Strain Fitness in Escherichia fergusonii Becca around EFB2_01144

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
1,200,694	-		EFB2_01143	0.54	+0.3
1,200,734	+		EFB2_01143	0.58	+1.0
1,200,734	+		EFB2_01143	0.58	-2.0
1,200,735	-		EFB2_01143	0.58	-1.0
1,200,735	-		EFB2_01143	0.58	+2.1
1,200,735	-		EFB2_01143	0.58	+0.8
1,200,735	-		EFB2_01143	0.58	-1.8
1,200,744	+		EFB2_01143	0.58	-2.0
1,200,744	+		EFB2_01143	0.58	+2.4
1,200,744	+		EFB2_01143	0.58	-1.6
1,200,745	-		EFB2_01143	0.58	-0.4
1,200,745	-		EFB2_01143	0.58	-1.4
1,200,745	-		EFB2_01143	0.58	+0.3
1,200,745	-		EFB2_01143	0.58	+1.7
1,200,746	+		EFB2_01143	0.59	+1.0
1,200,746	+		EFB2_01143	0.59	+1.0
1,200,746	+		EFB2_01143	0.59	+0.9
1,200,746	+		EFB2_01143	0.59	-0.5
1,200,746	+		EFB2_01143	0.59	-3.2
1,200,746	+		EFB2_01143	0.59	-1.4
1,200,746	+		EFB2_01143	0.59	+2.7
1,200,746	+		EFB2_01143	0.59	-1.8
1,200,746	+		EFB2_01143	0.59	+0.6
1,200,746	+		EFB2_01143	0.59	+0.4
1,200,746	+		EFB2_01143	0.59	+0.2
1,200,746	+		EFB2_01143	0.59	-2.6
1,200,746	+		EFB2_01143	0.59	-2.2
1,200,746	+		EFB2_01143	0.59	-2.2
1,200,746	+		EFB2_01143	0.59	-0.5
1,200,746	+		EFB2_01143	0.59	-1.5
1,200,746	+		EFB2_01143	0.59	-3.9
1,200,746	+		EFB2_01143	0.59	+1.3
1,200,746	+		EFB2_01143	0.59	+0.5
1,200,746	+		EFB2_01143	0.59	-0.2
1,200,747	-		EFB2_01143	0.59	-3.5
1,200,747	-		EFB2_01143	0.59	+0.2
1,200,747	-		EFB2_01143	0.59	+1.4
1,200,747	-		EFB2_01143	0.59	-0.5
1,200,747	-		EFB2_01143	0.59	+1.5
1,200,747	-		EFB2_01143	0.59	+1.3
1,200,747	-		EFB2_01143	0.59	+1.0
1,200,747	-		EFB2_01143	0.59	-3.3
1,200,747	-		EFB2_01143	0.59	+1.3
1,200,747	-		EFB2_01143	0.59	-2.7
1,200,747	-		EFB2_01143	0.59	-2.8
1,200,747	-		EFB2_01143	0.59	+0.4
1,200,747	-		EFB2_01143	0.59	-0.3
1,200,747	-		EFB2_01143	0.59	-3.5
1,200,747	-		EFB2_01143	0.59	+1.7
1,200,747	-		EFB2_01143	0.59	+1.0
1,200,750	+		EFB2_01143	0.59	-1.7
1,200,750	+		EFB2_01143	0.59	-0.9
1,200,750	+		EFB2_01143	0.59	+0.6
1,200,750	+		EFB2_01143	0.59	-1.8
1,200,750	+		EFB2_01143	0.59	+1.0
1,200,750	+		EFB2_01143	0.59	+1.2
1,200,750	+		EFB2_01143	0.59	+1.3
1,200,750	+		EFB2_01143	0.59	-0.5
1,200,750	+		EFB2_01143	0.59	+0.5
1,200,750	+		EFB2_01143	0.59	-0.8
1,200,750	+		EFB2_01143	0.59	+1.8
1,200,750	+		EFB2_01143	0.59	+0.1
1,200,751	-		EFB2_01143	0.59	-3.2
1,200,751	-		EFB2_01143	0.59	+0.3
