Strain Fitness in Escherichia fergusonii Becca around EFB2_01349

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
1,397,890	+				-1.3
1,397,893	+				-1.1
1,397,897	-				-2.9
1,397,903	+				-0.1
1,397,923	+				+0.1
1,397,924	-				-2.3
1,397,924	-				+0.5
1,397,943	-				+1.4
1,397,954	+				-2.8
1,397,955	-				-2.1
1,397,965	+		EFB2_01348	0.11	-0.6
1,397,965	+		EFB2_01348	0.11	-1.0
1,397,966	-		EFB2_01348	0.11	+2.2
1,397,966	-		EFB2_01348	0.11	-0.7
1,397,967	+		EFB2_01348	0.11	+0.9
1,397,967	+		EFB2_01348	0.11	-0.7
1,397,967	+		EFB2_01348	0.11	+0.2
1,397,967	+		EFB2_01348	0.11	-1.3
1,397,967	+		EFB2_01348	0.11	-2.1
1,397,967	+		EFB2_01348	0.11	+1.1
1,397,967	+		EFB2_01348	0.11	+0.7
1,397,968	-		EFB2_01348	0.11	-0.4
1,397,968	-		EFB2_01348	0.11	-2.5
1,397,968	-		EFB2_01348	0.11	-2.4
1,397,968	-		EFB2_01348	0.11	+0.9
1,397,968	-		EFB2_01348	0.11	+1.8
1,397,968	-		EFB2_01348	0.11	+1.2
1,397,986	-		EFB2_01348	0.13	+1.4
1,397,986	-		EFB2_01348	0.13	-0.5
1,397,988	+		EFB2_01348	0.13	-2.8
1,397,988	+		EFB2_01348	0.13	-1.5
1,397,989	-		EFB2_01348	0.13	-0.2
1,398,037	+		EFB2_01348	0.18	+1.0
1,398,044	-		EFB2_01348	0.19	+3.6
1,398,044	-		EFB2_01348	0.19	+1.1
1,398,044	-		EFB2_01348	0.19	-2.2
1,398,044	-		EFB2_01348	0.19	-2.9
1,398,049	+		EFB2_01348	0.19	-1.5
1,398,050	-		EFB2_01348	0.19	+0.8
1,398,050	-		EFB2_01348	0.19	-1.8
1,398,050	-		EFB2_01348	0.19	+0.7
1,398,050	-		EFB2_01348	0.19	+0.8
1,398,059	+		EFB2_01348	0.20	+1.3
1,398,060	-		EFB2_01348	0.20	+0.1
1,398,060	-		EFB2_01348	0.20	-1.9
1,398,073	+		EFB2_01348	0.22	+0.3
1,398,075	-		EFB2_01348	0.22	+0.4
1,398,090	-		EFB2_01348	0.23	-2.6
1,398,116	+		EFB2_01348	0.26	+0.2
1,398,117	-		EFB2_01348	0.26	-2.6
1,398,131	+		EFB2_01348	0.28	+1.1
1,398,131	+		EFB2_01348	0.28	-1.9
1,398,131	+		EFB2_01348	0.28	-0.6
1,398,132	-		EFB2_01348	0.28	+0.7
1,398,132	-		EFB2_01348	0.28	+1.2
1,398,132	-		EFB2_01348	0.28	-0.4
1,398,132	-		EFB2_01348	0.28	-1.3
1,398,211	-		EFB2_01348	0.36	-0.5
1,398,221	+		EFB2_01348	0.37	-0.9
1,398,221	+		EFB2_01348	0.37	+1.1
1,398,221	+		EFB2_01348	0.37	-1.0
1,398,222	-		EFB2_01348	0.37	-2.3
1,398,222	-		EFB2_01348	0.37	-0.7
1,398,222	-		EFB2_01348	0.37	+2.2
1,398,225	-		EFB2_01348	0.37	+1.7
1,398,225	-		EFB2_01348	0.37	-3.9
1,398,242	+		EFB2_01348	0.39	+0.9
1,398,243	-		EFB2_01348	0.39	+0.7
1,398,243	-		EFB2_01348	0.39	-0.2
1,398,243	-		EFB2_01348	0.39	-0.2
1,398,246	+		EFB2_01348	0.39	-0.5
1,398,246	+		EFB2_01348	0.39	+2.1
1,398,246	+		EFB2_01348	0.39	+0.1
1,398,246	+		EFB2_01348	0.39	+0.4
1,398,247	-		EFB2_01348	0.39	+0.5
1,398,247	-		EFB2_01348	0.39	+1.0
1,398,247	-		EFB2_01348	0.39	+2.1
1,398,247	-		EFB2_01348	0.39	-0.5
