Strain Fitness in Escherichia fergusonii Becca around EFB2_01503

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
1,570,689	-				+2.3
1,570,764	-		EFB2_01502	0.11	+1.1
1,570,778	-		EFB2_01502	0.13	-0.9
1,570,782	+		EFB2_01502	0.13	+0.4
1,570,811	+		EFB2_01502	0.16	+1.0
1,570,864	+		EFB2_01502	0.22	-0.7
1,570,864	+		EFB2_01502	0.22	+0.5
1,570,865	-		EFB2_01502	0.22	+0.6
1,570,951	+		EFB2_01502	0.31	+1.6
1,570,951	+		EFB2_01502	0.31	-1.6
1,570,952	-		EFB2_01502	0.31	-1.7
1,570,952	-		EFB2_01502	0.31	-0.7
1,570,952	-		EFB2_01502	0.31	+1.4
1,570,952	-		EFB2_01502	0.31	+0.9
1,570,952	-		EFB2_01502	0.31	+4.3
1,570,960	+		EFB2_01502	0.32	+0.8
1,570,961	-		EFB2_01502	0.32	+1.0
1,570,977	-		EFB2_01502	0.34	-1.4
1,570,977	-		EFB2_01502	0.34	-1.5
1,571,012	+		EFB2_01502	0.38	-1.1
1,571,013	-		EFB2_01502	0.38	-3.3
1,571,016	+		EFB2_01502	0.38	-1.8
1,571,017	-		EFB2_01502	0.38	+0.7
1,571,054	+		EFB2_01502	0.42	-0.1
1,571,064	-		EFB2_01502	0.43	+1.3
1,571,079	-		EFB2_01502	0.45	+2.2
1,571,082	-		EFB2_01502	0.45	+2.4
1,571,087	+		EFB2_01502	0.46	+0.2
1,571,087	+		EFB2_01502	0.46	+1.8
1,571,097	+		EFB2_01502	0.47	-0.1
1,571,097	+		EFB2_01502	0.47	+2.0
1,571,097	+		EFB2_01502	0.47	+1.8
1,571,097	+		EFB2_01502	0.47	-1.2
1,571,129	+		EFB2_01502	0.50	+1.9
1,571,138	+		EFB2_01502	0.51	-1.6
1,571,139	-		EFB2_01502	0.51	-3.4
1,571,139	-		EFB2_01502	0.51	+4.3
1,571,139	-		EFB2_01502	0.51	+4.4
1,571,139	-		EFB2_01502	0.51	-0.2
1,571,142	-		EFB2_01502	0.51	+2.2
1,571,179	+		EFB2_01502	0.55	+2.4
1,571,180	-		EFB2_01502	0.55	+1.0
1,571,182	+		EFB2_01502	0.56	+1.3
1,571,183	-		EFB2_01502	0.56	+2.2
1,571,183	-		EFB2_01502	0.56	+1.0
1,571,183	-		EFB2_01502	0.56	-1.5
1,571,256	-		EFB2_01502	0.63	-2.4
1,571,273	+		EFB2_01502	0.65	+3.1
1,571,273	+		EFB2_01502	0.65	+0.1
1,571,273	+		EFB2_01502	0.65	+0.1
1,571,285	-		EFB2_01502	0.67	-2.0
1,571,321	+		EFB2_01502	0.70	+3.3
1,571,321	+		EFB2_01502	0.70	-2.8
1,571,322	-		EFB2_01502	0.70	-2.3
1,571,322	-		EFB2_01502	0.70	+1.7
1,571,322	-		EFB2_01502	0.70	-2.7
1,571,349	+		EFB2_01502	0.73	-1.5
1,571,349	+		EFB2_01502	0.73	-0.9
1,571,349	+		EFB2_01502	0.73	-0.5
1,571,349	+		EFB2_01502	0.73	-0.6
1,571,349	+		EFB2_01502	0.73	-0.1
1,571,350	-		EFB2_01502	0.73	-3.3
1,571,350	-		EFB2_01502	0.73	-2.4
1,571,351	+		EFB2_01502	0.74	+1.4
1,571,351	+		EFB2_01502	0.74	+0.7
1,571,351	+		EFB2_01502	0.74	-0.7
1,571,351	+		EFB2_01502	0.74	-1.4
1,571,352	-		EFB2_01502	0.74	-0.4
1,571,352	-		EFB2_01502	0.74	+1.3
1,571,352	-		EFB2_01502	0.74	-0.1
1,571,352	-		EFB2_01502	0.74	-0.4
1,571,352	-		EFB2_01502	0.74	-0.4
1,571,352	-		EFB2_01502	0.74	+0.6
1,571,398	+		EFB2_01502	0.79	+1.3
1,571,398	+		EFB2_01502	0.79	+0.8
