Strain Fitness in Escherichia fergusonii Becca around EFB2_01154

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
1,210,804	-		EFB2_01153	0.47	-0.2
1,210,909	+		EFB2_01153	0.52	-0.1
1,210,909	+		EFB2_01153	0.52	-2.5
1,210,959	+		EFB2_01153	0.55	+0.1
1,210,959	+		EFB2_01153	0.55	+2.1
1,210,959	+		EFB2_01153	0.55	+1.4
1,210,959	+		EFB2_01153	0.55	+0.7
1,210,959	+		EFB2_01153	0.55	-1.4
1,210,959	+		EFB2_01153	0.55	-0.4
1,210,959	+		EFB2_01153	0.55	-0.8
1,210,959	+		EFB2_01153	0.55	+1.1
1,210,959	+		EFB2_01153	0.55	+0.7
1,210,959	+		EFB2_01153	0.55	+0.4
1,210,959	+		EFB2_01153	0.55	-1.4
1,210,959	+		EFB2_01153	0.55	+1.3
1,210,960	-		EFB2_01153	0.55	-0.8
1,210,960	-		EFB2_01153	0.55	-2.0
1,210,960	-		EFB2_01153	0.55	-2.1
1,210,960	-		EFB2_01153	0.55	+2.5
1,210,960	-		EFB2_01153	0.55	+1.6
1,210,960	-		EFB2_01153	0.55	-0.8
1,210,960	-		EFB2_01153	0.55	+0.9
1,210,960	-		EFB2_01153	0.55	-1.7
1,210,960	-		EFB2_01153	0.55	-1.6
1,210,960	-		EFB2_01153	0.55	+2.2
1,210,960	-		EFB2_01153	0.55	-2.0
1,211,017	+		EFB2_01153	0.58	+0.8
1,211,018	-		EFB2_01153	0.58	-1.3
1,211,018	-		EFB2_01153	0.58	+0.4
1,211,025	+		EFB2_01153	0.59	-1.1
1,211,026	-		EFB2_01153	0.59	+0.1
1,211,026	-		EFB2_01153	0.59	+1.1
1,211,026	-		EFB2_01153	0.59	-1.8
1,211,026	-		EFB2_01153	0.59	+1.8
1,211,026	-		EFB2_01153	0.59	+2.0
1,211,026	-		EFB2_01153	0.59	+1.2
1,211,096	+		EFB2_01153	0.63	+0.5
1,211,097	-		EFB2_01153	0.63	+0.2
1,211,127	+		EFB2_01153	0.65	+0.7
1,211,127	+		EFB2_01153	0.65	+0.8
1,211,127	+		EFB2_01153	0.65	-1.7
1,211,128	-		EFB2_01153	0.65	-0.4
1,211,128	-		EFB2_01153	0.65	-2.7
1,211,175	-		EFB2_01153	0.67	+1.2
1,211,288	+		EFB2_01153	0.73	+1.9
1,211,288	+		EFB2_01153	0.73	-1.1
1,211,288	+		EFB2_01153	0.73	-0.2
1,211,289	-		EFB2_01153	0.73	+1.9
1,211,289	-		EFB2_01153	0.73	+0.2
1,211,289	-		EFB2_01153	0.73	-0.2
1,211,289	-		EFB2_01153	0.73	+1.6
1,211,289	-		EFB2_01153	0.73	-1.2
1,211,289	-		EFB2_01153	0.73	-0.4
1,211,375	+		EFB2_01153	0.78	+1.6
1,211,375	+		EFB2_01153	0.78	-1.3
1,211,376	-		EFB2_01153	0.78	-0.5
1,211,376	-		EFB2_01153	0.78	-2.4
1,211,376	-		EFB2_01153	0.78	+1.6
1,211,419	+		EFB2_01153	0.81	-1.5
1,211,457	+		EFB2_01153	0.83	-0.0
1,211,457	+		EFB2_01153	0.83	+1.3
1,211,458	-		EFB2_01153	0.83	-2.6
1,211,478	+		EFB2_01153	0.84	-1.8
1,211,478	+		EFB2_01153	0.84	+3.2
1,211,478	+		EFB2_01153	0.84	+0.4
1,211,478	+		EFB2_01153	0.84	-0.8
1,211,478	+		EFB2_01153	0.84	+2.4
1,211,478	+		EFB2_01153	0.84	+0.7
1,211,478	+		EFB2_01153	0.84	-0.7
1,211,478	+		EFB2_01153	0.84	+3.2
1,211,479	-		EFB2_01153	0.84	-0.1
1,211,479	-		EFB2_01153	0.84	+0.3
1,211,479	-		EFB2_01153	0.84	+1.4
1,211,479	-		EFB2_01153	0.84	-2.6
