0.54	-1.0
1,627,296	-		EFB2_01554	0.54	-0.9
1,627,296	-		EFB2_01554	0.54	-1.7
1,627,301	+		EFB2_01554	0.54	+1.7
1,627,302	-		EFB2_01554	0.54	+1.0
1,627,311	-		EFB2_01554	0.55	-3.4
1,627,347	+		EFB2_01554	0.59	+0.1
1,627,347	+		EFB2_01554	0.59	+1.4
1,627,347	+		EFB2_01554	0.59	+1.8
1,627,347	+		EFB2_01554	0.59	-1.3
1,627,347	+		EFB2_01554	0.59	+1.4
1,627,347	+		EFB2_01554	0.59	-1.4
1,627,348	-		EFB2_01554	0.60	-0.9
1,627,348	-		EFB2_01554	0.60	+0.2
1,627,348	-		EFB2_01554	0.60	-0.5
1,627,348	-		EFB2_01554	0.60	+1.4
1,627,348	-		EFB2_01554	0.60	-1.8
1,627,348	-		EFB2_01554	0.60	-0.6
1,627,348	-		EFB2_01554	0.60	+0.9
1,627,357	+		EFB2_01554	0.61	-1.5
1,627,357	+		EFB2_01554	0.61	+0.2
1,627,358	-		EFB2_01554	0.61	-3.1
1,627,358	-		EFB2_01554	0.61	+0.7
1,627,358	-		EFB2_01554	0.61	+1.0
1,627,358	-		EFB2_01554	0.61	+0.1
1,627,360	+		EFB2_01554	0.61	+0.9
1,627,360	+		EFB2_01554	0.61	-0.5
1,627,360	+		EFB2_01554	0.61	+1.1
1,627,360	+		EFB2_01554	0.61	-0.7
1,627,360	+		EFB2_01554	0.61	-0.1
1,627,360	+		EFB2_01554	0.61	-2.6
1,627,361	-		EFB2_01554	0.61	-1.1
1,627,361	-		EFB2_01554	0.61	+0.6
1,627,361	-		EFB2_01554	0.61	+0.4
1,627,439	+		EFB2_01554	0.70	+1.5
1,627,440	-		EFB2_01554	0.70	+0.5
1,627,440	-		EFB2_01554	0.70	+1.2
1,627,569	+		EFB2_01554	0.84	-0.1
1,627,569	+		EFB2_01554	0.84	-0.4
1,627,570	-		EFB2_01554	0.84	+0.1
1,627,614	-		EFB2_01554	0.89	+1.4
1,627,677	+				-1.7
1,627,677	+				+2.6
1,627,677	+				+0.5
1,627,678	-				+0.5
1,627,678	-				+1.4
1,627,701	+				-0.7
1,627,701	+				-0.4
1,627,701	+				-1.3
1,627,701	+				+0.4
1,627,701	+				-1.7
1,627,701	+				-2.4
1,627,701	+				+0.4
1,627,701	+				+0.6
1,627,702	-				-0.7
1,627,702	-				+0.5
1,627,702	-				+0.3
1,627,702	-				-1.1
1,627,702	-				+0.2
1,627,702	-				-0.1
1,627,702	-				-1.0
1,627,702	-				+1.6
1,627,702	-				+0.6
1,627,702	-				-2.0
1,627,702	-				+0.0
1,627,702	-				+1.6
1,627,702	-				-3.1
1,627,702	-				+3.1
1,627,702	-				-2.4
1,627,723	-				+1.9
1,627,745	+				-1.7
1,627,745	+				-1.1
1,627,746	-				+1.4
1,627,746	-				-0.1
1,627,746	-				-3.1
1,627,746	-				-1.6
1,627,746	-				+1.6
1,627,809	+		EFB2_01555	0.22	+0.3
1,627,809	+		EFB2_01555	0.22	-2.4
1,627,809	+		EFB2_01555	0.22	-2.6
1,627,809	+		EFB2_01555	0.22	+1.0
1,627,809	+		EFB2_01555	0.22	-2.3
1,627,809	+		EFB2_01555	0.22	-3.1
1,627,809	+		EFB2_01555	0.22	-2.8
1,627,809	+		EFB2_01555	0.22	+1.9
1,627,809	+		EFB2_01555	0.22	+1.1
1,627,809	+		EFB2_01555	0.22	+1.4
1,627,809	+		EFB2_01555	0.22	-1.7
1,627,809	+		EFB2_01555	0.22	-0.9
1,627,809	+		EFB2_01555	0.22	+1.7
1,627,809	+		EFB2_01555	0.22	-2.4
1,627,809	+		EFB2_01555	0.22	+0.9
1,627,810	-		EFB2_01555	0.22	-0.3
1,627,810	-		EFB2_01555	0.22	+1.0
1,627,810	-		EFB2_01555	0.22	+0.4
1,627,810	-		EFB2_01555	0.22	-1.4
1,627,810	-		EFB2_01555	0.22	-2.3