1,398,258	+		EFB2_01348	0.41	-2.0
1,398,395	+		EFB2_01348	0.54	-2.5
1,398,395	+		EFB2_01348	0.54	-2.6
1,398,396	-		EFB2_01348	0.55	-2.1
1,398,396	-		EFB2_01348	0.55	+1.1
1,398,413	-		EFB2_01348	0.56	+0.3
1,398,415	+		EFB2_01348	0.57	+2.6
1,398,416	-		EFB2_01348	0.57	-2.0
1,398,416	-		EFB2_01348	0.57	-0.3
1,398,449	+		EFB2_01348	0.60	+0.6
1,398,473	+		EFB2_01348	0.62	+0.1
1,398,474	-		EFB2_01348	0.62	-0.7
1,398,531	-		EFB2_01348	0.68	+0.2
1,398,566	-		EFB2_01348	0.72	+1.0
1,398,574	+		EFB2_01348	0.73	+0.4
1,398,574	+		EFB2_01348	0.73	+0.5
1,398,578	+		EFB2_01348	0.73	+0.9
1,398,578	+		EFB2_01348	0.73	+0.3
1,398,579	-		EFB2_01348	0.73	-1.4
1,398,579	-		EFB2_01348	0.73	+3.3
1,398,579	-		EFB2_01348	0.73	+0.1
1,398,579	-		EFB2_01348	0.73	-1.0
1,398,620	+		EFB2_01348	0.77	+0.1
1,398,620	+		EFB2_01348	0.77	+1.3
1,398,620	+		EFB2_01348	0.77	-0.4
1,398,620	+		EFB2_01348	0.77	+0.6
1,398,621	-		EFB2_01348	0.77	+0.9
1,398,680	+		EFB2_01348	0.83	+1.9
1,398,680	+		EFB2_01348	0.83	-0.0
1,398,680	+		EFB2_01348	0.83	-1.6
1,398,681	-		EFB2_01348	0.84	-0.4
1,398,714	-		EFB2_01348	0.87	+1.4
1,398,737	+		EFB2_01348	0.89	+1.3
1,398,738	-		EFB2_01348	0.89	-0.3
1,398,783	+				-0.7
1,398,783	+				-1.7
1,398,783	+				+1.7
1,398,783	+				-0.2
1,398,783	+				-0.4
1,398,783	+				-3.5
1,398,784	-				-1.8
1,398,784	-				-0.5
1,398,784	-				+0.6
1,398,784	-				+1.9
1,398,785	+				+0.5
1,398,785	+				-0.5
1,398,785	+				-3.4
1,398,785	+				+2.6
1,398,786	-				-2.6
1,398,804	-				-0.8
1,398,840	+				-2.0
1,398,840	+				-1.5
1,398,864	+				+0.5
1,398,864	+				-3.6
1,398,864	+				+0.1
1,398,864	+				+0.1
1,398,864	+				-0.8
1,398,864	+				-0.7
1,398,864	+				+0.6
1,398,864	+				-3.5
1,398,865	-				-1.9
1,398,865	-				+1.8
1,398,865	-				-1.0
1,398,865	-				+0.5
1,398,865	-				-0.2
1,398,865	-				-2.3
1,398,865	-				+2.6
1,398,915	+				-0.6
1,398,915	+				-1.1
1,398,916	-				+1.4
1,398,916	-				+2.4
1,398,916	-				+0.3
1,398,966	+				+2.4
1,398,966	+				-3.1
1,398,966	+				-1.9
1,398,967	-				-0.6
1,398,967	-				-3.9
1,398,967	-				-2.7
1,399,062	+		EFB2_01349	0.13	+0.4
1,399,062	+		EFB2_01349	0.13	-0.4
1,399,063	-		EFB2_01349	0.13	-0.2
1,399,101	+		EFB2_01349	0.16	+1.1
1,399,101	+		EFB2_01349	0.16	-2.8
1,399,101	+		EFB2_01349	0.16	+2.0
1,399,101	+		EFB2_01349	0.16	+0.3
1,399,102	-		EFB2_01349	0.16	+1.0
1,399,102	-		EFB2_01349	0.16	-0.7
1,399,102	-		EFB2_01349	0.16	-1.6
1,399,102	-		EFB2_01349	0.16	+1.9
1,399,102	-		EFB2_01349	0.16	-3.7
1,399,102	-		EFB2_01349	0.16	+1.5
1,399,154	+		EFB2_01349	0.19	-3.4
1,399,154	+		EFB2_01349	0.19	-2.0
1,399,154	+		EFB2_01349	0.19	-0.1
1,399,154	+		EFB2_01349	0.19	+1.1