1,571,398	+		EFB2_01502	0.79	+2.7
1,571,398	+		EFB2_01502	0.79	+0.6
1,571,399	-		EFB2_01502	0.79	-2.8
1,571,399	-		EFB2_01502	0.79	+0.5
1,571,402	+		EFB2_01502	0.79	-0.5
1,571,402	+		EFB2_01502	0.79	-1.3
1,571,402	+		EFB2_01502	0.79	-0.7
1,571,402	+		EFB2_01502	0.79	+0.4
1,571,402	+		EFB2_01502	0.79	+1.6
1,571,403	-		EFB2_01502	0.79	-1.5
1,571,403	-		EFB2_01502	0.79	-1.9
1,571,443	+		EFB2_01502	0.83	+0.6
1,571,444	-		EFB2_01502	0.83	-2.5
1,571,484	-		EFB2_01502	0.88	-2.3
1,571,484	-		EFB2_01502	0.88	+1.4
1,571,498	+		EFB2_01502	0.89	-1.9
1,571,505	+		EFB2_01502	0.90	-2.3
1,571,506	-				-0.1
1,571,519	+				+1.2
1,571,520	-				-2.0
1,571,542	+				-0.1
1,571,577	+				-1.7
1,571,578	-				+3.0
1,571,602	+				-0.2
1,571,603	-				+1.1
1,571,603	-				-0.2
1,571,603	-				+0.4
1,571,611	+				+0.5
1,571,612	-				-1.0
1,571,612	-				+3.2
1,571,624	+				-1.1
1,571,625	-				+1.1
1,571,682	+				-0.9
1,571,682	+				+0.7
1,571,683	-				+1.6
1,571,683	-				+0.9
1,571,711	+				-2.5
1,571,711	+				-0.9
1,571,712	-				-2.5
1,571,712	-				-1.3
1,571,714	+				-1.7
1,571,714	+				-2.5
1,571,714	+				-1.6
1,571,714	+				-0.5
1,571,714	+				+0.9
1,571,714	+				-0.6
1,571,715	-				+0.4
1,571,715	-				-2.6
1,571,715	-				-2.6
1,571,715	-				+0.0
1,571,715	-				+1.8
1,571,715	-				+0.2
1,571,715	-				-0.6
1,571,715	-				+0.5
1,571,715	-				-2.4
1,571,715	-				-0.2
1,571,719	-				-1.4
1,571,719	-				-2.3
1,571,725	-				-3.0
1,571,769	+				+0.2
1,571,770	-				+0.6
1,571,773	-				-0.1
1,571,791	-		EFB2_01503	0.10	+1.4
1,571,791	-		EFB2_01503	0.10	-2.6
1,571,839	+		EFB2_01503	0.14	+0.3
1,571,839	+		EFB2_01503	0.14	+0.4
1,571,840	-		EFB2_01503	0.14	-2.0
1,571,840	-		EFB2_01503	0.14	+0.4
1,571,840	-		EFB2_01503	0.14	-2.4
1,571,840	-		EFB2_01503	0.14	-0.2
1,571,840	-		EFB2_01503	0.14	+2.4
1,571,840	-		EFB2_01503	0.14	+1.4
1,571,860	+		EFB2_01503	0.16	-1.1
1,571,860	+		EFB2_01503	0.16	-2.4
1,571,860	+		EFB2_01503	0.16	+0.4
1,571,861	-		EFB2_01503	0.16	-3.0
1,571,861	-		EFB2_01503	0.16	+0.1
1,571,861	-		EFB2_01503	0.16	+0.4
1,571,863	+		EFB2_01503	0.16	-0.5
1,571,864	-		EFB2_01503	0.17	-0.6
1,571,871	+		EFB2_01503	0.17	-2.9
1,571,871	+		EFB2_01503	0.17	-1.3
1,571,906	+		EFB2_01503	0.20	+0.6
1,571,907	-		EFB2_01503	0.20	+1.4
1,571,923	-		EFB2_01503	0.22	+0.4
1,571,930	+		EFB2_01503	0.22	+2.7
1,571,941	-		EFB2_01503	0.23	-1.9
1,571,941	-		EFB2_01503	0.23	-2.6
1,571,963	+		EFB2_01503	0.25	-2.8
1,571,964	-		EFB2_01503	0.25	+3.4
1,571,964	-		EFB2_01503	0.25	-1.0
1,571,986	-		EFB2_01503	0.27	+0.8
1,571,986	-		EFB2_01503	0.27	-0.1
1,572,021	-		EFB2_01503	0.30	-3.2
1,572,042	+		EFB2_01503	0.32	+0.9
1,572,042	+		EFB2_01503	0.32	-3.0