1,627,810	-		EFB2_01555	0.22	+0.9
1,627,810	-		EFB2_01555	0.22	+0.2
1,627,810	-		EFB2_01555	0.22	-2.5
1,627,810	-		EFB2_01555	0.22	-0.1
1,627,810	-		EFB2_01555	0.22	+1.1
1,627,810	-		EFB2_01555	0.22	-1.2
1,627,810	-		EFB2_01555	0.22	+0.3
1,627,882	+		EFB2_01555	0.42	+1.0
1,627,883	-		EFB2_01555	0.42	+0.6
1,627,883	-		EFB2_01555	0.42	-0.4
1,627,889	+		EFB2_01555	0.44	+3.2
1,627,890	-		EFB2_01555	0.44	-2.6
1,627,890	-		EFB2_01555	0.44	-2.4
1,627,890	-		EFB2_01555	0.44	-1.5
1,627,890	-		EFB2_01555	0.44	-2.8
1,627,890	-		EFB2_01555	0.44	-3.1
1,627,890	-		EFB2_01555	0.44	+0.8
1,627,890	-		EFB2_01555	0.44	-0.2
1,627,890	-		EFB2_01555	0.44	+1.3
1,627,901	-		EFB2_01555	0.47	-0.1
1,627,901	-		EFB2_01555	0.47	-0.2
1,627,923	+		EFB2_01555	0.53	+2.6
1,627,923	+		EFB2_01555	0.53	-2.6
1,627,924	-		EFB2_01555	0.53	-0.5
1,627,942	+		EFB2_01555	0.58	-1.1
1,627,942	+		EFB2_01555	0.58	+1.1
1,627,943	-		EFB2_01555	0.59	-2.1
1,627,952	-		EFB2_01555	0.61	+2.3
1,627,981	+		EFB2_01555	0.69	+0.4
1,627,994	-		EFB2_01555	0.73	-1.3
1,628,000	-		EFB2_01555	0.74	-3.6
1,628,015	-		EFB2_01555	0.79	+0.2
1,628,029	+		EFB2_01555	0.82	+0.6
1,628,029	+		EFB2_01555	0.82	-0.7
1,628,029	+		EFB2_01555	0.82	+0.2
1,628,029	+		EFB2_01555	0.82	-1.2
1,628,030	-		EFB2_01555	0.83	-0.9
1,628,030	-		EFB2_01555	0.83	-2.5
1,628,045	-		EFB2_01555	0.87	-3.3
1,628,045	-		EFB2_01555	0.87	-1.8
1,628,063	+				-2.4
1,628,064	-				+0.1
1,628,066	-				-0.5
1,628,066	-				-0.4
1,628,066	-				+2.9
1,628,066	-				+0.1
1,628,071	+				+0.3
1,628,071	+				+0.6
1,628,071	+				-2.4
1,628,072	-				+0.4
1,628,072	-				+0.9
1,628,072	-				-0.9
1,628,074	+				-0.6
1,628,113	-				-1.3
1,628,116	+				+0.7
1,628,116	+				-1.3
1,628,116	+				+2.2
1,628,116	+				-2.8
1,628,116	+				+1.4
1,628,116	+				+2.4
1,628,116	+				-0.7
1,628,116	+				-1.0
1,628,117	-				-2.6
1,628,117	-				-2.0
1,628,117	-				-0.5
1,628,117	-				+1.1
1,628,117	-				-0.1
1,628,117	-				-0.8
1,628,117	-				+0.6
1,628,117	-				+1.4
1,628,117	-				+2.2
1,628,126	+				+0.1
1,628,126	+				-2.1
1,628,127	-				-0.0
1,628,127	-				+0.1
1,628,127	-				-0.9
1,628,127	-				+0.4
1,628,129	+				-2.0
1,628,129	+				-0.5
1,628,129	+				+1.0
1,628,130	-				+1.5
1,628,130	-				-0.4
1,628,130	-				+0.1
1,628,150	+				-2.8
1,628,150	+				-2.3
1,628,150	+				+2.4
1,628,151	-				+0.5
1,628,151	-				+0.6
1,628,155	-				-1.2
1,628,155	-				+0.1
1,628,155	-				-2.1
1,628,155	-				+0.8
1,628,186	-				+0.7
1,628,186	-				+0.8
1,628,249	+		EFB2_01556	0.15	-2.0
1,628,250	-		EFB2_01556	0.16	-2.6
1,628,250	-		EFB2_01556	0.16	+1.4
1,628,286	+		EFB2_01556	0.21	+1.9
1,628,287	-		EFB2_01556	0.21	+2.4
1,628,287	-		EFB2_01556	0.21	-1.1
1,628,308	-		EFB2_01556	0.25	-3.3
1,628,321	+		EFB2_01556	0.27	-1.9
1,628,321	+		EFB2_01556	0.27	-3.3
1,628,321	+		EFB2_01556	0.27	+0.4