1,399,154	+		EFB2_01349	0.19	+0.1
1,399,154	+		EFB2_01349	0.19	-0.4
1,399,155	-		EFB2_01349	0.19	-1.1
1,399,155	-		EFB2_01349	0.19	+2.6
1,399,155	-		EFB2_01349	0.19	-1.4
1,399,155	-		EFB2_01349	0.19	-0.6
1,399,155	-		EFB2_01349	0.19	+0.1
1,399,155	-		EFB2_01349	0.19	-0.6
1,399,155	-		EFB2_01349	0.19	-3.0
1,399,155	-		EFB2_01349	0.19	-2.3
1,399,231	+		EFB2_01349	0.24	-1.2
1,399,232	-		EFB2_01349	0.24	+0.1
1,399,232	-		EFB2_01349	0.24	-0.1
1,399,287	+		EFB2_01349	0.28	+2.4
1,399,288	-		EFB2_01349	0.28	+1.3
1,399,288	-		EFB2_01349	0.28	-1.6
1,399,313	+		EFB2_01349	0.30	-0.2
1,399,313	+		EFB2_01349	0.30	+0.9
1,399,313	+		EFB2_01349	0.30	-0.1
1,399,313	+		EFB2_01349	0.30	+0.1
1,399,313	+		EFB2_01349	0.30	+0.5
1,399,314	-		EFB2_01349	0.30	-0.9
1,399,314	-		EFB2_01349	0.30	-0.2
1,399,314	-		EFB2_01349	0.30	-3.0
1,399,314	-		EFB2_01349	0.30	+0.8
1,399,314	-		EFB2_01349	0.30	+0.1
1,399,314	-		EFB2_01349	0.30	+3.7
1,399,314	-		EFB2_01349	0.30	+0.4
1,399,314	-		EFB2_01349	0.30	-3.4
1,399,314	-		EFB2_01349	0.30	-2.0
1,399,474	+		EFB2_01349	0.40	-0.5
1,399,474	+		EFB2_01349	0.40	+0.9
1,399,474	+		EFB2_01349	0.40	-2.3
1,399,474	+		EFB2_01349	0.40	+0.9
1,399,474	+		EFB2_01349	0.40	+1.9
1,399,474	+		EFB2_01349	0.40	+0.9
1,399,474	+		EFB2_01349	0.40	-2.3
1,399,474	+		EFB2_01349	0.40	-2.1
1,399,474	+		EFB2_01349	0.40	+1.7
1,399,474	+		EFB2_01349	0.40	+2.0
1,399,474	+		EFB2_01349	0.40	-3.1
1,399,474	+		EFB2_01349	0.40	+0.6
1,399,474	+		EFB2_01349	0.40	-1.0
1,399,475	-		EFB2_01349	0.40	-2.5
1,399,475	-		EFB2_01349	0.40	-1.8
1,399,475	-		EFB2_01349	0.40	-0.1
1,399,475	-		EFB2_01349	0.40	-1.0
1,399,475	-		EFB2_01349	0.40	-0.8
1,399,475	-		EFB2_01349	0.40	-3.4
1,399,475	-		EFB2_01349	0.40	-1.7
1,399,475	-		EFB2_01349	0.40	-1.0
1,399,475	-		EFB2_01349	0.40	-0.2
1,399,575	+		EFB2_01349	0.47	-2.6
1,399,575	+		EFB2_01349	0.47	+0.2
1,399,575	+		EFB2_01349	0.47	-3.8
1,399,575	+		EFB2_01349	0.47	-2.3
1,399,575	+		EFB2_01349	0.47	+0.0
1,399,575	+		EFB2_01349	0.47	+0.1
1,399,575	+		EFB2_01349	0.47	+2.3
1,399,575	+		EFB2_01349	0.47	-0.2
1,399,575	+		EFB2_01349	0.47	-2.0
1,399,575	+		EFB2_01349	0.47	+0.5
1,399,576	-		EFB2_01349	0.47	+0.4
1,399,576	-		EFB2_01349	0.47	-1.1
1,399,576	-		EFB2_01349	0.47	-2.4
1,399,576	-		EFB2_01349	0.47	+2.4
1,399,576	-		EFB2_01349	0.47	+1.0
1,399,576	-		EFB2_01349	0.47	-0.3
1,399,576	-		EFB2_01349	0.47	+1.3
1,399,576	-		EFB2_01349	0.47	-0.5
1,399,576	-		EFB2_01349	0.47	+0.8
1,399,584	+		EFB2_01349	0.48	-1.4
1,399,584	+		EFB2_01349	0.48	-1.9
1,399,584	+		EFB2_01349	0.48	-1.4
1,399,584	+		EFB2_01349	0.48	-0.4
1,399,584	+		EFB2_01349	0.48	-2.5
1,399,584	+		EFB2_01349	0.48	-0.9