1,572,042	+		EFB2_01503	0.32	-0.6
1,572,042	+		EFB2_01503	0.32	-0.4
1,572,042	+		EFB2_01503	0.32	+1.5
1,572,042	+		EFB2_01503	0.32	+0.9
1,572,042	+		EFB2_01503	0.32	+0.7
1,572,042	+		EFB2_01503	0.32	-1.3
1,572,043	-		EFB2_01503	0.32	-2.2
1,572,043	-		EFB2_01503	0.32	+0.0
1,572,043	-		EFB2_01503	0.32	+0.9
1,572,043	-		EFB2_01503	0.32	-2.0
1,572,043	-		EFB2_01503	0.32	+2.4
1,572,043	-		EFB2_01503	0.32	+1.4
1,572,043	-		EFB2_01503	0.32	-1.9
1,572,044	+		EFB2_01503	0.32	-1.1
1,572,044	+		EFB2_01503	0.32	-0.4
1,572,044	+		EFB2_01503	0.32	+0.2
1,572,044	+		EFB2_01503	0.32	-1.0
1,572,044	+		EFB2_01503	0.32	-2.9
1,572,044	+		EFB2_01503	0.32	+1.4
1,572,044	+		EFB2_01503	0.32	-0.6
1,572,044	+		EFB2_01503	0.32	+1.4
1,572,044	+		EFB2_01503	0.32	-2.1
1,572,044	+		EFB2_01503	0.32	-1.6
1,572,044	+		EFB2_01503	0.32	+0.3
1,572,044	+		EFB2_01503	0.32	-1.6
1,572,044	+		EFB2_01503	0.32	+2.6
1,572,044	+		EFB2_01503	0.32	-0.7
1,572,044	+		EFB2_01503	0.32	-1.4
1,572,044	+		EFB2_01503	0.32	-1.0
1,572,044	+		EFB2_01503	0.32	-1.6
1,572,044	+		EFB2_01503	0.32	+0.5
1,572,044	+		EFB2_01503	0.32	-2.3
1,572,044	+		EFB2_01503	0.32	-3.3
1,572,044	+		EFB2_01503	0.32	+0.0
1,572,045	-		EFB2_01503	0.32	-0.5
1,572,045	-		EFB2_01503	0.32	-1.1
1,572,045	-		EFB2_01503	0.32	+0.1
1,572,045	-		EFB2_01503	0.32	-1.7
1,572,045	-		EFB2_01503	0.32	+1.0
1,572,045	-		EFB2_01503	0.32	-1.0
1,572,045	-		EFB2_01503	0.32	-2.4
1,572,045	-		EFB2_01503	0.32	-1.9
1,572,045	-		EFB2_01503	0.32	-2.5
1,572,045	-		EFB2_01503	0.32	-1.2
1,572,045	-		EFB2_01503	0.32	+0.4
1,572,045	-		EFB2_01503	0.32	+2.0
1,572,045	-		EFB2_01503	0.32	+1.4
1,572,045	-		EFB2_01503	0.32	-2.9
1,572,045	-		EFB2_01503	0.32	+1.5
1,572,045	-		EFB2_01503	0.32	+1.0
1,572,046	+		EFB2_01503	0.32	-1.2
1,572,046	+		EFB2_01503	0.32	+1.1
1,572,046	+		EFB2_01503	0.32	+1.0
1,572,046	+		EFB2_01503	0.32	-1.1
1,572,046	+		EFB2_01503	0.32	-0.1
1,572,046	+		EFB2_01503	0.32	+0.4
1,572,046	+		EFB2_01503	0.32	+1.3
1,572,046	+		EFB2_01503	0.32	-0.3
1,572,046	+		EFB2_01503	0.32	+0.9
1,572,046	+		EFB2_01503	0.32	+1.2
1,572,046	+		EFB2_01503	0.32	+0.4
1,572,046	+		EFB2_01503	0.32	-1.9
1,572,046	+		EFB2_01503	0.32	+0.9
1,572,047	-		EFB2_01503	0.33	-0.2
1,572,047	-		EFB2_01503	0.33	-0.1
1,572,047	-		EFB2_01503	0.33	-0.1
1,572,047	-		EFB2_01503	0.33	-1.4
1,572,047	-		EFB2_01503	0.33	-2.1
1,572,047	-		EFB2_01503	0.33	+0.9
1,572,047	-		EFB2_01503	0.33	+0.2
1,572,047	-		EFB2_01503	0.33	-1.4
1,572,047	-		EFB2_01503	0.33	-1.7
1,572,047	-		EFB2_01503	0.33	+0.1
1,572,047	-		EFB2_01503	0.33	-0.6
1,572,047	-		EFB2_01503	0.33	-1.6
1,572,072	+		EFB2_01503	0.35	+2.2
1,572,072	+		EFB2_01503	0.35	-2.5
1,572,073	-		EFB2_01503	0.35	+0.8