1,200,751	-		EFB2_01143	0.59	+1.6
1,200,751	-		EFB2_01143	0.59	-0.6
1,200,751	-		EFB2_01143	0.59	-1.4
1,200,751	-		EFB2_01143	0.59	-2.9
1,200,751	-		EFB2_01143	0.59	+0.5
1,200,751	-		EFB2_01143	0.59	+0.0
1,200,751	-		EFB2_01143	0.59	+0.5
1,200,751	-		EFB2_01143	0.59	-1.3
1,200,753	+		EFB2_01143	0.59	+2.0
1,200,754	-		EFB2_01143	0.59	-0.5
1,200,754	-		EFB2_01143	0.59	+1.4
1,200,813	+		EFB2_01143	0.64	-1.2
1,200,813	+		EFB2_01143	0.64	-1.4
1,200,813	+		EFB2_01143	0.64	+1.2
1,200,813	+		EFB2_01143	0.64	+1.5
1,200,814	-		EFB2_01143	0.64	+0.9
1,200,832	+		EFB2_01143	0.65	+1.3
1,200,832	+		EFB2_01143	0.65	+0.2
1,200,832	+		EFB2_01143	0.65	+1.9
1,200,832	+		EFB2_01143	0.65	+0.1
1,200,833	-		EFB2_01143	0.65	+0.6
1,200,833	-		EFB2_01143	0.65	-0.6
1,200,833	-		EFB2_01143	0.65	+0.7
1,200,833	-		EFB2_01143	0.65	-1.5
1,200,833	-		EFB2_01143	0.65	-0.9
1,200,886	-		EFB2_01143	0.69	+1.7
1,200,912	+		EFB2_01143	0.72	-1.8
1,200,934	+		EFB2_01143	0.73	-2.8
1,200,934	+		EFB2_01143	0.73	+2.2
1,200,934	+		EFB2_01143	0.73	+0.4
1,200,934	+		EFB2_01143	0.73	+1.9
1,200,934	+		EFB2_01143	0.73	+2.4
1,200,935	-		EFB2_01143	0.73	+1.8
1,200,992	+		EFB2_01143	0.78	-1.5
1,200,992	+		EFB2_01143	0.78	-1.4
1,200,993	-		EFB2_01143	0.78	-0.4
1,200,993	-		EFB2_01143	0.78	-2.8
1,200,993	-		EFB2_01143	0.78	-0.9
1,200,993	-		EFB2_01143	0.78	+1.0
1,200,993	-		EFB2_01143	0.78	-0.2
1,200,993	-		EFB2_01143	0.78	-2.3
1,201,185	+				-2.5
1,201,230	+				-1.3
1,201,374	+				-1.8
1,201,478	+				+0.1
1,201,479	-				-0.9
1,201,486	+				-1.4
1,201,530	-				+1.1
1,201,589	+				-2.6
1,201,589	+				+0.8
1,201,589	+				+0.0
1,201,590	-				-2.0
1,201,590	-				+0.7
1,201,593	+				+0.1
1,201,593	+				-0.1
1,201,593	+				+2.4
1,201,593	+				-1.0
1,201,593	+				-1.6
1,201,594	-				+1.1
1,201,594	-				+3.0
1,201,594	-				+0.1
1,201,594	-				-2.8
1,201,594	-				+3.8
1,201,594	-				-0.4
1,201,675	-		EFB2_01144	0.10	-1.3
1,201,737	+		EFB2_01144	0.18	-0.4
1,201,738	-		EFB2_01144	0.18	+1.0
1,201,738	-		EFB2_01144	0.18	-0.3
1,201,803	+		EFB2_01144	0.27	+1.7
1,201,803	+		EFB2_01144	0.27	-1.1
1,201,803	+		EFB2_01144	0.27	-0.8
1,201,803	+		EFB2_01144	0.27	+0.9
1,201,804	-		EFB2_01144	0.27	+1.3
1,201,804	-		EFB2_01144	0.27	+0.1
1,201,876	+		EFB2_01144	0.36	-1.8
1,201,877	+		EFB2_01144	0.36	+0.4
1,201,877	+		EFB2_01144	0.36	+1.8