1,211,479	-		EFB2_01153	0.84	+1.2
1,211,479	-		EFB2_01153	0.84	-1.7
1,211,548	+		EFB2_01153	0.88	-3.0
1,211,548	+		EFB2_01153	0.88	-0.9
1,211,548	+		EFB2_01153	0.88	+0.8
1,211,548	+		EFB2_01153	0.88	+1.4
1,211,548	+		EFB2_01153	0.88	-1.8
1,211,549	-		EFB2_01153	0.88	+0.4
1,211,613	+				+2.3
1,211,613	+				+1.0
1,211,613	+				-2.0
1,211,613	+				-2.2
1,211,613	+				+2.4
1,211,613	+				+0.0
1,211,613	+				-0.9
1,211,613	+				+0.8
1,211,613	+				+0.7
1,211,613	+				-1.3
1,211,613	+				-0.9
1,211,613	+				+0.6
1,211,613	+				-2.8
1,211,614	-				+1.1
1,211,614	-				-2.2
1,211,614	-				+0.4
1,211,614	-				+0.5
1,211,614	-				-2.9
1,211,614	-				+1.7
1,211,614	-				+1.2
1,211,614	-				+0.3
1,211,614	-				-1.6
1,211,614	-				-0.2
1,211,614	-				+1.0
1,211,614	-				-0.6
1,211,614	-				-0.4
1,211,614	-				-1.6
1,211,614	-				-0.6
1,211,614	-				-0.9
1,211,614	-				+1.2
1,211,614	-				-1.3
1,211,719	+				-1.2
1,211,720	-				+2.2
1,211,734	+				-2.9
1,211,735	-				-0.4
1,211,760	+				+0.1
1,211,760	+				+1.5
1,211,760	+				-2.5
1,211,760	+				-2.4
1,211,760	+				+0.3
1,211,761	-				+2.9
1,211,761	-				-1.9
1,211,761	-				-1.2
1,211,763	+				-1.9
1,211,763	+				-1.3
1,211,764	-				-2.5
1,211,764	-				-1.8
1,211,764	-				+2.2
1,211,843	+				+0.8
1,211,843	+				+0.7
1,211,844	-				-1.0
1,211,844	-				+2.4
1,211,844	-				+0.2
1,211,844	-				-2.2
1,211,844	-				-1.6
1,211,844	-				+1.3
1,211,871	+				-0.4
1,211,896	+				-0.3
1,211,897	-				-0.3
1,211,897	-				+0.1
1,211,897	-				-1.7
1,211,905	+				-0.8
1,211,936	+				-0.7
1,211,936	+				-1.8
1,211,936	+				+1.6
1,211,936	+				+0.2
1,211,936	+				+0.7
1,211,936	+				+0.4
1,211,936	+				+1.5
1,211,936	+				-0.8
1,211,936	+				+1.0
1,211,936	+				+0.5
1,211,936	+				-2.3
1,211,936	+				-2.8
1,211,936	+				+1.7
1,211,937	-		EFB2_01154	0.10	+1.1
1,211,937	-		EFB2_01154	0.10	-1.2
1,211,937	-		EFB2_01154	0.10	-1.6
1,211,937	-		EFB2_01154	0.10	-0.1
1,211,937	-		EFB2_01154	0.10	-0.9
1,211,937	-		EFB2_01154	0.10	-1.2
1,211,937	-		EFB2_01154	0.10	+2.2
1,211,937	-		EFB2_01154	0.10	-0.9
1,211,937	-		EFB2_01154	0.10	-0.6
1,211,937	-		EFB2_01154	0.10	+0.2
1,211,937	-		EFB2_01154	0.10	+0.4
1,211,937	-		EFB2_01154	0.10	-0.3
1,212,037	+		EFB2_01154	0.16	-0.4
1,212,043	+		EFB2_01154	0.16	-2.2
1,212,044	-		EFB2_01154	0.16	-1.9
1,212,089	+		EFB2_01154	0.19	+2.4
1,212,089	+		EFB2_01154	0.19	+1.3
1,212,089	+		EFB2_01154	0.19	-0.5
1,212,089	+		EFB2_01154	0.19	+0.1
1,212,089	+		EFB2_01154	0.19	-0.5
1,212,089	+		EFB2_01154	0.19	+1.5
1,212,089	+		EFB2_01154	0.19	+0.7
1,212,089	+		EFB2_01154	0.19	+1.3
1,212,089	+		EFB2_01154	0.19	+1.2
1,212,089	+		EFB2_01154	0.19	-2.7
1,212,089	+		EFB2_01154	0.19	-2.6