1,572,084	-		EFB2_01503	0.36	+0.1
1,572,084	-		EFB2_01503	0.36	-2.8
1,572,100	+		EFB2_01503	0.37	+1.3
1,572,105	+		EFB2_01503	0.38	+1.1
1,572,177	+		EFB2_01503	0.44	-0.9
1,572,177	+		EFB2_01503	0.44	-1.4
1,572,177	+		EFB2_01503	0.44	-1.1
1,572,178	-		EFB2_01503	0.44	-0.1
1,572,178	-		EFB2_01503	0.44	-1.0
1,572,208	+		EFB2_01503	0.47	+0.4
1,572,209	-		EFB2_01503	0.47	-0.4
1,572,209	-		EFB2_01503	0.47	+0.9
1,572,209	-		EFB2_01503	0.47	+0.3
1,572,212	+		EFB2_01503	0.47	-0.1
1,572,213	-		EFB2_01503	0.47	+1.1
1,572,213	-		EFB2_01503	0.47	+0.6
1,572,224	+		EFB2_01503	0.48	+3.2
1,572,224	+		EFB2_01503	0.48	-2.1
1,572,239	-		EFB2_01503	0.49	+1.3
1,572,277	-		EFB2_01503	0.53	+1.9
1,572,278	+		EFB2_01503	0.53	-0.9
1,572,278	+		EFB2_01503	0.53	+1.4
1,572,278	+		EFB2_01503	0.53	+4.0
1,572,279	-		EFB2_01503	0.53	+1.3
1,572,279	-		EFB2_01503	0.53	+0.0
1,572,279	-		EFB2_01503	0.53	+0.3
1,572,279	-		EFB2_01503	0.53	-1.4
1,572,279	-		EFB2_01503	0.53	-2.3
1,572,279	-		EFB2_01503	0.53	-2.8
1,572,328	+		EFB2_01503	0.57	+1.1
1,572,328	+		EFB2_01503	0.57	-0.9
1,572,328	+		EFB2_01503	0.57	-1.7
1,572,328	+		EFB2_01503	0.57	+1.7
1,572,328	+		EFB2_01503	0.57	+0.7
1,572,328	+		EFB2_01503	0.57	+1.6
1,572,328	+		EFB2_01503	0.57	-1.9
1,572,328	+		EFB2_01503	0.57	-1.0
1,572,328	+		EFB2_01503	0.57	+0.9
1,572,328	+		EFB2_01503	0.57	+0.6
1,572,328	+		EFB2_01503	0.57	+1.4
1,572,328	+		EFB2_01503	0.57	+2.5
1,572,328	+		EFB2_01503	0.57	+0.4
1,572,328	+		EFB2_01503	0.57	-0.6
1,572,328	+		EFB2_01503	0.57	-0.1
1,572,328	+		EFB2_01503	0.57	-2.5
1,572,329	-		EFB2_01503	0.57	-1.1
1,572,329	-		EFB2_01503	0.57	+2.3
1,572,329	-		EFB2_01503	0.57	-1.3
1,572,329	-		EFB2_01503	0.57	-2.3
1,572,329	-		EFB2_01503	0.57	-1.4
1,572,329	-		EFB2_01503	0.57	+0.1
1,572,329	-		EFB2_01503	0.57	+0.8
1,572,329	-		EFB2_01503	0.57	+0.9
1,572,329	-		EFB2_01503	0.57	+0.1
1,572,329	-		EFB2_01503	0.57	-2.6
1,572,329	-		EFB2_01503	0.57	+1.3
1,572,329	-		EFB2_01503	0.57	-0.7
1,572,329	-		EFB2_01503	0.57	-2.8
1,572,329	-		EFB2_01503	0.57	+2.4
1,572,329	-		EFB2_01503	0.57	+1.3
1,572,329	-		EFB2_01503	0.57	-1.4
1,572,330	+		EFB2_01503	0.57	+1.0
1,572,331	-		EFB2_01503	0.57	+0.6
1,572,331	-		EFB2_01503	0.57	-2.5
1,572,331	-		EFB2_01503	0.57	+0.1
1,572,331	-		EFB2_01503	0.57	+1.4
1,572,331	-		EFB2_01503	0.57	+1.9
1,572,331	-		EFB2_01503	0.57	+0.6
1,572,376	+		EFB2_01503	0.61	-0.6
1,572,376	+		EFB2_01503	0.61	+2.4
1,572,376	+		EFB2_01503	0.61	-1.3
1,572,376	+		EFB2_01503	0.61	-0.4
1,572,377	-		EFB2_01503	0.61	+2.8
1,572,377	-		EFB2_01503	0.61	+0.1
1,572,377	-		EFB2_01503	0.61	-1.9
1,572,377	-		EFB2_01503	0.61	-1.7
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