1,628,321	+		EFB2_01556	0.27	+2.2
1,628,321	+		EFB2_01556	0.27	+0.1
1,628,321	+		EFB2_01556	0.27	+0.7
1,628,321	+		EFB2_01556	0.27	+1.8
1,628,322	-		EFB2_01556	0.27	-1.5
1,628,322	-		EFB2_01556	0.27	-0.1
1,628,322	-		EFB2_01556	0.27	-2.1
1,628,322	-		EFB2_01556	0.27	+3.2
1,628,322	-		EFB2_01556	0.27	+2.1
1,628,368	+		EFB2_01556	0.34	-0.4
1,628,368	+		EFB2_01556	0.34	+0.2
1,628,368	+		EFB2_01556	0.34	+1.4
1,628,368	+		EFB2_01556	0.34	-1.4
1,628,368	+		EFB2_01556	0.34	+1.9
1,628,368	+		EFB2_01556	0.34	-0.5
1,628,368	+		EFB2_01556	0.34	-0.8
1,628,368	+		EFB2_01556	0.34	+1.3
1,628,368	+		EFB2_01556	0.34	-2.6
1,628,368	+		EFB2_01556	0.34	+0.1
1,628,368	+		EFB2_01556	0.34	+0.9
1,628,368	+		EFB2_01556	0.34	-0.3
1,628,368	+		EFB2_01556	0.34	-0.2
1,628,368	+		EFB2_01556	0.34	-0.4
1,628,368	+		EFB2_01556	0.34	+0.3
1,628,368	+		EFB2_01556	0.34	-1.3
1,628,368	+		EFB2_01556	0.34	-0.6
1,628,368	+		EFB2_01556	0.34	+0.2
1,628,368	+		EFB2_01556	0.34	-1.3
1,628,369	-		EFB2_01556	0.34	+0.1
1,628,369	-		EFB2_01556	0.34	-0.4
1,628,369	-		EFB2_01556	0.34	-0.4
1,628,369	-		EFB2_01556	0.34	-1.5
1,628,369	-		EFB2_01556	0.34	+1.3
1,628,369	-		EFB2_01556	0.34	+0.9
1,628,369	-		EFB2_01556	0.34	-0.4
1,628,369	-		EFB2_01556	0.34	+0.9
1,628,369	-		EFB2_01556	0.34	+2.1
1,628,369	-		EFB2_01556	0.34	-0.3
1,628,369	-		EFB2_01556	0.34	-0.7
1,628,369	-		EFB2_01556	0.34	+1.7
1,628,369	-		EFB2_01556	0.34	-0.9
1,628,369	-		EFB2_01556	0.34	+2.3
1,628,369	-		EFB2_01556	0.34	-3.1
1,628,369	-		EFB2_01556	0.34	+2.2
1,628,369	-		EFB2_01556	0.34	-2.8
1,628,369	-		EFB2_01556	0.34	+1.3
1,628,369	-		EFB2_01556	0.34	+1.4
1,628,375	+		EFB2_01556	0.35	-1.7
1,628,375	+		EFB2_01556	0.35	-1.0
1,628,375	+		EFB2_01556	0.35	-3.7
1,628,376	-		EFB2_01556	0.35	-0.1
1,628,376	-		EFB2_01556	0.35	-0.1
1,628,376	-		EFB2_01556	0.35	+1.2
1,628,376	-		EFB2_01556	0.35	+1.2
1,628,376	-		EFB2_01556	0.35	-0.9
1,628,409	+		EFB2_01556	0.40	-3.5
1,628,414	+		EFB2_01556	0.41	+0.1
1,628,414	+		EFB2_01556	0.41	-0.7
1,628,414	+		EFB2_01556	0.41	+1.2
1,628,442	+		EFB2_01556	0.45	-0.3
1,628,442	+		EFB2_01556	0.45	-1.2
1,628,443	-		EFB2_01556	0.45	-1.6
1,628,443	-		EFB2_01556	0.45	+0.9
1,628,482	+		EFB2_01556	0.51	+1.1
1,628,483	-		EFB2_01556	0.52	-0.4
1,628,483	-		EFB2_01556	0.52	+1.0
1,628,495	-		EFB2_01556	0.53	+2.8
1,628,495	-		EFB2_01556	0.53	-0.2
1,628,495	-		EFB2_01556	0.53	-0.6
1,628,503	+		EFB2_01556	0.55	+0.5
1,628,503	+		EFB2_01556	0.55	-1.9
1,628,504	-		EFB2_01556	0.55	+1.8
1,628,504	-		EFB2_01556	0.55	+2.2
1,628,504	-		EFB2_01556	0.55	-0.3
1,628,564	+		EFB2_01556	0.64	+0.1
1,628,564	+		EFB2_01556	0.64	+3.4
1,628,564	+		EFB2_01556	0.64	+0.6
1,628,564	+		EFB2_01556	0.64	-2.1
1,628,564	+		EFB2_01556	0.64	-1.0
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1,629,088	+		EFB2_01557	0.24	+0.8