1,201,877	+		EFB2_01144	0.36	+1.5
1,201,878	-		EFB2_01144	0.36	-0.7
1,201,881	+		EFB2_01144	0.37	-1.3
1,201,881	+		EFB2_01144	0.37	+2.0
1,201,882	-		EFB2_01144	0.37	-2.1
1,201,891	-		EFB2_01144	0.38	-3.7
1,201,902	+		EFB2_01144	0.39	-3.2
1,201,902	+		EFB2_01144	0.39	-1.9
1,201,903	-		EFB2_01144	0.39	+0.2
1,201,908	+		EFB2_01144	0.40	+1.7
1,201,908	+		EFB2_01144	0.40	+1.2
1,201,917	+		EFB2_01144	0.41	-4.3
1,201,917	+		EFB2_01144	0.41	+0.7
1,201,918	-		EFB2_01144	0.41	-0.7
1,201,918	-		EFB2_01144	0.41	-2.2
1,201,989	-		EFB2_01144	0.50	+1.1
1,201,989	-		EFB2_01144	0.50	-0.8
1,201,993	+		EFB2_01144	0.51	-1.0
1,202,011	-		EFB2_01144	0.53	+0.5
1,202,041	-		EFB2_01144	0.57	-2.4
1,202,043	+		EFB2_01144	0.57	+0.0
1,202,043	+		EFB2_01144	0.57	-1.0
1,202,044	-		EFB2_01144	0.57	+0.2
1,202,062	+		EFB2_01144	0.60	-0.7
1,202,062	+		EFB2_01144	0.60	-3.4
1,202,063	-		EFB2_01144	0.60	+0.1
1,202,066	+		EFB2_01144	0.60	-1.4
1,202,066	+		EFB2_01144	0.60	-0.3
1,202,066	+		EFB2_01144	0.60	+2.4
1,202,066	+		EFB2_01144	0.60	+0.3
1,202,066	+		EFB2_01144	0.60	+0.2
1,202,067	-		EFB2_01144	0.60	+0.9
1,202,067	-		EFB2_01144	0.60	+1.0
1,202,100	+		EFB2_01144	0.64	-2.3
1,202,155	-		EFB2_01144	0.71	+0.8
1,202,155	-		EFB2_01144	0.71	+1.2
1,202,289	-		EFB2_01144	0.88	-0.6
1,202,329	+				+2.8
1,202,370	-				-0.5
1,202,413	+				-3.7
1,202,445	+				+0.2
1,202,445	+				+2.5
1,202,457	-				-0.8
1,202,483	+				-0.6
1,202,510	+				+1.3
1,202,510	+				-2.5
1,202,514	+				+0.1
1,202,529	-				+1.2
1,202,544	+				+0.9
1,202,544	+				-0.8
1,202,545	-				+1.1
1,202,545	-				+1.9
1,202,584	+				+1.6
1,202,584	+				+1.0
1,202,585	-				+1.3
1,202,586	+				+1.6
1,202,587	-				-0.8
1,202,636	+		EFB2_01145	0.13	-2.4
1,202,688	+		EFB2_01145	0.16	-0.4
1,202,775	+		EFB2_01145	0.22	+0.6
1,202,775	+		EFB2_01145	0.22	+0.2
1,202,776	-		EFB2_01145	0.22	+0.2
1,202,776	-		EFB2_01145	0.22	-2.4
1,202,778	+		EFB2_01145	0.23	+0.7
1,202,778	+		EFB2_01145	0.23	-0.3
1,202,778	+		EFB2_01145	0.23	-2.4
1,202,778	+		EFB2_01145	0.23	-2.2
1,202,779	-		EFB2_01145	0.23	-0.0
1,202,785	-		EFB2_01145	0.23	-0.2
1,202,785	-		EFB2_01145	0.23	+0.7
1,202,793	+		EFB2_01145	0.24	+0.2
1,202,794	-		EFB2_01145	0.24	-0.4
1,202,794	-		EFB2_01145	0.24	-1.4
1,202,794	-		EFB2_01145	0.24	-2.2
1,202,861	-		EFB2_01145	0.28	+0.8
1,202,928	+		EFB2_01145	0.33	+1.2