1,212,089	+		EFB2_01154	0.19	-3.1
1,212,089	+		EFB2_01154	0.19	-1.3
1,212,089	+		EFB2_01154	0.19	+0.9
1,212,089	+		EFB2_01154	0.19	+0.0
1,212,089	+		EFB2_01154	0.19	-2.5
1,212,089	+		EFB2_01154	0.19	+0.1
1,212,089	+		EFB2_01154	0.19	+1.1
1,212,089	+		EFB2_01154	0.19	-1.8
1,212,089	+		EFB2_01154	0.19	-3.8
1,212,089	+		EFB2_01154	0.19	-0.2
1,212,090	-		EFB2_01154	0.19	-2.1
1,212,090	-		EFB2_01154	0.19	+1.3
1,212,090	-		EFB2_01154	0.19	+1.4
1,212,090	-		EFB2_01154	0.19	+2.2
1,212,090	-		EFB2_01154	0.19	-0.4
1,212,090	-		EFB2_01154	0.19	-3.0
1,212,090	-		EFB2_01154	0.19	+1.3
1,212,090	-		EFB2_01154	0.19	+0.0
1,212,090	-		EFB2_01154	0.19	-0.2
1,212,090	-		EFB2_01154	0.19	-0.1
1,212,090	-		EFB2_01154	0.19	+1.4
1,212,090	-		EFB2_01154	0.19	-1.4
1,212,090	-		EFB2_01154	0.19	-1.8
1,212,090	-		EFB2_01154	0.19	+0.9
1,212,090	-		EFB2_01154	0.19	-2.5
1,212,090	-		EFB2_01154	0.19	+1.0
1,212,228	+		EFB2_01154	0.27	+1.1
1,212,228	+		EFB2_01154	0.27	+1.5
1,212,228	+		EFB2_01154	0.27	-0.9
1,212,228	+		EFB2_01154	0.27	+0.5
1,212,228	+		EFB2_01154	0.27	-0.8
1,212,228	+		EFB2_01154	0.27	+0.8
1,212,229	-		EFB2_01154	0.27	-2.0
1,212,229	-		EFB2_01154	0.27	-0.2
1,212,229	-		EFB2_01154	0.27	-2.3
1,212,229	-		EFB2_01154	0.27	-1.4
1,212,229	-		EFB2_01154	0.27	+0.6
1,212,229	-		EFB2_01154	0.27	+0.8
1,212,249	-		EFB2_01154	0.28	+4.2
1,212,275	+		EFB2_01154	0.30	+3.1
1,212,275	+		EFB2_01154	0.30	+0.5
1,212,275	+		EFB2_01154	0.30	+2.3
1,212,276	-		EFB2_01154	0.30	+2.4
1,212,276	-		EFB2_01154	0.30	-0.9
1,212,276	-		EFB2_01154	0.30	-1.2
1,212,276	-		EFB2_01154	0.30	+1.1
1,212,326	+		EFB2_01154	0.33	-3.6
1,212,327	-		EFB2_01154	0.33	-0.2
1,212,364	+		EFB2_01154	0.35	+0.8
1,212,395	+		EFB2_01154	0.37	+0.1
1,212,395	+		EFB2_01154	0.37	+0.4
1,212,395	+		EFB2_01154	0.37	-0.9
1,212,395	+		EFB2_01154	0.37	-1.8
1,212,395	+		EFB2_01154	0.37	+2.4
1,212,396	-		EFB2_01154	0.37	-0.2
1,212,396	-		EFB2_01154	0.37	-1.5
1,212,396	-		EFB2_01154	0.37	-2.9
1,212,406	+		EFB2_01154	0.37	-1.3
1,212,407	-		EFB2_01154	0.37	+0.7
1,212,423	+		EFB2_01154	0.38	+1.0
1,212,563	+		EFB2_01154	0.47	+2.1
1,212,563	+		EFB2_01154	0.47	+2.5
1,212,590	+		EFB2_01154	0.48	+0.2
1,212,590	+		EFB2_01154	0.48	+2.4
1,212,590	+		EFB2_01154	0.48	-3.0
1,212,591	-		EFB2_01154	0.48	+0.9
1,212,607	+		EFB2_01154	0.49	+1.5
1,212,607	+		EFB2_01154	0.49	+0.5
1,212,607	+		EFB2_01154	0.49	+0.7
1,212,607	+		EFB2_01154	0.49	-2.6
1,212,607	+		EFB2_01154	0.49	+0.1
1,212,607	+		EFB2_01154	0.49	+1.6
1,212,607	+		EFB2_01154	0.49	+1.2
1,212,608	-		EFB2_01154	0.49	-1.2
1,212,608	-		EFB2_01154	0.49	-0.2
1,212,670	+		EFB2_01154	0.53	+0.9
1,212,671	-		EFB2_01154	0.53	-0.5
1,212,689	+		EFB2_01154	0.54	-1.8