1,399,584	+		EFB2_01349	0.48	-3.8
1,399,584	+		EFB2_01349	0.48	-0.8
1,399,584	+		EFB2_01349	0.48	-3.8
1,399,584	+		EFB2_01349	0.48	+0.7
1,399,584	+		EFB2_01349	0.48	+1.0
1,399,584	+		EFB2_01349	0.48	+1.9
1,399,584	+		EFB2_01349	0.48	+2.4
1,399,584	+		EFB2_01349	0.48	+1.2
1,399,584	+		EFB2_01349	0.48	+1.4
1,399,584	+		EFB2_01349	0.48	-1.8
1,399,584	+		EFB2_01349	0.48	-0.5
1,399,584	+		EFB2_01349	0.48	-1.4
1,399,584	+		EFB2_01349	0.48	+1.1
1,399,584	+		EFB2_01349	0.48	+0.1
1,399,585	-		EFB2_01349	0.48	+0.6
1,399,585	-		EFB2_01349	0.48	+1.6
1,399,585	-		EFB2_01349	0.48	-2.4
1,399,585	-		EFB2_01349	0.48	-2.8
1,399,585	-		EFB2_01349	0.48	-1.6
1,399,585	-		EFB2_01349	0.48	-1.4
1,399,585	-		EFB2_01349	0.48	+1.6
1,399,585	-		EFB2_01349	0.48	+1.7
1,399,585	-		EFB2_01349	0.48	+0.3
1,399,585	-		EFB2_01349	0.48	-0.7
1,399,585	-		EFB2_01349	0.48	+0.5
1,399,585	-		EFB2_01349	0.48	+2.1
1,399,585	-		EFB2_01349	0.48	+0.1
1,399,585	-		EFB2_01349	0.48	+1.1
1,399,585	-		EFB2_01349	0.48	-2.5
1,399,585	-		EFB2_01349	0.48	+0.2
1,399,596	-		EFB2_01349	0.48	-0.1
1,399,620	+		EFB2_01349	0.50	-1.4
1,399,621	-		EFB2_01349	0.50	-3.2
1,399,621	-		EFB2_01349	0.50	-1.3
1,399,680	-		EFB2_01349	0.54	+0.1
1,399,686	+		EFB2_01349	0.54	-0.6
1,399,687	-		EFB2_01349	0.54	+0.9
1,399,687	-		EFB2_01349	0.54	+1.7
1,399,687	-		EFB2_01349	0.54	-0.4
1,399,704	+		EFB2_01349	0.55	-2.1
1,399,713	+		EFB2_01349	0.56	-0.2
1,399,713	+		EFB2_01349	0.56	+0.3
1,399,714	-		EFB2_01349	0.56	-0.4
1,399,714	-		EFB2_01349	0.56	+0.4
1,399,714	-		EFB2_01349	0.56	+0.5
1,399,719	-		EFB2_01349	0.56	+1.6
1,399,719	-		EFB2_01349	0.56	-2.0
1,399,719	-		EFB2_01349	0.56	+0.5
1,399,804	+		EFB2_01349	0.62	-1.6
1,399,804	+		EFB2_01349	0.62	+1.9
1,399,804	+		EFB2_01349	0.62	-0.6
1,399,804	+		EFB2_01349	0.62	-2.0
1,399,804	+		EFB2_01349	0.62	+2.2
1,399,804	+		EFB2_01349	0.62	-1.1
1,399,804	+		EFB2_01349	0.62	+0.6
1,399,804	+		EFB2_01349	0.62	+1.3
1,399,804	+		EFB2_01349	0.62	-1.3
1,399,804	+		EFB2_01349	0.62	+0.8
1,399,804	+		EFB2_01349	0.62	-2.0
1,399,804	+		EFB2_01349	0.62	+2.2
1,399,804	+		EFB2_01349	0.62	+2.4
1,399,804	+		EFB2_01349	0.62	-2.1
1,399,804	+		EFB2_01349	0.62	+1.7
1,399,804	+		EFB2_01349	0.62	+1.7
1,399,805	-		EFB2_01349	0.62	+0.7
1,399,805	-		EFB2_01349	0.62	+1.8
1,399,805	-		EFB2_01349	0.62	+1.4
1,399,805	-		EFB2_01349	0.62	+1.0
1,399,805	-		EFB2_01349	0.62	-0.0
1,399,805	-		EFB2_01349	0.62	+0.6
1,399,805	-		EFB2_01349	0.62	+0.3
1,399,805	-		EFB2_01349	0.62	-0.7
1,399,805	-		EFB2_01349	0.62	+1.1
1,399,805	-		EFB2_01349	0.62	+0.3
1,399,805	-		EFB2_01349	0.62	+1.7
1,399,885	+		EFB2_01349	0.67	-0.6
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