1,202,950	+		EFB2_01145	0.34	-3.9
1,202,950	+		EFB2_01145	0.34	+0.0
1,202,951	-		EFB2_01145	0.35	-3.8
1,202,951	-		EFB2_01145	0.35	-0.0
1,202,967	+		EFB2_01145	0.36	-0.2
1,203,060	+		EFB2_01145	0.42	-3.5
1,203,060	+		EFB2_01145	0.42	-2.0
1,203,060	+		EFB2_01145	0.42	+0.1
1,203,060	+		EFB2_01145	0.42	+1.9
1,203,060	+		EFB2_01145	0.42	+1.2
1,203,061	-		EFB2_01145	0.42	-0.1
1,203,061	-		EFB2_01145	0.42	-0.0
1,203,061	-		EFB2_01145	0.42	+0.2
1,203,061	-		EFB2_01145	0.42	+1.9
1,203,061	-		EFB2_01145	0.42	-1.9
1,203,091	+		EFB2_01145	0.44	-0.8
1,203,091	+		EFB2_01145	0.44	+0.5
1,203,091	+		EFB2_01145	0.44	+0.5
1,203,092	-		EFB2_01145	0.44	+2.0
1,203,092	-		EFB2_01145	0.44	+1.2
1,203,093	+		EFB2_01145	0.44	+0.9
1,203,094	-		EFB2_01145	0.44	-1.2
1,203,148	+		EFB2_01145	0.48	+0.5
1,203,148	+		EFB2_01145	0.48	+1.1
1,203,149	-		EFB2_01145	0.48	+0.1
1,203,149	-		EFB2_01145	0.48	-0.9
1,203,154	+		EFB2_01145	0.48	+2.2
1,203,154	+		EFB2_01145	0.48	+0.5
1,203,155	-		EFB2_01145	0.49	-0.8
1,203,155	-		EFB2_01145	0.49	-1.0
1,203,155	-		EFB2_01145	0.49	+2.0
1,203,155	-		EFB2_01145	0.49	+0.5
1,203,156	+		EFB2_01145	0.49	-2.2
1,203,156	+		EFB2_01145	0.49	-0.1
1,203,156	+		EFB2_01145	0.49	-1.4
1,203,157	-		EFB2_01145	0.49	+1.2
1,203,157	-		EFB2_01145	0.49	-2.0
1,203,157	-		EFB2_01145	0.49	-0.5
1,203,157	-		EFB2_01145	0.49	-1.3
1,203,238	+		EFB2_01145	0.54	-0.8
1,203,238	+		EFB2_01145	0.54	+0.0
1,203,238	+		EFB2_01145	0.54	-1.6
1,203,238	+		EFB2_01145	0.54	-0.5
1,203,238	+		EFB2_01145	0.54	+1.4
1,203,238	+		EFB2_01145	0.54	+0.6
1,203,238	+		EFB2_01145	0.54	+0.1
1,203,238	+		EFB2_01145	0.54	+0.4
1,203,239	-		EFB2_01145	0.54	+0.0
1,203,239	-		EFB2_01145	0.54	+0.2
1,203,239	-		EFB2_01145	0.54	+0.5
1,203,239	-		EFB2_01145	0.54	-1.2
1,203,239	-		EFB2_01145	0.54	+1.2
1,203,239	-		EFB2_01145	0.54	-1.1
1,203,239	-		EFB2_01145	0.54	+0.2
1,203,239	-		EFB2_01145	0.54	-0.8
1,203,239	-		EFB2_01145	0.54	+2.1
1,203,239	-		EFB2_01145	0.54	+0.9
1,203,239	-		EFB2_01145	0.54	-1.9
1,203,239	-		EFB2_01145	0.54	-1.8
1,203,239	-		EFB2_01145	0.54	+1.4
1,203,239	-		EFB2_01145	0.54	-3.2
1,203,304	-		EFB2_01145	0.59	+0.1
1,203,304	-		EFB2_01145	0.59	-0.4
1,203,304	-		EFB2_01145	0.59	+0.8
1,203,315	+		EFB2_01145	0.60	-2.4
1,203,315	+		EFB2_01145	0.60	-0.8
1,203,316	-		EFB2_01145	0.60	+0.8