1,212,689	+		EFB2_01154	0.54	-1.4
1,212,689	+		EFB2_01154	0.54	-2.0
1,212,689	+		EFB2_01154	0.54	+1.7
1,212,690	-		EFB2_01154	0.54	-2.4
1,212,690	-		EFB2_01154	0.54	-2.2
1,212,690	-		EFB2_01154	0.54	-1.7
1,212,690	-		EFB2_01154	0.54	+2.1
1,212,721	+		EFB2_01154	0.56	+1.2
1,212,721	+		EFB2_01154	0.56	-2.3
1,212,721	+		EFB2_01154	0.56	+2.6
1,212,721	+		EFB2_01154	0.56	-1.8
1,212,722	-		EFB2_01154	0.56	-0.1
1,212,722	-		EFB2_01154	0.56	-2.1
1,212,722	-		EFB2_01154	0.56	-1.9
1,212,773	+		EFB2_01154	0.59	+1.0
1,212,773	+		EFB2_01154	0.59	+1.7
1,212,799	+		EFB2_01154	0.60	+2.4
1,212,799	+		EFB2_01154	0.60	-2.8
1,212,800	-		EFB2_01154	0.60	-1.8
1,212,800	-		EFB2_01154	0.60	-1.3
1,212,800	-		EFB2_01154	0.60	+2.5
1,212,800	-		EFB2_01154	0.60	-1.8
1,212,800	-		EFB2_01154	0.60	+0.4
1,212,800	-		EFB2_01154	0.60	-1.2
1,212,826	+		EFB2_01154	0.62	-1.4
1,212,826	+		EFB2_01154	0.62	-0.9
1,212,827	-		EFB2_01154	0.62	+0.2
1,212,827	-		EFB2_01154	0.62	+0.8
1,212,827	-		EFB2_01154	0.62	-2.3
1,212,827	-		EFB2_01154	0.62	+1.4
1,212,872	+		EFB2_01154	0.65	-0.9
1,212,940	+		EFB2_01154	0.69	+0.2
1,212,941	-		EFB2_01154	0.69	+0.8
1,213,126	+		EFB2_01154	0.79	+1.5
1,213,146	+		EFB2_01154	0.81	+0.3
1,213,147	-		EFB2_01154	0.81	+0.1
1,213,147	-		EFB2_01154	0.81	-0.8
1,213,177	+		EFB2_01154	0.82	-0.0
1,213,178	-		EFB2_01154	0.82	-2.3
1,213,178	-		EFB2_01154	0.82	+1.2
1,213,178	-		EFB2_01154	0.82	-1.8
1,213,178	-		EFB2_01154	0.82	-2.0
1,213,191	+		EFB2_01154	0.83	-2.1
1,213,265	+		EFB2_01154	0.88	+0.3
1,213,266	-		EFB2_01154	0.88	+1.6
1,213,316	+				-2.5
1,213,316	+				+1.1
1,213,317	-				-2.5
1,213,317	-				+1.1
1,213,317	-				-0.2
1,213,317	-				-1.7
1,213,417	+				-1.2
1,213,417	+				-0.1
1,213,418	-				+0.4
1,213,476	-				-0.5
1,213,495	+				+0.8
1,213,495	+				-0.4
1,213,495	+				+0.8
1,213,496	-				-0.7
1,213,496	-				-0.1
1,213,496	-				+2.4
1,213,496	-				+1.0
1,213,496	-				-0.3
1,213,496	-				-1.7
1,213,504	+				+1.1
1,213,504	+				-2.5
1,213,504	+				-0.9
1,213,504	+				+0.9
1,213,504	+				-0.9
1,213,504	+				+0.4
1,213,504	+				-1.6
1,213,504	+				-2.6
1,213,505	-				+0.4
1,213,513	+				+0.1
1,213,513	+				-2.4
1,213,513	+				-0.2
1,213,513	+				-1.4
1,213,513	+				+1.5
1,213,513	+				-0.2
1,213,513	+				-2.1
1,213,513	+				-3.3
1,213,513	+				-1.0
1,213,513	+				-2.8
1,213,513	+				-3.7
1,213,513	+				-1.7
1,213,513	+				+1.4
1,213,514	-				-0.6
1,213,514	-				-0.7
1,213,514	-				+1.0
1,213,514	-				-0.1
1,213,514	-				-0.9
1,213,514	-				-0.4
1,213,514	-				-2.1
1,213,514	-				-0.4
1,213,514	-				-2.3
1,213,550	+				-1.4
1,213,550	+				-3.3
1,213,550	+				+1.0
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